Wall clock time and date at job start Mon Mar 8 2021 10:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47220 * 2 1 4 4 C 1.50702 * 109.46584 * 120.00089 * 2 1 3 5 5 C 1.33390 * 125.20683 * 65.00165 * 4 2 1 6 6 C 1.38422 * 114.91870 * 180.02562 * 5 4 2 7 7 S 1.76205 * 122.53572 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.40091 * 23.54296 * 7 6 5 9 9 O 1.42106 * 106.40028 * 156.46004 * 7 6 5 10 10 N 1.65600 * 107.22031 * 270.00078 * 7 6 5 11 11 C 1.46504 * 119.99834 * 64.99971 * 10 7 6 12 12 C 1.53000 * 109.46739 * 165.00048 * 11 10 7 13 13 H 1.08994 * 112.84946 * 43.80642 * 12 11 10 14 14 C 1.53784 * 113.61104 * 174.99879 * 12 11 10 15 15 C 1.53784 * 87.08103 * 139.98059 * 14 12 11 16 16 H 1.08999 * 113.61364 * 89.20162 * 15 14 12 17 17 N 1.46494 * 113.61715 * 220.01959 * 15 14 12 18 18 C 1.35319 * 125.86928 * 84.71673 * 17 15 14 19 19 C 1.35348 * 106.17639 * 179.90899 * 18 17 15 20 20 N 1.33776 * 106.49579 * 0.34557 * 19 18 17 21 21 N 1.28632 * 108.88469 * 359.77751 * 20 19 18 22 22 C 1.53781 * 87.08121 * 334.56779 * 15 14 12 23 23 C 1.33383 * 114.92604 * 0.02562 * 6 5 4 24 24 S 1.75889 * 109.59330 * 359.97438 * 23 6 5 25 25 H 0.96707 * 113.99720 * 60.00286 * 1 2 3 26 26 H 1.09002 * 109.47270 * 239.99770 * 2 1 3 27 27 H 1.48495 * 110.00171 * 298.67862 * 3 2 1 28 28 H 1.48503 * 110.00016 * 59.99932 * 3 2 1 29 29 H 1.08000 * 122.53444 * 359.97438 * 5 4 2 30 30 H 0.96997 * 119.99778 * 245.00058 * 10 7 6 31 31 H 1.09001 * 109.46883 * 285.00167 * 11 10 7 32 32 H 1.09004 * 109.46938 * 45.00244 * 11 10 7 33 33 H 1.08999 * 113.61553 * 254.52516 * 14 12 11 34 34 H 1.08999 * 113.61592 * 25.34951 * 14 12 11 35 35 H 1.08006 * 126.91093 * 0.02562 * 18 17 15 36 36 H 1.08001 * 126.75473 * 180.12668 * 19 18 17 37 37 H 1.08998 * 113.61553 * 270.88543 * 22 15 14 38 38 H 1.09001 * 113.61854 * 139.97536 * 22 15 14 39 39 H 1.07996 * 125.20606 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7533 -2.0052 1.4974 6 6 2.3052 -2.4357 2.6917 7 16 2.1887 -4.1056 3.2420 8 8 1.9838 -4.8975 2.0801 9 8 3.2712 -4.3085 4.1399 10 7 0.8046 -4.2296 4.1425 11 6 -0.5018 -4.0359 3.5083 12 6 -1.6010 -4.5604 4.4343 13 1 -1.4541 -4.2676 5.4738 14 6 -3.0235 -4.2937 3.9144 15 6 -3.3860 -5.7017 4.4156 16 1 -3.7288 -5.7221 5.4500 17 7 -4.2700 -6.4379 3.5087 18 6 -3.8786 -7.1659 2.4373 19 6 -5.0093 -7.6710 1.8911 20 7 -6.0244 -7.2268 2.6406 21 7 -5.5531 -6.4990 3.5908 22 6 -1.8991 -6.0578 4.2502 23 6 2.9308 -1.4906 3.3948 24 16 2.8409 0.0411 2.5349 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 -0.8900 27 1 1.5880 2.4585 -1.2242 28 1 1.5615 2.4678 1.2085 29 1 1.2184 -2.6672 0.8326 30 1 0.8588 -4.4305 5.0899 31 1 -0.6607 -2.9740 3.3207 32 1 -0.5316 -4.5801 2.5643 33 1 -3.5401 -3.4947 4.4461 34 1 -3.0796 -4.1865 2.8312 35 1 -2.8672 -7.3156 2.0893 36 1 -5.0787 -8.3048 1.0194 37 1 -1.6479 -6.4342 3.2586 38 1 -1.5078 -6.6827 5.0530 39 1 3.4181 -1.6426 4.3465 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567540_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:14 Heat of formation + Delta-G solvation = 70.816606 kcal Electronic energy + Delta-G solvation = -26909.815661 eV Core-core repulsion = 22883.822597 eV Total energy + Delta-G solvation = -4025.993065 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.18781 -40.72317 -39.51199 -38.31198 -37.79216 -36.93568 -36.33218 -33.95011 -32.07940 -31.93519 -28.89494 -27.31703 -27.27399 -25.26550 -24.93331 -23.56378 -22.40647 -21.33966 -20.99966 -20.10259 -19.19362 -19.05381 -18.73146 -18.34479 -17.82815 -17.43388 -17.16129 -16.69091 -16.39570 -16.06840 -15.90745 -15.55878 -15.54570 -15.00580 -14.52047 -14.35362 -14.21579 -14.06963 -13.92764 -13.87887 -13.76441 -13.27994 -13.20235 -13.10258 -12.95166 -12.74985 -12.72942 -12.59074 -12.51735 -12.20670 -11.94332 -11.68332 -11.66273 -10.97144 -10.80961 -10.74416 -10.28978 -10.28306 -9.91595 -5.25155 -0.83916 -0.54217 0.20828 0.50253 0.66917 0.91454 1.03173 1.34408 1.37240 1.70888 1.72554 1.93144 2.61692 2.78682 2.92217 3.00939 3.16163 3.21561 3.31755 3.56057 3.58484 3.69049 3.76077 3.90616 4.05261 4.05795 4.11753 4.19522 4.22660 4.26733 4.34320 4.38590 4.42419 4.54240 4.55664 4.64647 4.78991 4.81910 4.93346 4.98780 5.27098 5.65874 5.70173 6.17016 7.63476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.036 4.036 3 Si 0.647 3.353 4 C -0.181 4.181 5 C -0.047 4.047 6 C -0.688 4.688 7 S 2.711 3.289 8 O -0.948 6.948 9 O -0.953 6.953 10 N -1.115 6.115 11 C 0.127 3.873 12 C -0.110 4.110 13 H 0.112 0.888 14 C -0.135 4.135 15 C 0.115 3.885 16 H 0.137 0.863 17 N -0.281 5.281 18 C -0.051 4.051 19 C -0.050 4.050 20 N -0.272 5.272 21 N -0.086 5.086 22 C -0.140 4.140 23 C -0.085 4.085 24 S 0.170 5.830 25 H 0.385 0.615 26 H 0.090 0.910 27 H -0.236 1.236 28 H -0.235 1.235 29 H 0.156 0.844 30 H 0.421 0.579 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.190 0.810 36 H 0.191 0.809 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 4.226 -0.113 6.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.148 4.148 3 Si 0.545 3.455 4 C -0.299 4.299 5 C -0.076 4.076 6 C -0.788 4.788 7 S 2.797 3.203 8 O -0.938 6.938 9 O -0.944 6.944 10 N -0.876 5.876 11 C 0.001 3.999 12 C -0.131 4.131 13 H 0.130 0.870 14 C -0.174 4.174 15 C 0.013 3.987 16 H 0.155 0.845 17 N -0.075 5.075 18 C -0.202 4.202 19 C -0.207 4.207 20 N -0.138 5.138 21 N -0.066 5.066 22 C -0.179 4.179 23 C -0.224 4.224 24 S 0.434 5.566 25 H 0.233 0.767 26 H 0.108 0.892 27 H -0.159 1.159 28 H -0.158 1.158 29 H 0.173 0.827 30 H 0.256 0.744 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.207 0.793 36 H 0.208 0.792 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.212 6.098 1.115 7.495 hybrid contribution -0.676 -1.165 -1.029 1.695 sum 3.537 4.933 0.086 6.070 Atomic orbital electron populations 1.86579 1.17203 1.80173 1.50103 1.24026 0.84664 1.10169 0.95945 0.95199 0.91844 0.75088 0.83362 1.23785 1.07933 0.97231 1.00905 1.19588 0.98173 0.95017 0.94786 1.29984 1.15862 1.26386 1.06531 1.01557 0.72230 0.73141 0.73339 1.93603 1.85281 1.65405 1.49545 1.93625 1.51045 1.84977 1.64715 1.55525 1.20559 1.88171 1.23333 1.21327 0.80922 1.01591 0.96070 1.22572 0.93769 0.95599 1.01135 0.86954 1.23464 0.95119 0.95699 1.03126 1.23397 0.88292 0.92677 0.94337 0.84536 1.47512 1.06588 1.33187 1.20224 1.23625 1.02709 1.01225 0.92615 1.23683 0.88429 1.05222 1.03409 1.75160 1.27109 1.09223 1.02296 1.78338 0.90986 1.17877 1.19368 1.23621 0.91689 0.97554 1.04989 1.25916 0.98166 0.95625 1.02695 1.84440 1.49925 1.10121 1.12144 0.76653 0.89221 1.15887 1.15830 0.82676 0.74388 0.90708 0.89589 0.88922 0.88378 0.79305 0.79243 0.87923 0.88848 0.79584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.41 12.86 -35.23 -0.45 -0.05 16 2 C -0.04 0.05 2.95 36.01 0.11 0.16 16 3 Si 0.65 -1.30 30.98 -169.99 -5.27 -6.56 16 4 C -0.18 0.04 5.73 -36.00 -0.21 -0.17 16 5 C -0.05 0.00 9.59 -41.21 -0.40 -0.40 16 6 C -0.69 0.32 5.86 -41.21 -0.24 0.08 16 7 S 2.71 -0.75 5.80 -107.50 -0.62 -1.37 16 8 O -0.95 -2.46 17.10 -57.17 -0.98 -3.44 16 9 O -0.95 -2.34 17.64 -57.17 -1.01 -3.35 16 10 N -1.11 4.08 6.00 -10.61 -0.06 4.02 16 11 C 0.13 -0.54 6.06 -4.04 -0.02 -0.56 16 12 C -0.11 0.59 3.79 -89.80 -0.34 0.25 16 13 H 0.11 -0.75 8.12 -51.93 -0.42 -1.17 16 14 C -0.13 0.54 7.44 -25.92 -0.19 0.35 16 15 C 0.11 -0.33 4.96 -67.12 -0.33 -0.66 16 16 H 0.14 -0.50 8.14 -51.93 -0.42 -0.92 16 17 N -0.28 -0.22 3.53 -53.97 -0.19 -0.41 16 18 C -0.05 0.02 10.78 -17.04 -0.18 -0.17 16 19 C -0.05 -0.09 12.05 -17.74 -0.21 -0.30 16 20 N -0.27 -1.48 12.41 30.24 0.38 -1.11 16 21 N -0.09 -0.40 13.16 60.35 0.79 0.39 16 22 C -0.14 0.66 6.98 -25.92 -0.18 0.48 16 23 C -0.08 0.11 10.70 29.04 0.31 0.42 16 24 S 0.17 -0.21 20.60 -107.50 -2.21 -2.42 16 25 H 0.38 -1.78 8.74 45.56 0.40 -1.39 16 26 H 0.09 -0.28 7.96 -51.93 -0.41 -0.70 16 27 H -0.24 0.12 7.11 56.52 0.40 0.52 16 28 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 29 H 0.16 -0.09 7.97 -52.49 -0.42 -0.51 16 30 H 0.42 -2.34 8.64 -34.47 -0.30 -2.64 16 31 H 0.07 -0.34 8.14 -51.93 -0.42 -0.76 16 32 H 0.09 -0.34 7.45 -51.93 -0.39 -0.73 16 33 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 34 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 35 H 0.19 -0.74 6.73 -52.48 -0.35 -1.10 16 36 H 0.19 -0.25 8.06 -52.49 -0.42 -0.67 16 37 H 0.10 -0.50 6.08 -51.93 -0.32 -0.81 16 38 H 0.09 -0.50 8.14 -51.93 -0.42 -0.92 16 39 H 0.19 -0.64 8.00 -52.49 -0.42 -1.06 16 LS Contribution 359.62 15.07 5.42 5.42 Total: 0.00 -13.11 359.62 -10.46 -23.57 By element: Atomic # 1 Polarization: -9.82 SS G_CDS: -4.36 Total: -14.18 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.90 Total: -0.52 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: 0.92 Total: 2.89 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -2.44 Total: -6.83 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.27 Total: -6.56 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.84 Total: -3.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -13.11 -10.46 -23.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.387 kcal (2) G-P(sol) polarization free energy of solvation -13.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds