Wall clock time and date at job start Mon Mar 8 2021 10:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47220 * 2 1 4 4 C 1.50702 * 109.46584 * 120.00089 * 2 1 3 5 5 C 1.33390 * 125.20683 * 65.00165 * 4 2 1 6 6 C 1.38422 * 114.91870 * 180.02562 * 5 4 2 7 7 S 1.76205 * 122.53572 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.40091 * 23.54296 * 7 6 5 9 9 O 1.42106 * 106.40028 * 156.46004 * 7 6 5 10 10 N 1.65600 * 107.22031 * 270.00078 * 7 6 5 11 11 C 1.46504 * 119.99834 * 64.99971 * 10 7 6 12 12 C 1.53000 * 109.46739 * 165.00048 * 11 10 7 13 13 H 1.08994 * 112.84946 * 43.80642 * 12 11 10 14 14 C 1.53784 * 113.61104 * 174.99879 * 12 11 10 15 15 C 1.53784 * 87.08103 * 139.98059 * 14 12 11 16 16 H 1.08999 * 113.61364 * 89.20162 * 15 14 12 17 17 N 1.46494 * 113.61715 * 220.01959 * 15 14 12 18 18 C 1.35319 * 125.86928 * 84.71673 * 17 15 14 19 19 C 1.35348 * 106.17639 * 179.90899 * 18 17 15 20 20 N 1.33776 * 106.49579 * 0.34557 * 19 18 17 21 21 N 1.28632 * 108.88469 * 359.77751 * 20 19 18 22 22 C 1.53781 * 87.08121 * 334.56779 * 15 14 12 23 23 C 1.33383 * 114.92604 * 0.02562 * 6 5 4 24 24 S 1.75889 * 109.59330 * 359.97438 * 23 6 5 25 25 H 0.96707 * 113.99720 * 60.00286 * 1 2 3 26 26 H 1.09002 * 109.47270 * 239.99770 * 2 1 3 27 27 H 1.48495 * 110.00171 * 298.67862 * 3 2 1 28 28 H 1.48503 * 110.00016 * 59.99932 * 3 2 1 29 29 H 1.08000 * 122.53444 * 359.97438 * 5 4 2 30 30 H 0.96997 * 119.99778 * 245.00058 * 10 7 6 31 31 H 1.09001 * 109.46883 * 285.00167 * 11 10 7 32 32 H 1.09004 * 109.46938 * 45.00244 * 11 10 7 33 33 H 1.08999 * 113.61553 * 254.52516 * 14 12 11 34 34 H 1.08999 * 113.61592 * 25.34951 * 14 12 11 35 35 H 1.08006 * 126.91093 * 0.02562 * 18 17 15 36 36 H 1.08001 * 126.75473 * 180.12668 * 19 18 17 37 37 H 1.08998 * 113.61553 * 270.88543 * 22 15 14 38 38 H 1.09001 * 113.61854 * 139.97536 * 22 15 14 39 39 H 1.07996 * 125.20606 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7533 -2.0052 1.4974 6 6 2.3052 -2.4357 2.6917 7 16 2.1887 -4.1056 3.2420 8 8 1.9838 -4.8975 2.0801 9 8 3.2712 -4.3085 4.1399 10 7 0.8046 -4.2296 4.1425 11 6 -0.5018 -4.0359 3.5083 12 6 -1.6010 -4.5604 4.4343 13 1 -1.4541 -4.2676 5.4738 14 6 -3.0235 -4.2937 3.9144 15 6 -3.3860 -5.7017 4.4156 16 1 -3.7288 -5.7221 5.4500 17 7 -4.2700 -6.4379 3.5087 18 6 -3.8786 -7.1659 2.4373 19 6 -5.0093 -7.6710 1.8911 20 7 -6.0244 -7.2268 2.6406 21 7 -5.5531 -6.4990 3.5908 22 6 -1.8991 -6.0578 4.2502 23 6 2.9308 -1.4906 3.3948 24 16 2.8409 0.0411 2.5349 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 -0.8900 27 1 1.5880 2.4585 -1.2242 28 1 1.5615 2.4678 1.2085 29 1 1.2184 -2.6672 0.8326 30 1 0.8588 -4.4305 5.0899 31 1 -0.6607 -2.9740 3.3207 32 1 -0.5316 -4.5801 2.5643 33 1 -3.5401 -3.4947 4.4461 34 1 -3.0796 -4.1865 2.8312 35 1 -2.8672 -7.3156 2.0893 36 1 -5.0787 -8.3048 1.0194 37 1 -1.6479 -6.4342 3.2586 38 1 -1.5078 -6.6827 5.0530 39 1 3.4181 -1.6426 4.3465 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567540_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:14 Heat of formation + Delta-G solvation = 63.638774 kcal Electronic energy + Delta-G solvation = -26910.126915 eV Core-core repulsion = 22883.822597 eV Total energy + Delta-G solvation = -4026.304319 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.24760 -40.44212 -39.40901 -38.37634 -37.67434 -37.00815 -36.13265 -33.93464 -31.99955 -31.97452 -28.66934 -27.20239 -26.93442 -25.14234 -24.84394 -23.60369 -22.31064 -21.23490 -20.78466 -19.97444 -19.07504 -18.93915 -18.60277 -18.27883 -17.74690 -17.36259 -16.98247 -16.54455 -16.27868 -15.97487 -15.83769 -15.49001 -15.36307 -14.87257 -14.43959 -14.25152 -14.12995 -13.97071 -13.74499 -13.65251 -13.51955 -13.31318 -13.20434 -13.06802 -12.86123 -12.72563 -12.67093 -12.51750 -12.45941 -11.91246 -11.77702 -11.63186 -11.53368 -10.96048 -10.65326 -10.50553 -10.36325 -10.18596 -9.82062 -5.10222 -0.77000 -0.45504 0.31809 0.60374 0.63778 0.98771 1.16069 1.46014 1.49043 1.59938 1.81660 2.06854 2.68880 3.06134 3.15348 3.25524 3.35437 3.51175 3.59062 3.68749 3.70960 3.92432 3.97612 4.19868 4.20959 4.26438 4.29003 4.38851 4.42166 4.50257 4.61435 4.64286 4.70858 4.78569 4.83572 4.90348 4.94441 4.98041 5.06879 5.22926 5.31482 5.71978 6.07446 6.48425 7.51435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.042 4.042 3 Si 0.708 3.292 4 C -0.196 4.196 5 C -0.057 4.057 6 C -0.694 4.694 7 S 2.730 3.270 8 O -0.980 6.980 9 O -0.983 6.983 10 N -1.101 6.101 11 C 0.121 3.879 12 C -0.096 4.096 13 H 0.132 0.868 14 C -0.133 4.133 15 C 0.100 3.900 16 H 0.142 0.858 17 N -0.274 5.274 18 C -0.038 4.038 19 C -0.068 4.068 20 N -0.320 5.320 21 N -0.129 5.129 22 C -0.136 4.136 23 C -0.085 4.085 24 S 0.177 5.823 25 H 0.399 0.601 26 H 0.108 0.892 27 H -0.256 1.256 28 H -0.273 1.273 29 H 0.157 0.843 30 H 0.432 0.568 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.227 0.773 36 H 0.212 0.788 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 4.399 0.105 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.154 4.154 3 Si 0.610 3.390 4 C -0.313 4.313 5 C -0.086 4.086 6 C -0.794 4.794 7 S 2.817 3.183 8 O -0.970 6.970 9 O -0.973 6.973 10 N -0.865 5.865 11 C -0.005 4.005 12 C -0.116 4.116 13 H 0.150 0.850 14 C -0.172 4.172 15 C -0.001 4.001 16 H 0.160 0.840 17 N -0.068 5.068 18 C -0.189 4.189 19 C -0.226 4.226 20 N -0.184 5.184 21 N -0.108 5.108 22 C -0.174 4.174 23 C -0.224 4.224 24 S 0.441 5.559 25 H 0.251 0.749 26 H 0.126 0.874 27 H -0.180 1.180 28 H -0.199 1.199 29 H 0.174 0.826 30 H 0.270 0.730 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.243 0.757 36 H 0.229 0.771 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.406 6.267 1.348 8.385 hybrid contribution -1.042 -1.152 -1.098 1.902 sum 4.364 5.114 0.250 6.728 Atomic orbital electron populations 1.86535 1.17644 1.80597 1.51354 1.24186 0.84455 1.10492 0.96249 0.94483 0.90959 0.73519 0.80087 1.24039 1.08204 0.97466 1.01591 1.19701 0.98538 0.95262 0.95124 1.29902 1.16581 1.26213 1.06739 1.00735 0.72187 0.72823 0.72550 1.93561 1.85829 1.66599 1.50969 1.93581 1.52868 1.85545 1.65298 1.55197 1.19741 1.87854 1.23720 1.21459 0.80606 1.02092 0.96307 1.22520 0.92278 0.95001 1.01805 0.85038 1.23452 0.95983 0.95022 1.02783 1.23826 0.88734 0.93291 0.94217 0.84019 1.47842 1.05930 1.32547 1.20515 1.24199 1.03762 0.99463 0.91500 1.24222 0.88454 1.05807 1.04082 1.75079 1.29167 1.10639 1.03550 1.78244 0.92898 1.19412 1.20246 1.23681 0.89835 0.98145 1.05716 1.26220 0.97596 0.95311 1.03294 1.84413 1.49603 1.10057 1.11862 0.74929 0.87404 1.18004 1.19943 0.82562 0.73028 0.90221 0.89719 0.88735 0.89048 0.75663 0.77135 0.87518 0.87671 0.77719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.98 12.86 -148.98 -1.92 -0.94 16 2 C -0.04 0.14 2.95 71.24 0.21 0.35 16 3 Si 0.71 -2.81 30.98 68.60 2.13 -0.69 16 4 C -0.20 0.13 5.73 24.59 0.14 0.27 16 5 C -0.06 0.01 9.59 21.22 0.20 0.21 16 6 C -0.69 0.85 5.86 21.21 0.12 0.97 16 7 S 2.73 -2.22 5.80 -56.49 -0.33 -2.55 16 8 O -0.98 -5.15 17.10 -128.00 -2.19 -7.33 16 9 O -0.98 -4.64 17.64 -128.00 -2.26 -6.90 16 10 N -1.10 9.30 6.00 -187.48 -1.12 8.18 16 11 C 0.12 -1.18 6.06 86.38 0.52 -0.65 16 12 C -0.10 1.18 3.79 -10.27 -0.04 1.14 16 13 H 0.13 -2.08 8.12 -2.39 -0.02 -2.10 16 14 C -0.13 1.16 7.44 31.12 0.23 1.39 16 15 C 0.10 -0.63 4.96 45.52 0.23 -0.40 16 16 H 0.14 -1.08 8.14 -2.39 -0.02 -1.10 16 17 N -0.27 -0.47 3.53 -324.67 -1.15 -1.62 16 18 C -0.04 0.04 10.78 83.49 0.90 0.94 16 19 C -0.07 -0.26 12.05 83.73 1.01 0.74 16 20 N -0.32 -4.00 12.41 -58.25 -0.72 -4.73 16 21 N -0.13 -1.40 13.16 37.02 0.49 -0.91 16 22 C -0.14 1.51 6.98 31.12 0.22 1.72 16 23 C -0.09 0.27 10.70 66.72 0.71 0.98 16 24 S 0.18 -0.48 20.60 -56.49 -1.16 -1.64 16 25 H 0.40 -3.81 8.74 -74.05 -0.65 -4.46 16 26 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 27 H -0.26 0.23 7.11 99.48 0.71 0.94 16 28 H -0.27 -0.63 7.11 99.48 0.71 0.07 16 29 H 0.16 -0.16 7.97 -2.91 -0.02 -0.19 16 30 H 0.43 -5.48 8.64 -96.75 -0.84 -6.31 16 31 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.08 -0.76 7.45 -2.39 -0.02 -0.77 16 33 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.09 -0.64 8.10 -2.39 -0.02 -0.66 16 35 H 0.23 -2.24 6.73 -2.91 -0.02 -2.26 16 36 H 0.21 -0.53 8.06 -2.91 -0.02 -0.56 16 37 H 0.11 -1.25 6.08 -2.39 -0.01 -1.26 16 38 H 0.10 -1.36 8.14 -2.39 -0.02 -1.38 16 39 H 0.21 -1.60 8.00 -2.91 -0.02 -1.62 16 Total: 0.00 -31.50 359.62 -4.10 -35.60 By element: Atomic # 1 Polarization: -23.81 SS G_CDS: -0.33 Total: -24.13 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 4.46 Total: 7.67 kcal Atomic # 7 Polarization: 3.43 SS G_CDS: -2.51 Total: 0.92 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -6.36 Total: -15.17 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.13 Total: -0.69 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -1.49 Total: -4.19 kcal Total: -31.50 -4.10 -35.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.238 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds