Wall clock time and date at job start Mon Mar 8 2021 10:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33387 * 125.20415 * 2 1 4 4 C 1.50700 * 122.53808 * 0.02824 * 3 2 1 5 5 O 1.42896 * 109.47258 * 66.19747 * 4 3 2 6 6 Si 1.86307 * 109.46992 * 306.19621 * 4 3 2 7 7 C 1.38419 * 114.92083 * 179.76166 * 3 2 1 8 8 S 1.76197 * 122.53909 * 180.26896 * 7 3 2 9 9 O 1.42102 * 106.40598 * 31.35790 * 8 7 3 10 10 O 1.42099 * 106.40385 * 164.27525 * 8 7 3 11 11 N 1.65602 * 107.21965 * 277.81477 * 8 7 3 12 12 C 1.46499 * 119.99588 * 65.00275 * 11 8 7 13 13 C 1.52993 * 109.47087 * 165.00277 * 12 11 8 14 14 H 1.09003 * 112.85305 * 43.79534 * 13 12 11 15 15 C 1.53782 * 113.61766 * 174.99677 * 13 12 11 16 16 C 1.53780 * 87.08382 * 139.97947 * 15 13 12 17 17 H 1.08997 * 113.61587 * 89.11837 * 16 15 13 18 18 N 1.46507 * 113.61576 * 220.02249 * 16 15 13 19 19 C 1.35306 * 125.86654 * 84.71305 * 18 16 15 20 20 C 1.35355 * 106.17229 * 179.90834 * 19 18 16 21 21 N 1.33764 * 106.49345 * 0.34741 * 20 19 18 22 22 N 1.28628 * 108.89263 * 359.77664 * 21 20 19 23 23 C 1.53786 * 113.61198 * 272.49277 * 13 12 11 24 24 C 1.33387 * 114.92248 * 0.24353 * 7 3 2 25 25 C 1.50701 * 125.20481 * 179.97438 * 24 7 3 26 26 S 1.75887 * 109.59515 * 0.02562 * 24 7 3 27 27 H 1.09000 * 109.47453 * 91.89375 * 1 2 3 28 28 H 1.09004 * 109.47286 * 211.89996 * 1 2 3 29 29 H 1.09002 * 109.47294 * 331.89335 * 1 2 3 30 30 H 1.09002 * 109.47110 * 186.19783 * 4 3 2 31 31 H 0.96698 * 114.00087 * 66.10337 * 5 4 3 32 32 H 1.48503 * 109.99794 * 306.97765 * 6 4 3 33 33 H 1.48495 * 109.99832 * 68.29925 * 6 4 3 34 34 H 0.96993 * 119.99890 * 244.99718 * 11 8 7 35 35 H 1.09004 * 109.46804 * 284.99830 * 12 11 8 36 36 H 1.08997 * 109.47513 * 44.99805 * 12 11 8 37 37 H 1.08992 * 113.61731 * 254.52930 * 15 13 12 38 38 H 1.09000 * 113.61345 * 25.35109 * 15 13 12 39 39 H 1.08007 * 126.91693 * 0.02562 * 19 18 16 40 40 H 1.07997 * 126.75094 * 180.13099 * 20 19 18 41 41 H 1.08996 * 113.61722 * 334.57085 * 23 13 12 42 42 H 1.09009 * 113.61230 * 105.47343 * 23 13 12 43 43 H 1.08999 * 109.47182 * 84.48433 * 25 24 7 44 44 H 1.09000 * 109.47459 * 204.48482 * 25 24 7 45 45 H 1.09000 * 109.46733 * 324.48557 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7051 2.4846 0.0006 5 8 1.0220 2.7192 1.2336 6 14 0.5093 2.6668 -1.4164 7 6 3.6379 0.8428 0.0052 8 16 4.8355 2.1352 0.0132 9 8 4.2516 3.2192 0.7225 10 8 6.0692 1.5368 0.3865 11 7 5.0177 2.6444 -1.5520 12 6 3.8987 3.2831 -2.2493 13 6 4.4149 3.9832 -3.5079 14 1 5.1278 3.3772 -4.0672 15 6 3.2998 4.5842 -4.3799 16 6 4.2295 5.7892 -4.6001 17 1 4.8924 5.6782 -5.4582 18 7 3.5339 7.0785 -4.5799 19 6 3.2330 7.7997 -3.4753 20 6 2.5984 8.9123 -3.9129 21 7 2.5362 8.8148 -5.2455 22 7 3.0992 7.7171 -5.6095 23 6 4.8899 5.4246 -3.2600 24 6 3.9750 -0.4477 0.0043 25 6 5.3860 -0.9771 0.0087 26 16 2.5209 -1.4373 -0.0042 27 1 -0.3634 -0.0340 -1.0271 28 1 -0.3634 -0.8725 0.5431 29 1 -0.3634 0.9065 0.4841 30 1 2.5130 3.2079 -0.1104 31 1 1.6013 2.7330 2.0077 32 1 1.1625 2.2625 -2.6873 33 1 -0.6944 1.8313 -1.1756 34 1 5.8651 2.5199 -2.0070 35 1 3.1656 2.5264 -2.5293 36 1 3.4313 4.0159 -1.5917 37 1 3.1006 4.0148 -5.2877 38 1 2.3937 4.8260 -3.8244 39 1 3.4560 7.5407 -2.4508 40 1 2.2144 9.7184 -3.3053 41 1 4.4191 5.8974 -2.3982 42 1 5.9746 5.5337 -3.2639 43 1 5.7571 -1.0140 1.0329 44 1 5.3993 -1.9797 -0.4188 45 1 6.0222 -0.3205 -0.5848 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567540_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:17 Heat of formation + Delta-G solvation = 69.091664 kcal Electronic energy + Delta-G solvation = -32628.374373 eV Core-core repulsion = 28291.231271 eV Total energy + Delta-G solvation = -4337.143102 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.096 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.16660 -40.53749 -40.30427 -38.70074 -37.13994 -37.06272 -36.23372 -34.40349 -33.89541 -31.91142 -31.00118 -28.78383 -28.05280 -26.89841 -26.09582 -25.10975 -23.52581 -23.31610 -22.31591 -21.09300 -20.52714 -19.97148 -19.23579 -18.74637 -18.48595 -18.20361 -17.45341 -17.27379 -16.96307 -16.58137 -16.30084 -15.87967 -15.75909 -15.47533 -15.42897 -15.23537 -14.92468 -14.81758 -14.56091 -14.31564 -13.96198 -13.82468 -13.61943 -13.58143 -13.54496 -13.48006 -13.35429 -13.19582 -12.92752 -12.79334 -12.68010 -12.63028 -12.49058 -11.99202 -11.84726 -11.70282 -11.65691 -11.51904 -11.33893 -10.95956 -10.89236 -10.55528 -10.27254 -10.13920 -9.67344 -4.91423 -0.88621 -0.56496 0.25263 0.56987 0.71439 0.72488 1.26552 1.52529 1.55549 1.69130 1.92073 1.94030 2.52208 3.05904 3.09874 3.28254 3.37987 3.50679 3.57324 3.63577 3.75437 3.76430 3.90100 3.95640 4.05320 4.13091 4.22592 4.26547 4.32860 4.34907 4.37257 4.46478 4.48827 4.50296 4.58699 4.63434 4.67064 4.79041 4.82173 4.85451 4.88610 4.95103 5.00912 5.02649 5.10048 5.26941 5.35983 5.79703 5.98426 6.56744 7.60286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.187 4.187 3 C -0.086 4.086 4 C -0.099 4.099 5 O -0.538 6.538 6 Si 0.753 3.247 7 C -0.699 4.699 8 S 2.718 3.282 9 O -0.967 6.967 10 O -0.970 6.970 11 N -1.099 6.099 12 C 0.103 3.897 13 C -0.098 4.098 14 H 0.132 0.868 15 C -0.139 4.139 16 C 0.102 3.898 17 H 0.141 0.859 18 N -0.275 5.275 19 C -0.036 4.036 20 C -0.067 4.067 21 N -0.320 5.320 22 N -0.130 5.130 23 C -0.135 4.135 24 C -0.051 4.051 25 C -0.118 4.118 26 S 0.166 5.834 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.376 0.624 32 H -0.240 1.240 33 H -0.254 1.254 34 H 0.434 0.566 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.211 0.789 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -4.025 0.469 4.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.305 4.305 3 C -0.097 4.097 4 C -0.209 4.209 5 O -0.344 6.344 6 Si 0.650 3.350 7 C -0.797 4.797 8 S 2.806 3.194 9 O -0.957 6.957 10 O -0.960 6.960 11 N -0.864 5.864 12 C -0.022 4.022 13 C -0.118 4.118 14 H 0.150 0.850 15 C -0.179 4.179 16 C 0.002 3.998 17 H 0.159 0.841 18 N -0.069 5.069 19 C -0.187 4.187 20 C -0.225 4.225 21 N -0.185 5.185 22 N -0.109 5.109 23 C -0.173 4.173 24 C -0.173 4.173 25 C -0.176 4.176 26 S 0.432 5.568 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.225 0.775 32 H -0.165 1.165 33 H -0.179 1.179 34 H 0.273 0.727 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.246 0.754 40 H 0.228 0.772 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.070 -5.676 -1.309 5.922 hybrid contribution 1.191 -0.168 1.731 2.108 sum 2.261 -5.844 0.422 6.280 Atomic orbital electron populations 1.20823 0.86857 1.04905 1.03255 1.24669 1.00895 0.95605 1.09330 1.18783 0.90408 0.97595 1.02881 1.25911 1.06468 0.91203 0.97312 1.86603 1.37612 1.94189 1.15962 0.93856 0.78269 0.90054 0.72802 1.29626 1.11816 1.13868 1.24415 1.01095 0.72324 0.72924 0.73098 1.93526 1.78772 1.52289 1.71078 1.93585 1.42594 1.78196 1.81668 1.55205 1.22798 1.74944 1.33422 1.21843 0.88172 0.97548 0.94677 1.22522 0.98774 0.95461 0.95087 0.84980 1.23550 0.98114 0.94374 1.01827 1.23748 0.95966 0.76726 1.03363 0.84091 1.47809 1.36653 1.17678 1.04725 1.24229 1.04405 0.93889 0.96205 1.24217 1.05145 1.01721 0.91441 1.75077 1.17535 1.11321 1.14573 1.78256 1.15077 1.03099 1.14426 1.23703 1.03542 0.95199 0.94904 1.24887 1.01442 0.95022 0.95904 1.21078 0.87221 1.03444 1.05848 1.84394 0.95090 1.08230 1.69066 0.90191 0.89733 0.88959 0.88048 0.77503 1.16478 1.17856 0.72748 0.90923 0.88761 0.88654 0.88105 0.75374 0.77194 0.86969 0.87563 0.88240 0.88349 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.11 8.10 71.24 0.58 0.47 16 2 C -0.19 -0.46 6.09 24.59 0.15 -0.31 16 3 C -0.09 -0.18 4.52 -20.92 -0.09 -0.28 16 4 C -0.10 -0.04 1.96 71.24 0.14 0.10 16 5 O -0.54 -1.22 11.61 -148.98 -1.73 -2.94 16 6 Si 0.75 -1.95 28.11 68.60 1.93 -0.03 16 7 C -0.70 -0.80 5.85 21.21 0.12 -0.67 16 8 S 2.72 -1.34 5.37 -56.49 -0.30 -1.65 16 9 O -0.97 -3.31 14.60 -128.00 -1.87 -5.18 16 10 O -0.97 -3.41 14.74 -128.00 -1.89 -5.30 16 11 N -1.10 9.25 6.00 -187.50 -1.12 8.12 16 12 C 0.10 -1.00 4.44 86.38 0.38 -0.62 16 13 C -0.10 1.31 3.79 -10.27 -0.04 1.27 16 14 H 0.13 -2.21 8.12 -2.39 -0.02 -2.23 16 15 C -0.14 1.44 7.44 31.12 0.23 1.67 16 16 C 0.10 -0.84 4.96 45.52 0.23 -0.61 16 17 H 0.14 -1.30 8.14 -2.39 -0.02 -1.32 16 18 N -0.27 0.11 3.53 -324.64 -1.15 -1.04 16 19 C -0.04 0.13 10.78 83.49 0.90 1.03 16 20 C -0.07 -0.13 12.05 83.73 1.01 0.88 16 21 N -0.32 -3.45 12.41 -58.26 -0.72 -4.17 16 22 N -0.13 -1.16 13.17 37.02 0.49 -0.67 16 23 C -0.14 1.76 6.98 31.12 0.22 1.98 16 24 C -0.05 -0.02 6.50 24.59 0.16 0.14 16 25 C -0.12 0.35 8.91 71.24 0.63 0.98 16 26 S 0.17 0.05 23.31 -56.49 -1.32 -1.27 16 27 H 0.08 0.01 6.85 -2.39 -0.02 0.00 16 28 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 29 H 0.09 0.23 5.35 -2.39 -0.01 0.22 16 30 H 0.10 -0.16 2.67 -2.39 -0.01 -0.17 16 31 H 0.38 -0.17 9.12 -74.06 -0.68 -0.85 16 32 H -0.24 0.78 6.23 99.48 0.62 1.40 16 33 H -0.25 -0.31 4.98 99.48 0.50 0.19 16 34 H 0.43 -5.74 8.64 -96.75 -0.84 -6.58 16 35 H 0.07 -0.65 5.87 -2.38 -0.01 -0.67 16 36 H 0.09 -1.00 5.95 -2.39 -0.01 -1.02 16 37 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.10 -1.02 8.10 -2.39 -0.02 -1.04 16 39 H 0.23 -2.92 6.73 -2.91 -0.02 -2.94 16 40 H 0.21 -0.91 8.06 -2.91 -0.02 -0.93 16 41 H 0.11 -1.62 6.08 -2.39 -0.01 -1.64 16 42 H 0.11 -1.57 8.14 -2.38 -0.02 -1.59 16 43 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.11 -0.41 6.33 -2.39 -0.02 -0.43 16 Total: 0.00 -26.00 373.18 -3.75 -29.76 By element: Atomic # 1 Polarization: -20.96 SS G_CDS: -0.69 Total: -21.65 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 4.62 Total: 6.02 kcal Atomic # 7 Polarization: 4.74 SS G_CDS: -2.51 Total: 2.24 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -5.49 Total: -13.43 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 1.93 Total: -0.03 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -1.62 Total: -2.92 kcal Total: -26.00 -3.75 -29.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.847 kcal (2) G-P(sol) polarization free energy of solvation -26.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds