Wall clock time and date at job start Mon Mar 8 2021 10:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33387 * 125.20415 * 2 1 4 4 C 1.50700 * 122.53808 * 0.02824 * 3 2 1 5 5 O 1.42896 * 109.47258 * 66.19747 * 4 3 2 6 6 Si 1.86307 * 109.46992 * 306.19621 * 4 3 2 7 7 C 1.38419 * 114.92083 * 179.76166 * 3 2 1 8 8 S 1.76197 * 122.53909 * 180.26896 * 7 3 2 9 9 O 1.42102 * 106.40598 * 31.35790 * 8 7 3 10 10 O 1.42099 * 106.40385 * 164.27525 * 8 7 3 11 11 N 1.65602 * 107.21965 * 277.81477 * 8 7 3 12 12 C 1.46499 * 119.99588 * 65.00275 * 11 8 7 13 13 C 1.52993 * 109.47087 * 165.00277 * 12 11 8 14 14 H 1.09003 * 112.85305 * 43.79534 * 13 12 11 15 15 C 1.53782 * 113.61766 * 174.99677 * 13 12 11 16 16 C 1.53780 * 87.08382 * 139.97947 * 15 13 12 17 17 H 1.08997 * 113.61587 * 89.11837 * 16 15 13 18 18 N 1.46507 * 113.61576 * 220.02249 * 16 15 13 19 19 C 1.35306 * 125.86654 * 84.71305 * 18 16 15 20 20 C 1.35355 * 106.17229 * 179.90834 * 19 18 16 21 21 N 1.33764 * 106.49345 * 0.34741 * 20 19 18 22 22 N 1.28628 * 108.89263 * 359.77664 * 21 20 19 23 23 C 1.53786 * 113.61198 * 272.49277 * 13 12 11 24 24 C 1.33387 * 114.92248 * 0.24353 * 7 3 2 25 25 C 1.50701 * 125.20481 * 179.97438 * 24 7 3 26 26 S 1.75887 * 109.59515 * 0.02562 * 24 7 3 27 27 H 1.09000 * 109.47453 * 91.89375 * 1 2 3 28 28 H 1.09004 * 109.47286 * 211.89996 * 1 2 3 29 29 H 1.09002 * 109.47294 * 331.89335 * 1 2 3 30 30 H 1.09002 * 109.47110 * 186.19783 * 4 3 2 31 31 H 0.96698 * 114.00087 * 66.10337 * 5 4 3 32 32 H 1.48503 * 109.99794 * 306.97765 * 6 4 3 33 33 H 1.48495 * 109.99832 * 68.29925 * 6 4 3 34 34 H 0.96993 * 119.99890 * 244.99718 * 11 8 7 35 35 H 1.09004 * 109.46804 * 284.99830 * 12 11 8 36 36 H 1.08997 * 109.47513 * 44.99805 * 12 11 8 37 37 H 1.08992 * 113.61731 * 254.52930 * 15 13 12 38 38 H 1.09000 * 113.61345 * 25.35109 * 15 13 12 39 39 H 1.08007 * 126.91693 * 0.02562 * 19 18 16 40 40 H 1.07997 * 126.75094 * 180.13099 * 20 19 18 41 41 H 1.08996 * 113.61722 * 334.57085 * 23 13 12 42 42 H 1.09009 * 113.61230 * 105.47343 * 23 13 12 43 43 H 1.08999 * 109.47182 * 84.48433 * 25 24 7 44 44 H 1.09000 * 109.47459 * 204.48482 * 25 24 7 45 45 H 1.09000 * 109.46733 * 324.48557 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7051 2.4846 0.0006 5 8 1.0220 2.7192 1.2336 6 14 0.5093 2.6668 -1.4164 7 6 3.6379 0.8428 0.0052 8 16 4.8355 2.1352 0.0132 9 8 4.2516 3.2192 0.7225 10 8 6.0692 1.5368 0.3865 11 7 5.0177 2.6444 -1.5520 12 6 3.8987 3.2831 -2.2493 13 6 4.4149 3.9832 -3.5079 14 1 5.1278 3.3772 -4.0672 15 6 3.2998 4.5842 -4.3799 16 6 4.2295 5.7892 -4.6001 17 1 4.8924 5.6782 -5.4582 18 7 3.5339 7.0785 -4.5799 19 6 3.2330 7.7997 -3.4753 20 6 2.5984 8.9123 -3.9129 21 7 2.5362 8.8148 -5.2455 22 7 3.0992 7.7171 -5.6095 23 6 4.8899 5.4246 -3.2600 24 6 3.9750 -0.4477 0.0043 25 6 5.3860 -0.9771 0.0087 26 16 2.5209 -1.4373 -0.0042 27 1 -0.3634 -0.0340 -1.0271 28 1 -0.3634 -0.8725 0.5431 29 1 -0.3634 0.9065 0.4841 30 1 2.5130 3.2079 -0.1104 31 1 1.6013 2.7330 2.0077 32 1 1.1625 2.2625 -2.6873 33 1 -0.6944 1.8313 -1.1756 34 1 5.8651 2.5199 -2.0070 35 1 3.1656 2.5264 -2.5293 36 1 3.4313 4.0159 -1.5917 37 1 3.1006 4.0148 -5.2877 38 1 2.3937 4.8260 -3.8244 39 1 3.4560 7.5407 -2.4508 40 1 2.2144 9.7184 -3.3053 41 1 4.4191 5.8974 -2.3982 42 1 5.9746 5.5337 -3.2639 43 1 5.7571 -1.0140 1.0329 44 1 5.3993 -1.9797 -0.4188 45 1 6.0222 -0.3205 -0.5848 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567540_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:18 Heat of formation + Delta-G solvation = 73.133849 kcal Electronic energy + Delta-G solvation = -32628.199090 eV Core-core repulsion = 28291.231271 eV Total energy + Delta-G solvation = -4336.967820 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.096 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -44.18619 -40.81499 -40.37899 -38.67152 -37.09793 -37.04942 -36.45495 -34.42852 -33.97246 -31.92787 -31.04125 -29.03145 -28.10920 -27.31087 -26.11526 -25.27752 -23.56644 -23.35316 -22.47112 -21.26343 -20.67270 -20.04377 -19.34479 -18.86763 -18.55778 -18.21241 -17.57846 -17.44626 -17.03302 -16.77424 -16.35101 -15.99978 -15.87142 -15.66471 -15.46290 -15.28420 -15.04562 -14.89374 -14.58953 -14.37148 -14.01171 -13.97098 -13.94703 -13.82785 -13.65676 -13.51833 -13.33998 -13.30332 -13.00769 -12.85097 -12.78976 -12.69558 -12.59192 -12.28962 -11.99464 -11.84137 -11.74189 -11.66692 -11.35591 -11.00899 -10.95495 -10.79418 -10.27469 -10.14946 -9.67604 -5.01353 -0.93603 -0.56608 0.23620 0.56604 0.67348 0.71670 1.20225 1.33520 1.46242 1.73767 1.80681 1.84988 2.46989 2.74349 2.86455 3.04082 3.13990 3.22383 3.32577 3.55903 3.58905 3.61697 3.72755 3.79450 3.87308 3.97748 4.02319 4.07406 4.10212 4.14753 4.23359 4.27308 4.32549 4.35646 4.36477 4.38414 4.41299 4.51109 4.51871 4.57142 4.76875 4.77869 4.87819 4.89141 4.92727 5.08510 5.28335 5.59718 5.65779 6.52962 7.64340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.169 4.169 3 C -0.080 4.080 4 C -0.086 4.086 5 O -0.527 6.527 6 Si 0.712 3.288 7 C -0.689 4.689 8 S 2.706 3.294 9 O -0.946 6.946 10 O -0.949 6.949 11 N -1.114 6.114 12 C 0.114 3.886 13 C -0.111 4.111 14 H 0.114 0.886 15 C -0.138 4.138 16 C 0.117 3.883 17 H 0.137 0.863 18 N -0.282 5.282 19 C -0.051 4.051 20 C -0.049 4.049 21 N -0.272 5.272 22 N -0.086 5.086 23 C -0.141 4.141 24 C -0.048 4.048 25 C -0.112 4.112 26 S 0.159 5.841 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.372 0.628 32 H -0.243 1.243 33 H -0.229 1.229 34 H 0.422 0.578 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.191 0.809 40 H 0.191 0.809 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -3.495 0.178 3.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.287 4.287 3 C -0.090 4.090 4 C -0.197 4.197 5 O -0.333 6.333 6 Si 0.609 3.391 7 C -0.788 4.788 8 S 2.794 3.206 9 O -0.936 6.936 10 O -0.939 6.939 11 N -0.875 5.875 12 C -0.011 4.011 13 C -0.131 4.131 14 H 0.132 0.868 15 C -0.177 4.177 16 C 0.015 3.985 17 H 0.155 0.845 18 N -0.076 5.076 19 C -0.202 4.202 20 C -0.206 4.206 21 N -0.137 5.137 22 N -0.065 5.065 23 C -0.179 4.179 24 C -0.169 4.169 25 C -0.171 4.171 26 S 0.426 5.574 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.220 0.780 32 H -0.168 1.168 33 H -0.153 1.153 34 H 0.258 0.742 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.208 0.792 40 H 0.208 0.792 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.152 -5.132 -1.585 5.373 hybrid contribution 1.469 -0.278 1.767 2.314 sum 1.621 -5.410 0.181 5.651 Atomic orbital electron populations 1.20819 0.87058 1.04912 1.03042 1.24488 1.00453 0.95055 1.08662 1.18625 0.90156 0.97221 1.03009 1.25631 1.05641 0.91335 0.97111 1.86630 1.37019 1.94170 1.15442 0.94250 0.80255 0.90913 0.73652 1.29518 1.11805 1.13463 1.24016 1.01610 0.73094 0.73453 0.72469 1.93555 1.78506 1.51670 1.69851 1.93617 1.41720 1.77847 1.80706 1.55513 1.21967 1.75478 1.34530 1.21644 0.88306 0.97264 0.93932 1.22572 0.99031 0.95511 0.96027 0.86802 1.23509 0.97889 0.94842 1.01476 1.23354 0.95447 0.77869 1.01861 0.84495 1.47493 1.37763 1.17198 1.05118 1.23633 1.06397 0.95134 0.95010 1.23687 1.04518 1.00135 0.92284 1.75157 1.15970 1.10249 1.12371 1.78347 1.13110 1.02358 1.12731 1.23635 1.02847 0.95468 0.95943 1.24639 1.00825 0.95005 0.96426 1.20955 0.88055 1.02345 1.05697 1.84483 0.95224 1.08583 1.69136 0.90445 0.90481 0.88205 0.88799 0.77960 1.16758 1.15288 0.74213 0.90803 0.89325 0.88790 0.88084 0.79234 0.79210 0.87757 0.88754 0.88072 0.90075 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 8.10 36.01 0.29 0.27 16 2 C -0.17 -0.18 6.09 -36.00 -0.22 -0.40 16 3 C -0.08 -0.08 4.52 -106.25 -0.48 -0.56 16 4 C -0.09 -0.02 1.96 36.01 0.07 0.05 16 5 O -0.53 -0.48 11.61 -35.23 -0.41 -0.89 16 6 Si 0.71 -0.86 28.11 -169.99 -4.78 -5.64 16 7 C -0.69 -0.44 5.85 -41.21 -0.24 -0.68 16 8 S 2.71 -0.01 5.37 -107.50 -0.58 -0.59 16 9 O -0.95 -1.79 14.60 -57.17 -0.83 -2.62 16 10 O -0.95 -1.82 14.74 -57.17 -0.84 -2.67 16 11 N -1.11 3.91 6.00 -10.62 -0.06 3.84 16 12 C 0.11 -0.47 4.44 -4.05 -0.02 -0.48 16 13 C -0.11 0.63 3.79 -89.81 -0.34 0.29 16 14 H 0.11 -0.81 8.12 -51.93 -0.42 -1.23 16 15 C -0.14 0.63 7.44 -25.92 -0.19 0.44 16 16 C 0.12 -0.42 4.96 -67.11 -0.33 -0.75 16 17 H 0.14 -0.59 8.14 -51.93 -0.42 -1.02 16 18 N -0.28 0.02 3.53 -53.96 -0.19 -0.17 16 19 C -0.05 0.06 10.78 -17.05 -0.18 -0.12 16 20 C -0.05 -0.04 12.05 -17.74 -0.21 -0.26 16 21 N -0.27 -1.27 12.41 30.23 0.38 -0.89 16 22 N -0.09 -0.33 13.17 60.35 0.79 0.46 16 23 C -0.14 0.76 6.98 -25.91 -0.18 0.58 16 24 C -0.05 -0.01 6.50 -36.00 -0.23 -0.25 16 25 C -0.11 0.14 8.91 36.01 0.32 0.46 16 26 S 0.16 0.02 23.31 -107.50 -2.51 -2.49 16 27 H 0.08 -0.02 6.85 -51.93 -0.36 -0.37 16 28 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 29 H 0.10 0.08 5.35 -51.93 -0.28 -0.20 16 30 H 0.09 -0.05 2.67 -51.93 -0.14 -0.19 16 31 H 0.37 -0.23 9.12 45.56 0.42 0.19 16 32 H -0.24 0.29 6.23 56.52 0.35 0.64 16 33 H -0.23 -0.06 4.98 56.52 0.28 0.22 16 34 H 0.42 -2.42 8.64 -34.47 -0.30 -2.71 16 35 H 0.07 -0.28 5.87 -51.93 -0.30 -0.59 16 36 H 0.09 -0.40 5.95 -51.93 -0.31 -0.71 16 37 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 38 H 0.10 -0.45 8.10 -51.93 -0.42 -0.88 16 39 H 0.19 -0.95 6.73 -52.48 -0.35 -1.31 16 40 H 0.19 -0.40 8.06 -52.49 -0.42 -0.82 16 41 H 0.10 -0.61 6.08 -51.93 -0.32 -0.93 16 42 H 0.09 -0.57 8.14 -51.92 -0.42 -1.00 16 43 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 44 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 45 H 0.10 -0.17 6.33 -51.93 -0.33 -0.49 16 LS Contribution 373.18 15.07 5.62 5.62 Total: 0.00 -10.59 373.18 -10.80 -21.39 By element: Atomic # 1 Polarization: -8.51 SS G_CDS: -5.44 Total: -13.95 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.96 Total: -1.42 kcal Atomic # 7 Polarization: 2.32 SS G_CDS: 0.92 Total: 3.24 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -2.09 Total: -6.18 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -4.78 Total: -5.64 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -3.08 Total: -3.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -10.59 -10.80 -21.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.521 kcal (2) G-P(sol) polarization free energy of solvation -10.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds