Wall clock time and date at job start Mon Mar 8 2021 10:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86298 * 109.46804 * 2 1 4 4 C 1.50703 * 109.47169 * 119.99771 * 2 1 3 5 5 C 1.33394 * 125.20163 * 38.75866 * 4 2 1 6 6 S 1.76196 * 122.53820 * 0.02562 * 5 4 2 7 7 O 1.42100 * 106.40202 * 52.86960 * 6 5 4 8 8 O 1.42095 * 106.40318 * 279.94776 * 6 5 4 9 9 N 1.65605 * 107.21725 * 166.40789 * 6 5 4 10 10 C 1.46497 * 119.99682 * 68.35949 * 9 6 5 11 11 C 1.53004 * 109.47054 * 163.38655 * 10 9 6 12 12 H 1.09008 * 112.84902 * 316.19584 * 11 10 9 13 13 C 1.53958 * 113.74398 * 87.39815 * 11 10 9 14 14 C 1.53782 * 87.01692 * 139.94378 * 13 11 10 15 15 H 1.09009 * 113.61231 * 89.23210 * 14 13 11 16 16 N 1.46493 * 113.61592 * 220.04682 * 14 13 11 17 17 C 1.35319 * 125.86876 * 14.14002 * 16 14 13 18 18 C 1.35344 * 106.17499 * 180.02562 * 17 16 14 19 19 N 1.33769 * 106.49922 * 359.97438 * 18 17 16 20 20 N 1.28630 * 108.88926 * 0.02562 * 19 18 17 21 21 C 1.53780 * 87.17662 * 334.64179 * 14 13 11 22 22 C 1.38422 * 114.91734 * 180.29119 * 5 4 2 23 23 C 1.33388 * 114.92264 * 359.49556 * 22 5 4 24 24 S 1.75880 * 109.59322 * 0.47632 * 23 22 5 25 25 H 0.96700 * 114.00009 * 64.96418 * 1 2 3 26 26 H 1.08996 * 109.47532 * 240.00167 * 2 1 3 27 27 H 1.48495 * 110.00181 * 298.67873 * 3 2 1 28 28 H 1.48503 * 110.00077 * 59.99863 * 3 2 1 29 29 H 0.97000 * 119.99900 * 248.35960 * 9 6 5 30 30 H 1.08998 * 109.47666 * 43.38605 * 10 9 6 31 31 H 1.09003 * 109.47107 * 283.38176 * 10 9 6 32 32 H 1.08993 * 113.61132 * 25.42692 * 13 11 10 33 33 H 1.08999 * 113.66887 * 254.47300 * 13 11 10 34 34 H 1.07995 * 126.90953 * 0.02562 * 17 16 14 35 35 H 1.08002 * 126.75133 * 179.97438 * 18 17 16 36 36 H 1.08995 * 113.61832 * 139.93909 * 21 14 13 37 37 H 1.08998 * 113.60988 * 270.76170 * 21 14 13 38 38 H 1.07998 * 122.53426 * 179.73415 * 22 5 4 39 39 H 1.07998 * 125.20603 * 180.21003 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.3863 -1.8055 1.7626 6 16 -0.0346 -2.5873 1.0739 7 8 0.2590 -2.8175 -0.2972 8 8 -1.1582 -1.8360 1.5126 9 7 -0.1645 -4.0790 1.7812 10 6 -0.5070 -4.1890 3.2014 11 6 -0.9654 -5.6165 3.5064 12 1 -1.6453 -6.0130 2.7522 13 6 0.1861 -6.5750 3.8608 14 6 -0.7431 -7.1659 4.9342 15 1 -1.3627 -7.9863 4.5718 16 7 -0.0612 -7.4808 6.1920 17 6 1.1729 -7.0585 6.5520 18 6 1.4065 -7.5794 7.7792 19 7 0.3180 -8.2850 8.1058 20 7 -0.5330 -8.2068 7.1445 21 6 -1.4652 -5.8082 4.9480 22 6 2.0182 -2.2777 2.9000 23 6 3.0826 -1.5723 3.2856 24 16 3.3255 -0.2220 2.1851 25 1 -0.3933 0.3738 -0.8004 26 1 1.7924 -0.5138 -0.8899 27 1 1.5878 2.4585 -1.2242 28 1 1.5613 2.4679 1.2085 29 1 -0.0138 -4.8800 1.2552 30 1 -1.3107 -3.4912 3.4365 31 1 0.3686 -3.9516 3.8057 32 1 1.0621 -6.0723 4.2704 33 1 0.4332 -7.2758 3.0634 34 1 1.8377 -6.4319 5.9760 35 1 2.2966 -7.4507 8.3771 36 1 -2.5491 -5.8908 5.0271 37 1 -1.0422 -5.0960 5.6565 38 1 1.6776 -3.1533 3.4326 39 1 3.6984 -1.7937 4.1448 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567540_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:10 Heat of formation + Delta-G solvation = 77.908675 kcal Electronic energy + Delta-G solvation = -27507.168437 eV Core-core repulsion = 23481.482908 eV Total energy + Delta-G solvation = -4025.685530 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.24085 -40.76951 -39.62253 -38.07748 -37.84083 -36.65614 -36.30350 -33.98876 -32.04823 -31.99116 -28.90785 -27.59611 -27.32614 -25.32866 -24.47755 -23.61879 -22.42457 -21.74506 -20.99767 -20.18865 -19.12677 -19.04919 -18.69791 -17.93414 -17.72236 -17.46981 -17.40130 -16.62998 -16.39261 -16.00796 -15.85105 -15.55776 -15.32604 -15.25745 -14.88810 -14.37025 -14.20219 -13.98588 -13.92104 -13.77872 -13.74691 -13.25264 -13.08710 -12.92923 -12.82989 -12.73742 -12.65903 -12.58783 -12.24247 -12.09248 -12.01378 -11.72186 -11.66724 -11.07211 -11.00709 -10.77282 -10.34354 -10.13274 -9.80896 -5.28215 -0.64974 -0.53557 0.24928 0.57336 0.61422 0.92600 1.09798 1.29390 1.41987 1.67417 1.76573 1.93454 2.72046 2.77318 2.88659 2.90847 3.15472 3.20136 3.34712 3.49889 3.60140 3.64647 3.75816 3.91979 3.99155 4.05157 4.09540 4.11463 4.19164 4.24192 4.29905 4.34996 4.39747 4.53469 4.55177 4.66792 4.73646 4.76474 4.90481 5.02433 5.21260 5.60261 5.75878 6.13232 7.58672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.078 4.078 3 Si 0.678 3.322 4 C -0.056 4.056 5 C -0.664 4.664 6 S 2.721 3.279 7 O -0.953 6.953 8 O -0.935 6.935 9 N -1.122 6.122 10 C 0.122 3.878 11 C -0.112 4.112 12 H 0.115 0.885 13 C -0.141 4.141 14 C 0.115 3.885 15 H 0.138 0.862 16 N -0.281 5.281 17 C -0.053 4.053 18 C -0.050 4.050 19 N -0.272 5.272 20 N -0.084 5.084 21 C -0.136 4.136 22 C -0.093 4.093 23 C -0.211 4.211 24 S 0.170 5.830 25 H 0.399 0.601 26 H 0.111 0.889 27 H -0.234 1.234 28 H -0.236 1.236 29 H 0.420 0.580 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.188 0.812 35 H 0.190 0.810 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 1.938 -2.947 6.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.189 4.189 3 Si 0.574 3.426 4 C -0.176 4.176 5 C -0.762 4.762 6 S 2.806 3.194 7 O -0.944 6.944 8 O -0.925 6.925 9 N -0.883 5.883 10 C -0.004 4.004 11 C -0.132 4.132 12 H 0.133 0.867 13 C -0.180 4.180 14 C 0.013 3.987 15 H 0.156 0.844 16 N -0.074 5.074 17 C -0.204 4.204 18 C -0.207 4.207 19 N -0.137 5.137 20 N -0.064 5.064 21 C -0.175 4.175 22 C -0.121 4.121 23 C -0.346 4.346 24 S 0.434 5.566 25 H 0.250 0.750 26 H 0.129 0.871 27 H -0.157 1.157 28 H -0.160 1.160 29 H 0.255 0.745 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.205 0.795 35 H 0.207 0.793 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.170 0.830 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.936 3.386 -2.434 6.462 hybrid contribution -0.320 -1.039 -0.572 1.228 sum 4.616 2.347 -3.006 5.988 Atomic orbital electron populations 1.86486 1.16352 1.84883 1.46711 1.24663 0.85653 1.12010 0.96537 0.95388 0.90286 0.73645 0.83318 1.23704 0.99030 0.96237 0.98666 1.29852 1.25741 1.10444 1.10190 1.01399 0.73475 0.71711 0.72769 1.93572 1.85499 1.84795 1.30494 1.93599 1.47227 1.69476 1.82212 1.55674 1.87195 1.25636 1.19746 1.21469 1.00782 0.97679 0.80479 1.22642 0.98164 0.94663 0.97742 0.86661 1.23659 0.97709 0.99000 0.97598 1.23400 0.96317 0.99295 0.79669 0.84437 1.47532 1.12290 1.32498 1.15120 1.23560 0.89987 1.07290 0.99530 1.23679 1.00228 1.00869 0.95926 1.75168 1.00693 1.18650 1.19233 1.78361 1.21902 1.12286 0.93823 1.23477 1.02609 0.94874 0.96542 1.19846 0.95703 1.01451 0.95149 1.25907 1.03428 1.00346 1.04947 1.84227 1.25711 1.27697 1.18978 0.74976 0.87131 1.15681 1.15955 0.74495 0.88908 0.91220 0.88184 0.88778 0.79479 0.79284 0.88715 0.88387 0.83036 0.80608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.97 9.45 -60.08 -0.57 -1.54 16 2 C -0.08 -0.02 2.38 36.01 0.09 0.07 16 3 Si 0.68 -0.88 31.27 -169.99 -5.32 -6.20 16 4 C -0.06 -0.06 5.77 -36.00 -0.21 -0.27 16 5 C -0.66 -0.72 5.71 -41.21 -0.24 -0.95 16 6 S 2.72 4.71 4.22 -107.50 -0.45 4.26 16 7 O -0.95 -3.81 17.15 -61.95 -1.06 -4.87 16 8 O -0.94 -4.75 16.16 -65.18 -1.05 -5.81 16 9 N -1.12 2.97 5.72 -10.61 -0.06 2.91 16 10 C 0.12 -0.49 5.57 -4.04 -0.02 -0.51 16 11 C -0.11 0.61 3.78 -89.71 -0.34 0.27 16 12 H 0.12 -0.69 8.14 -51.92 -0.42 -1.12 16 13 C -0.14 0.83 7.01 -25.82 -0.18 0.65 16 14 C 0.11 -0.40 4.95 -67.12 -0.33 -0.73 16 15 H 0.14 -0.55 8.14 -51.92 -0.42 -0.97 16 16 N -0.28 0.00 3.53 -53.97 -0.19 -0.19 16 17 C -0.05 0.08 10.78 -17.05 -0.18 -0.11 16 18 C -0.05 -0.04 12.05 -17.74 -0.21 -0.26 16 19 N -0.27 -1.31 12.41 30.23 0.38 -0.94 16 20 N -0.08 -0.35 13.17 60.35 0.79 0.45 16 21 C -0.14 0.59 7.44 -25.92 -0.19 0.39 16 22 C -0.09 0.13 9.52 -41.21 -0.39 -0.26 16 23 C -0.21 0.42 11.23 29.04 0.33 0.75 16 24 S 0.17 -0.21 20.88 -107.50 -2.24 -2.46 16 25 H 0.40 -1.01 8.86 45.56 0.40 -0.60 16 26 H 0.11 -0.16 7.96 -51.93 -0.41 -0.58 16 27 H -0.23 0.04 7.11 56.52 0.40 0.44 16 28 H -0.24 -0.40 7.11 56.52 0.40 0.01 16 29 H 0.42 -1.94 8.67 -34.47 -0.30 -2.24 16 30 H 0.09 -0.27 7.64 -51.93 -0.40 -0.67 16 31 H 0.07 -0.41 5.09 -51.93 -0.26 -0.67 16 32 H 0.10 -0.69 6.09 -51.93 -0.32 -1.01 16 33 H 0.09 -0.61 8.14 -51.93 -0.42 -1.03 16 34 H 0.19 -1.05 6.74 -52.49 -0.35 -1.40 16 35 H 0.19 -0.42 8.06 -52.49 -0.42 -0.84 16 36 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 37 H 0.10 -0.40 8.10 -51.93 -0.42 -0.82 16 38 H 0.15 -0.67 4.83 -52.49 -0.25 -0.93 16 39 H 0.18 -0.83 8.06 -52.49 -0.42 -1.26 16 LS Contribution 347.04 15.07 5.23 5.23 Total: 0.00 -14.15 347.04 -10.49 -24.63 By element: Atomic # 1 Polarization: -10.46 SS G_CDS: -4.05 Total: -14.51 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.89 Total: -0.98 kcal Atomic # 7 Polarization: 1.31 SS G_CDS: 0.92 Total: 2.23 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -2.68 Total: -12.21 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.32 Total: -6.20 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -2.70 Total: 1.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -14.15 -10.49 -24.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.542 kcal (2) G-P(sol) polarization free energy of solvation -14.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds