Wall clock time and date at job start Mon Mar 8 2021 10:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.46872 * 2 1 4 4 C 1.50697 * 109.47333 * 120.00316 * 2 1 3 5 5 C 1.33392 * 122.53973 * 75.00308 * 4 2 1 6 6 S 1.76195 * 125.20438 * 359.97438 * 5 4 2 7 7 O 1.42104 * 106.40345 * 336.46797 * 6 5 4 8 8 O 1.42097 * 106.40526 * 203.54244 * 6 5 4 9 9 N 1.65608 * 107.21632 * 90.00207 * 6 5 4 10 10 C 1.46497 * 119.99652 * 65.00196 * 9 6 5 11 11 C 1.53003 * 109.47258 * 165.00222 * 10 9 6 12 12 H 1.09001 * 112.84740 * 43.79467 * 11 10 9 13 13 C 1.53774 * 113.61982 * 175.00148 * 11 10 9 14 14 C 1.53770 * 87.08459 * 139.97626 * 13 11 10 15 15 H 1.09003 * 113.61343 * 89.11545 * 14 13 11 16 16 N 1.46501 * 113.61661 * 219.93142 * 14 13 11 17 17 C 1.34427 * 126.81785 * 85.00293 * 16 14 13 18 18 N 1.30836 * 108.07713 * 179.97438 * 17 16 14 19 19 C 1.33248 * 109.82621 * 359.97438 * 18 17 16 20 20 N 1.30711 * 108.94260 * 359.75047 * 19 18 17 21 21 C 1.53773 * 87.08386 * 334.56720 * 14 13 11 22 22 S 1.75885 * 109.59050 * 180.26413 * 5 4 2 23 23 C 1.75884 * 90.97229 * 359.68257 * 22 5 4 24 24 C 1.33386 * 109.59097 * 0.31506 * 23 22 5 25 25 H 0.96694 * 114.00428 * 60.00205 * 1 2 3 26 26 H 1.09001 * 109.46969 * 240.00594 * 2 1 3 27 27 H 1.48492 * 110.00364 * 298.68295 * 3 2 1 28 28 H 1.48507 * 110.00009 * 60.00601 * 3 2 1 29 29 H 0.96997 * 120.00222 * 245.00273 * 9 6 5 30 30 H 1.09005 * 109.47021 * 284.99543 * 10 9 6 31 31 H 1.09000 * 109.47724 * 44.99713 * 10 9 6 32 32 H 1.09000 * 113.61148 * 254.52928 * 13 11 10 33 33 H 1.09003 * 113.61412 * 25.34338 * 13 11 10 34 34 H 1.08004 * 125.96356 * 359.97438 * 17 16 14 35 35 H 1.08000 * 125.52287 * 180.02562 * 19 18 17 36 36 H 1.09002 * 113.61741 * 270.88767 * 21 14 13 37 37 H 1.09000 * 113.62070 * 139.98063 * 21 14 13 38 38 H 1.07996 * 125.20022 * 180.02562 * 23 22 5 39 39 H 1.08008 * 122.53672 * 179.73436 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8962 -2.0379 1.3570 6 16 1.2753 -3.1576 0.1466 7 8 0.3679 -2.4166 -0.6576 8 8 0.9085 -4.3399 0.8443 9 7 2.5429 -3.5690 -0.8365 10 6 3.6772 -4.3203 -0.2934 11 6 4.5098 -4.8895 -1.4439 12 1 4.6703 -4.1698 -2.2467 13 6 5.7959 -5.5955 -0.9833 14 6 5.5067 -6.6546 -2.0599 15 1 5.9395 -6.4185 -3.0321 16 7 5.7930 -8.0247 -1.6273 17 6 4.9737 -8.8411 -0.9423 18 7 5.5973 -9.9754 -0.7516 19 6 6.8111 -9.9213 -1.2985 20 7 6.9754 -8.7485 -1.8518 21 6 4.0247 -6.2640 -1.9343 22 16 2.5568 -2.4988 2.9206 23 6 2.8612 -0.8137 3.3223 24 6 2.4639 -0.0350 2.3149 25 1 -0.3934 0.4416 -0.7650 26 1 1.7923 -0.5137 -0.8900 27 1 1.5878 2.4586 -1.2241 28 1 1.5614 2.4679 1.2086 29 1 2.5343 -3.3125 -1.7719 30 1 4.2969 -3.6570 0.3100 31 1 3.3085 -5.1372 0.3270 32 1 6.7016 -5.0186 -1.1704 33 1 5.7420 -5.9802 0.0352 34 1 3.9749 -8.6024 -0.6078 35 1 7.5393 -10.7189 -1.2901 36 1 3.4859 -6.8327 -1.1763 37 1 3.5003 -6.2268 -2.8891 38 1 3.2982 -0.4630 4.2455 39 1 2.5508 1.0412 2.3434 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567542_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:31 Heat of formation + Delta-G solvation = 68.412839 kcal Electronic energy + Delta-G solvation = -27280.428429 eV Core-core repulsion = 23254.331129 eV Total energy + Delta-G solvation = -4026.097300 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.09245 -40.58656 -40.01774 -38.15922 -37.17600 -36.82707 -36.25374 -33.35565 -32.08010 -31.54149 -28.66801 -28.06143 -27.22960 -25.08697 -24.23149 -22.95120 -22.51216 -21.60859 -20.84843 -19.91284 -19.37980 -18.78637 -18.60712 -18.16148 -17.44587 -17.22438 -17.06257 -16.38296 -16.14462 -15.98354 -15.78713 -15.61152 -15.42128 -15.09828 -14.66325 -14.31175 -14.24536 -13.97078 -13.87054 -13.70611 -13.67004 -13.35467 -13.07471 -12.98661 -12.73755 -12.68766 -12.53839 -12.52292 -12.40652 -12.14892 -11.80783 -11.64490 -10.92611 -10.80232 -10.72147 -10.59018 -10.53586 -10.44598 -9.69926 -5.10903 -0.86438 -0.58064 0.25181 0.59455 0.66818 1.11012 1.14666 1.28369 1.48377 1.83565 1.91980 2.06732 2.62296 2.86160 2.99206 3.17736 3.25159 3.28451 3.38295 3.51054 3.69336 3.76615 3.84245 3.89191 3.98422 4.04581 4.08122 4.18567 4.20156 4.28240 4.34990 4.41893 4.49516 4.60751 4.64537 4.66091 4.83385 4.93908 4.98831 5.34786 5.49895 5.71703 5.82991 6.47874 7.16313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.509 6.509 2 C -0.076 4.076 3 Si 0.686 3.314 4 C 0.056 3.944 5 C -0.780 4.780 6 S 2.714 3.286 7 O -0.928 6.928 8 O -0.950 6.950 9 N -1.115 6.115 10 C 0.124 3.876 11 C -0.110 4.110 12 H 0.112 0.888 13 C -0.137 4.137 14 C 0.132 3.868 15 H 0.128 0.872 16 N -0.370 5.370 17 C 0.253 3.747 18 N -0.545 5.545 19 C 0.198 3.802 20 N -0.320 5.320 21 C -0.143 4.143 22 S 0.225 5.775 23 C -0.163 4.163 24 C -0.164 4.164 25 H 0.384 0.616 26 H 0.080 0.920 27 H -0.255 1.255 28 H -0.251 1.251 29 H 0.421 0.579 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.217 0.783 35 H 0.218 0.782 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.180 0.820 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 4.832 -0.968 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.317 6.317 2 C -0.188 4.188 3 Si 0.586 3.414 4 C 0.039 3.961 5 C -0.981 4.981 6 S 2.799 3.201 7 O -0.918 6.918 8 O -0.940 6.940 9 N -0.876 5.876 10 C -0.002 4.002 11 C -0.130 4.130 12 H 0.130 0.870 13 C -0.177 4.177 14 C 0.029 3.971 15 H 0.146 0.854 16 N -0.161 5.161 17 C -0.044 4.044 18 N -0.272 5.272 19 C -0.104 4.104 20 N -0.147 5.147 21 C -0.182 4.182 22 S 0.492 5.508 23 C -0.301 4.301 24 C -0.194 4.194 25 H 0.233 0.767 26 H 0.098 0.902 27 H -0.179 1.179 28 H -0.176 1.176 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.233 0.767 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.197 0.803 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.583 3.598 0.305 5.835 hybrid contribution -0.951 1.913 -1.136 2.420 sum 3.632 5.512 -0.831 6.652 Atomic orbital electron populations 1.86613 1.15500 1.80196 1.49374 1.24696 0.86551 1.11110 0.96436 0.95337 0.91119 0.74082 0.80864 1.18041 0.92496 0.90646 0.94945 1.35746 1.27883 1.14222 1.20222 1.01518 0.72380 0.73188 0.73035 1.93664 1.58561 1.72436 1.67119 1.93618 1.80342 1.45493 1.74574 1.55611 1.38157 1.70476 1.23405 1.21366 0.87020 0.95915 0.95924 1.22560 0.95584 0.96202 0.98676 0.86995 1.23489 0.98451 0.96172 0.99545 1.23019 0.97737 0.76244 1.00098 0.85449 1.50572 1.11197 1.13028 1.41287 1.26014 0.98607 0.86240 0.93499 1.70609 1.07288 1.22767 1.26486 1.26085 0.94527 0.95213 0.94621 1.78070 1.04465 1.07003 1.25175 1.23621 0.94196 0.96298 1.04036 1.84319 1.54979 1.05202 1.06312 1.26201 1.03254 0.97168 1.03431 1.20296 1.03614 1.02055 0.93404 0.76745 0.90220 1.17939 1.17567 0.74387 0.90745 0.89676 0.89248 0.88610 0.76687 0.76611 0.88264 0.88971 0.80309 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.02 11.10 -56.66 -0.63 -1.65 16 2 C -0.08 0.02 1.78 36.00 0.06 0.08 16 3 Si 0.69 -1.30 30.42 -169.99 -5.17 -6.47 16 4 C 0.06 0.02 5.17 -106.25 -0.55 -0.53 16 5 C -0.78 -0.53 6.54 29.04 0.19 -0.34 16 6 S 2.71 2.66 5.66 -107.50 -0.61 2.05 16 7 O -0.93 -3.01 14.29 -66.03 -0.94 -3.96 16 8 O -0.95 -3.77 17.38 -57.17 -0.99 -4.76 16 9 N -1.12 3.84 6.00 -10.61 -0.06 3.78 16 10 C 0.12 -0.56 6.06 -4.04 -0.02 -0.58 16 11 C -0.11 0.63 3.79 -89.81 -0.34 0.29 16 12 H 0.11 -0.80 8.12 -51.93 -0.42 -1.22 16 13 C -0.14 0.62 7.44 -25.93 -0.19 0.43 16 14 C 0.13 -0.41 5.07 -67.13 -0.34 -0.75 16 15 H 0.13 -0.45 8.14 -51.93 -0.42 -0.87 16 16 N -0.37 -0.11 3.83 -55.33 -0.21 -0.33 16 17 C 0.25 0.09 11.87 -90.65 -1.08 -0.98 16 18 N -0.54 -1.69 11.19 -15.83 -0.18 -1.87 16 19 C 0.20 0.46 13.03 -91.81 -1.20 -0.73 16 20 N -0.32 -0.94 12.70 29.29 0.37 -0.57 16 21 C -0.14 0.70 7.00 -25.92 -0.18 0.52 16 22 S 0.22 -0.13 23.21 -107.50 -2.50 -2.62 16 23 C -0.16 0.30 11.23 29.04 0.33 0.62 16 24 C -0.16 0.15 8.74 -41.21 -0.36 -0.21 16 25 H 0.38 -0.61 8.74 45.56 0.40 -0.21 16 26 H 0.08 -0.17 7.16 -51.93 -0.37 -0.55 16 27 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 28 H -0.25 -0.19 6.86 56.52 0.39 0.19 16 29 H 0.42 -2.36 8.64 -34.48 -0.30 -2.66 16 30 H 0.07 -0.42 8.14 -51.93 -0.42 -0.84 16 31 H 0.08 -0.34 7.45 -51.93 -0.39 -0.72 16 32 H 0.09 -0.42 8.14 -51.93 -0.42 -0.85 16 33 H 0.10 -0.38 8.10 -51.93 -0.42 -0.80 16 34 H 0.22 -0.74 6.75 -52.48 -0.35 -1.09 16 35 H 0.22 -0.18 8.06 -52.49 -0.42 -0.61 16 36 H 0.10 -0.50 6.15 -51.93 -0.32 -0.82 16 37 H 0.09 -0.50 8.14 -51.93 -0.42 -0.92 16 38 H 0.18 -0.83 8.06 -52.49 -0.42 -1.25 16 39 H 0.16 -0.37 5.57 -52.48 -0.29 -0.66 16 LS Contribution 352.84 15.07 5.32 5.32 Total: 0.00 -13.28 352.84 -13.50 -26.78 By element: Atomic # 1 Polarization: -9.30 SS G_CDS: -4.21 Total: -13.51 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.68 Total: -2.18 kcal Atomic # 7 Polarization: 1.10 SS G_CDS: -0.08 Total: 1.02 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -2.57 Total: -10.37 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.17 Total: -6.47 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -3.10 Total: -0.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -13.28 -13.50 -26.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567542_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.195 kcal (2) G-P(sol) polarization free energy of solvation -13.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds