Wall clock time and date at job start Mon Mar 8 2021 10:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86298 * 109.46804 * 2 1 4 4 C 1.50703 * 109.47169 * 119.99771 * 2 1 3 5 5 C 1.33394 * 125.20163 * 38.75866 * 4 2 1 6 6 S 1.76196 * 122.53820 * 0.02562 * 5 4 2 7 7 O 1.42100 * 106.40202 * 52.86960 * 6 5 4 8 8 O 1.42095 * 106.40318 * 279.94776 * 6 5 4 9 9 N 1.65605 * 107.21725 * 166.40789 * 6 5 4 10 10 C 1.46497 * 119.99682 * 68.35949 * 9 6 5 11 11 C 1.53004 * 109.47054 * 163.38655 * 10 9 6 12 12 H 1.09008 * 112.84902 * 316.19584 * 11 10 9 13 13 C 1.53958 * 113.74398 * 87.39815 * 11 10 9 14 14 C 1.53782 * 87.01692 * 139.94378 * 13 11 10 15 15 H 1.09009 * 113.61231 * 89.23210 * 14 13 11 16 16 N 1.46493 * 113.61592 * 220.04682 * 14 13 11 17 17 C 1.35319 * 125.86876 * 14.14002 * 16 14 13 18 18 C 1.35344 * 106.17499 * 180.02562 * 17 16 14 19 19 N 1.33769 * 106.49922 * 359.97438 * 18 17 16 20 20 N 1.28630 * 108.88926 * 0.02562 * 19 18 17 21 21 C 1.53780 * 87.17662 * 334.64179 * 14 13 11 22 22 C 1.38422 * 114.91734 * 180.29119 * 5 4 2 23 23 C 1.33388 * 114.92264 * 359.49556 * 22 5 4 24 24 S 1.75880 * 109.59322 * 0.47632 * 23 22 5 25 25 H 0.96700 * 114.00009 * 64.96418 * 1 2 3 26 26 H 1.08996 * 109.47532 * 240.00167 * 2 1 3 27 27 H 1.48495 * 110.00181 * 298.67873 * 3 2 1 28 28 H 1.48503 * 110.00077 * 59.99863 * 3 2 1 29 29 H 0.97000 * 119.99900 * 248.35960 * 9 6 5 30 30 H 1.08998 * 109.47666 * 43.38605 * 10 9 6 31 31 H 1.09003 * 109.47107 * 283.38176 * 10 9 6 32 32 H 1.08993 * 113.61132 * 25.42692 * 13 11 10 33 33 H 1.08999 * 113.66887 * 254.47300 * 13 11 10 34 34 H 1.07995 * 126.90953 * 0.02562 * 17 16 14 35 35 H 1.08002 * 126.75133 * 179.97438 * 18 17 16 36 36 H 1.08995 * 113.61832 * 139.93909 * 21 14 13 37 37 H 1.08998 * 113.60988 * 270.76170 * 21 14 13 38 38 H 1.07998 * 122.53426 * 179.73415 * 22 5 4 39 39 H 1.07998 * 125.20603 * 180.21003 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.3863 -1.8055 1.7626 6 16 -0.0346 -2.5873 1.0739 7 8 0.2590 -2.8175 -0.2972 8 8 -1.1582 -1.8360 1.5126 9 7 -0.1645 -4.0790 1.7812 10 6 -0.5070 -4.1890 3.2014 11 6 -0.9654 -5.6165 3.5064 12 1 -1.6453 -6.0130 2.7522 13 6 0.1861 -6.5750 3.8608 14 6 -0.7431 -7.1659 4.9342 15 1 -1.3627 -7.9863 4.5718 16 7 -0.0612 -7.4808 6.1920 17 6 1.1729 -7.0585 6.5520 18 6 1.4065 -7.5794 7.7792 19 7 0.3180 -8.2850 8.1058 20 7 -0.5330 -8.2068 7.1445 21 6 -1.4652 -5.8082 4.9480 22 6 2.0182 -2.2777 2.9000 23 6 3.0826 -1.5723 3.2856 24 16 3.3255 -0.2220 2.1851 25 1 -0.3933 0.3738 -0.8004 26 1 1.7924 -0.5138 -0.8899 27 1 1.5878 2.4585 -1.2242 28 1 1.5613 2.4679 1.2085 29 1 -0.0138 -4.8800 1.2552 30 1 -1.3107 -3.4912 3.4365 31 1 0.3686 -3.9516 3.8057 32 1 1.0621 -6.0723 4.2704 33 1 0.4332 -7.2758 3.0634 34 1 1.8377 -6.4319 5.9760 35 1 2.2966 -7.4507 8.3771 36 1 -2.5491 -5.8908 5.0271 37 1 -1.0422 -5.0960 5.6565 38 1 1.6776 -3.1533 3.4326 39 1 3.6984 -1.7937 4.1448 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567540_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:10 Heat of formation + Delta-G solvation = 70.254764 kcal Electronic energy + Delta-G solvation = -27507.500336 eV Core-core repulsion = 23481.482908 eV Total energy + Delta-G solvation = -4026.017428 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.21203 -40.44724 -39.53882 -38.21830 -37.84701 -36.83421 -36.14656 -33.91748 -31.96734 -31.93960 -28.67446 -27.51507 -26.91579 -25.16291 -24.38766 -23.57355 -22.28567 -21.66400 -20.72955 -20.09778 -19.06695 -18.91704 -18.65563 -17.92698 -17.63025 -17.32896 -17.27168 -16.46521 -16.34197 -15.90218 -15.79767 -15.37952 -15.24134 -15.12347 -14.69030 -14.34559 -14.10876 -13.80177 -13.66034 -13.59574 -13.48450 -13.22027 -13.11697 -13.05202 -13.00078 -12.65818 -12.58851 -12.45427 -12.27652 -11.79818 -11.75674 -11.62411 -11.54823 -11.02937 -10.91500 -10.54596 -10.32510 -10.04054 -9.66622 -5.20109 -0.68539 -0.45999 0.36048 0.68238 0.70091 1.02195 1.22143 1.49086 1.49262 1.64323 1.80897 2.01179 2.72444 3.00677 3.08904 3.26076 3.40310 3.50014 3.56633 3.70147 3.72797 3.92229 4.01873 4.13134 4.21138 4.23410 4.30812 4.36277 4.42356 4.48596 4.63485 4.71327 4.77747 4.82794 4.85964 4.91801 4.95775 5.00751 5.19007 5.26618 5.33924 5.75532 6.06487 6.29284 7.55850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.098 4.098 3 Si 0.758 3.242 4 C -0.089 4.089 5 C -0.676 4.676 6 S 2.731 3.269 7 O -0.985 6.985 8 O -0.979 6.979 9 N -1.107 6.107 10 C 0.114 3.886 11 C -0.101 4.101 12 H 0.121 0.879 13 C -0.128 4.128 14 C 0.100 3.900 15 H 0.137 0.863 16 N -0.274 5.274 17 C -0.034 4.034 18 C -0.070 4.070 19 N -0.322 5.322 20 N -0.134 5.134 21 C -0.136 4.136 22 C -0.104 4.104 23 C -0.206 4.206 24 S 0.185 5.815 25 H 0.411 0.589 26 H 0.122 0.878 27 H -0.250 1.250 28 H -0.280 1.280 29 H 0.431 0.569 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.235 0.765 35 H 0.212 0.788 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.182 0.818 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 1.938 -3.053 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.206 4.206 3 Si 0.656 3.344 4 C -0.210 4.210 5 C -0.777 4.777 6 S 2.818 3.182 7 O -0.975 6.975 8 O -0.969 6.969 9 N -0.872 5.872 10 C -0.011 4.011 11 C -0.121 4.121 12 H 0.139 0.861 13 C -0.166 4.166 14 C -0.001 4.001 15 H 0.155 0.845 16 N -0.068 5.068 17 C -0.185 4.185 18 C -0.228 4.228 19 N -0.187 5.187 20 N -0.113 5.113 21 C -0.175 4.175 22 C -0.131 4.131 23 C -0.342 4.342 24 S 0.449 5.551 25 H 0.264 0.736 26 H 0.140 0.860 27 H -0.174 1.174 28 H -0.206 1.206 29 H 0.269 0.731 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.251 0.749 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.199 0.801 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.973 3.343 -2.579 8.152 hybrid contribution -0.945 -0.999 -0.511 1.467 sum 6.028 2.344 -3.089 7.168 Atomic orbital electron populations 1.86458 1.17556 1.85342 1.47857 1.25037 0.84959 1.13482 0.97148 0.94547 0.88942 0.71020 0.79879 1.24036 1.00445 0.96924 0.99582 1.29839 1.25628 1.10825 1.11444 1.00673 0.73140 0.72149 0.72201 1.93517 1.85871 1.85401 1.32744 1.93545 1.49487 1.71104 1.82727 1.55289 1.86960 1.24432 1.20492 1.21684 1.01596 0.98221 0.79619 1.22539 0.98597 0.93940 0.97037 0.86087 1.23719 0.97606 0.98607 0.96712 1.23774 0.97560 0.99637 0.79127 0.84540 1.47841 1.12746 1.31153 1.15068 1.24254 0.89486 1.05962 0.98826 1.24248 1.00219 1.00895 0.97439 1.75083 1.02356 1.20639 1.20601 1.78278 1.22995 1.14866 0.95123 1.23489 1.02323 0.94406 0.97319 1.20157 0.95775 1.02624 0.94587 1.26357 1.03333 0.99238 1.05224 1.84132 1.24280 1.28082 1.18630 0.73590 0.86009 1.17383 1.20612 0.73123 0.90295 0.88718 0.86190 0.87463 0.74864 0.77155 0.89330 0.88314 0.80130 0.77507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.00 9.45 -125.22 -1.18 -4.18 16 2 C -0.10 -0.14 2.38 71.24 0.17 0.03 16 3 Si 0.76 -1.49 31.27 68.60 2.15 0.65 16 4 C -0.09 -0.21 5.77 24.59 0.14 -0.07 16 5 C -0.68 -1.24 5.71 21.22 0.12 -1.11 16 6 S 2.73 10.89 4.22 -56.49 -0.24 10.66 16 7 O -0.99 -8.89 17.15 -123.44 -2.12 -11.01 16 8 O -0.98 -11.44 16.16 -120.35 -1.95 -13.39 16 9 N -1.11 6.92 5.72 -187.49 -1.07 5.85 16 10 C 0.11 -1.11 5.57 86.38 0.48 -0.63 16 11 C -0.10 1.27 3.78 -10.21 -0.04 1.23 16 12 H 0.12 -1.63 8.14 -2.38 -0.02 -1.65 16 13 C -0.13 1.88 7.01 31.18 0.22 2.10 16 14 C 0.10 -0.80 4.95 45.52 0.23 -0.58 16 15 H 0.14 -1.11 8.14 -2.38 -0.02 -1.13 16 16 N -0.27 0.19 3.53 -324.67 -1.15 -0.96 16 17 C -0.03 0.17 10.78 83.49 0.90 1.07 16 18 C -0.07 -0.08 12.05 83.73 1.01 0.93 16 19 N -0.32 -3.49 12.41 -58.26 -0.72 -4.22 16 20 N -0.13 -1.25 13.17 37.02 0.49 -0.76 16 21 C -0.14 1.29 7.44 31.12 0.23 1.52 16 22 C -0.10 0.50 9.52 21.22 0.20 0.70 16 23 C -0.21 1.34 11.23 66.72 0.75 2.09 16 24 S 0.18 -0.64 20.88 -56.49 -1.18 -1.82 16 25 H 0.41 -1.25 8.86 -74.06 -0.66 -1.91 16 26 H 0.12 -0.25 7.96 -2.39 -0.02 -0.27 16 27 H -0.25 -0.04 7.11 99.48 0.71 0.67 16 28 H -0.28 -1.39 7.11 99.48 0.71 -0.68 16 29 H 0.43 -4.56 8.67 -96.74 -0.84 -5.40 16 30 H 0.08 -0.48 7.64 -2.39 -0.02 -0.50 16 31 H 0.10 -1.41 5.09 -2.39 -0.01 -1.43 16 32 H 0.12 -2.22 6.09 -2.39 -0.01 -2.24 16 33 H 0.11 -1.75 8.14 -2.39 -0.02 -1.77 16 34 H 0.24 -3.70 6.74 -2.91 -0.02 -3.72 16 35 H 0.21 -1.12 8.06 -2.91 -0.02 -1.14 16 36 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.10 -0.92 8.10 -2.39 -0.02 -0.94 16 38 H 0.18 -2.23 4.83 -2.91 -0.01 -2.24 16 39 H 0.21 -2.78 8.06 -2.91 -0.02 -2.80 16 Total: 0.00 -36.90 347.04 -2.88 -39.78 By element: Atomic # 1 Polarization: -27.58 SS G_CDS: -0.32 Total: -27.90 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.41 Total: 7.29 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -2.45 Total: -0.09 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -5.25 Total: -28.58 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.15 Total: 0.65 kcal Atomic # 16 Polarization: 10.25 SS G_CDS: -1.42 Total: 8.83 kcal Total: -36.90 -2.88 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.037 kcal (2) G-P(sol) polarization free energy of solvation -36.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds