Wall clock time and date at job start Mon Mar 8 2021 10:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.46872 * 2 1 4 4 C 1.50697 * 109.47333 * 120.00316 * 2 1 3 5 5 C 1.33392 * 122.53973 * 75.00308 * 4 2 1 6 6 S 1.76195 * 125.20438 * 359.97438 * 5 4 2 7 7 O 1.42104 * 106.40345 * 336.46797 * 6 5 4 8 8 O 1.42097 * 106.40526 * 203.54244 * 6 5 4 9 9 N 1.65608 * 107.21632 * 90.00207 * 6 5 4 10 10 C 1.46497 * 119.99652 * 65.00196 * 9 6 5 11 11 C 1.53003 * 109.47258 * 165.00222 * 10 9 6 12 12 H 1.09001 * 112.84740 * 43.79467 * 11 10 9 13 13 C 1.53774 * 113.61982 * 175.00148 * 11 10 9 14 14 C 1.53770 * 87.08459 * 139.97626 * 13 11 10 15 15 H 1.09003 * 113.61343 * 89.11545 * 14 13 11 16 16 N 1.46501 * 113.61661 * 219.93142 * 14 13 11 17 17 C 1.34427 * 126.81785 * 85.00293 * 16 14 13 18 18 N 1.30836 * 108.07713 * 179.97438 * 17 16 14 19 19 C 1.33248 * 109.82621 * 359.97438 * 18 17 16 20 20 N 1.30711 * 108.94260 * 359.75047 * 19 18 17 21 21 C 1.53773 * 87.08386 * 334.56720 * 14 13 11 22 22 S 1.75885 * 109.59050 * 180.26413 * 5 4 2 23 23 C 1.75884 * 90.97229 * 359.68257 * 22 5 4 24 24 C 1.33386 * 109.59097 * 0.31506 * 23 22 5 25 25 H 0.96694 * 114.00428 * 60.00205 * 1 2 3 26 26 H 1.09001 * 109.46969 * 240.00594 * 2 1 3 27 27 H 1.48492 * 110.00364 * 298.68295 * 3 2 1 28 28 H 1.48507 * 110.00009 * 60.00601 * 3 2 1 29 29 H 0.96997 * 120.00222 * 245.00273 * 9 6 5 30 30 H 1.09005 * 109.47021 * 284.99543 * 10 9 6 31 31 H 1.09000 * 109.47724 * 44.99713 * 10 9 6 32 32 H 1.09000 * 113.61148 * 254.52928 * 13 11 10 33 33 H 1.09003 * 113.61412 * 25.34338 * 13 11 10 34 34 H 1.08004 * 125.96356 * 359.97438 * 17 16 14 35 35 H 1.08000 * 125.52287 * 180.02562 * 19 18 17 36 36 H 1.09002 * 113.61741 * 270.88767 * 21 14 13 37 37 H 1.09000 * 113.62070 * 139.98063 * 21 14 13 38 38 H 1.07996 * 125.20022 * 180.02562 * 23 22 5 39 39 H 1.08008 * 122.53672 * 179.73436 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8962 -2.0379 1.3570 6 16 1.2753 -3.1576 0.1466 7 8 0.3679 -2.4166 -0.6576 8 8 0.9085 -4.3399 0.8443 9 7 2.5429 -3.5690 -0.8365 10 6 3.6772 -4.3203 -0.2934 11 6 4.5098 -4.8895 -1.4439 12 1 4.6703 -4.1698 -2.2467 13 6 5.7959 -5.5955 -0.9833 14 6 5.5067 -6.6546 -2.0599 15 1 5.9395 -6.4185 -3.0321 16 7 5.7930 -8.0247 -1.6273 17 6 4.9737 -8.8411 -0.9423 18 7 5.5973 -9.9754 -0.7516 19 6 6.8111 -9.9213 -1.2985 20 7 6.9754 -8.7485 -1.8518 21 6 4.0247 -6.2640 -1.9343 22 16 2.5568 -2.4988 2.9206 23 6 2.8612 -0.8137 3.3223 24 6 2.4639 -0.0350 2.3149 25 1 -0.3934 0.4416 -0.7650 26 1 1.7923 -0.5137 -0.8900 27 1 1.5878 2.4586 -1.2241 28 1 1.5614 2.4679 1.2086 29 1 2.5343 -3.3125 -1.7719 30 1 4.2969 -3.6570 0.3100 31 1 3.3085 -5.1372 0.3270 32 1 6.7016 -5.0186 -1.1704 33 1 5.7420 -5.9802 0.0352 34 1 3.9749 -8.6024 -0.6078 35 1 7.5393 -10.7189 -1.2901 36 1 3.4859 -6.8327 -1.1763 37 1 3.5003 -6.2268 -2.8891 38 1 3.2982 -0.4630 4.2455 39 1 2.5508 1.0412 2.3434 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567542_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:30 Heat of formation + Delta-G solvation = 64.389121 kcal Electronic energy + Delta-G solvation = -27280.602911 eV Core-core repulsion = 23254.331129 eV Total energy + Delta-G solvation = -4026.271781 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.09787 -40.29201 -39.94748 -38.27847 -37.19502 -36.95311 -36.04510 -33.30861 -32.13666 -31.45130 -28.43289 -28.01093 -26.86495 -24.94428 -24.12326 -22.93562 -22.38862 -21.56484 -20.60796 -19.83993 -19.29137 -18.71903 -18.56479 -18.14434 -17.35101 -16.99786 -16.95057 -16.34904 -16.06296 -15.88179 -15.74212 -15.54246 -15.23335 -15.02254 -14.60229 -14.24708 -14.17648 -13.78774 -13.61546 -13.56914 -13.51187 -13.27189 -13.22668 -13.13906 -12.68067 -12.62001 -12.51898 -12.41345 -12.21120 -11.81820 -11.58985 -11.47824 -11.01746 -10.82786 -10.57920 -10.51019 -10.45334 -10.36466 -9.62885 -4.96269 -0.81274 -0.56251 0.31988 0.64979 0.71023 1.22763 1.24417 1.39584 1.60787 1.93973 1.98126 2.01240 2.62600 3.14439 3.25750 3.35910 3.46774 3.48372 3.58488 3.70837 3.85954 3.90190 3.97692 4.12104 4.19005 4.23173 4.32576 4.37031 4.48044 4.64314 4.67719 4.72803 4.78637 4.84696 4.95056 4.98293 5.00852 5.10510 5.23732 5.44247 5.46813 5.91046 6.07960 6.61031 7.11153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.100 4.100 3 Si 0.780 3.220 4 C 0.049 3.951 5 C -0.797 4.797 6 S 2.723 3.277 7 O -0.957 6.957 8 O -0.987 6.987 9 N -1.098 6.098 10 C 0.116 3.884 11 C -0.094 4.094 12 H 0.134 0.866 13 C -0.132 4.132 14 C 0.118 3.882 15 H 0.131 0.869 16 N -0.367 5.367 17 C 0.253 3.747 18 N -0.581 5.581 19 C 0.188 3.812 20 N -0.352 5.352 21 C -0.142 4.142 22 S 0.215 5.785 23 C -0.148 4.148 24 C -0.179 4.179 25 H 0.394 0.606 26 H 0.096 0.904 27 H -0.283 1.283 28 H -0.287 1.287 29 H 0.433 0.567 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.247 0.753 35 H 0.235 0.765 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.209 0.791 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 6.046 -0.989 8.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.210 4.210 3 Si 0.683 3.317 4 C 0.031 3.969 5 C -0.998 4.998 6 S 2.810 3.190 7 O -0.947 6.947 8 O -0.977 6.977 9 N -0.863 5.863 10 C -0.010 4.010 11 C -0.114 4.114 12 H 0.151 0.849 13 C -0.172 4.172 14 C 0.017 3.983 15 H 0.149 0.851 16 N -0.158 5.158 17 C -0.043 4.043 18 N -0.309 5.309 19 C -0.115 4.115 20 N -0.179 5.179 21 C -0.180 4.180 22 S 0.482 5.518 23 C -0.286 4.286 24 C -0.208 4.208 25 H 0.245 0.755 26 H 0.114 0.886 27 H -0.210 1.210 28 H -0.214 1.214 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.263 0.737 35 H 0.251 0.749 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.226 0.774 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.348 4.806 0.249 7.194 hybrid contribution -1.192 1.576 -1.110 2.267 sum 4.156 6.382 -0.861 7.664 Atomic orbital electron populations 1.86566 1.16985 1.80886 1.50337 1.25147 0.85667 1.13081 0.97067 0.94314 0.89421 0.70815 0.77138 1.18294 0.92328 0.90719 0.95558 1.35629 1.29057 1.14358 1.20791 1.00853 0.72816 0.72490 0.72844 1.93620 1.60476 1.72845 1.67753 1.93571 1.81587 1.47053 1.75497 1.55226 1.37452 1.70210 1.23451 1.21565 0.86768 0.96069 0.96591 1.22509 0.94271 0.96054 0.98572 0.84861 1.23456 0.99268 0.95699 0.98765 1.23398 0.99253 0.74939 1.00733 0.85130 1.50780 1.10355 1.13855 1.40763 1.26578 0.99418 0.85619 0.92687 1.70588 1.08002 1.24434 1.27881 1.26517 0.94887 0.95676 0.94410 1.77979 1.06179 1.07589 1.26190 1.23688 0.93052 0.96600 1.04672 1.84350 1.55022 1.06466 1.05986 1.26573 1.01883 0.96058 1.04078 1.20491 1.04092 1.02856 0.93358 0.75526 0.88601 1.20974 1.21438 0.72910 0.89296 0.90272 0.88741 0.89218 0.73722 0.74872 0.88105 0.88058 0.77424 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.57 11.10 -128.49 -1.43 -4.00 16 2 C -0.10 0.06 1.78 71.23 0.13 0.18 16 3 Si 0.78 -3.37 30.42 68.60 2.09 -1.28 16 4 C 0.05 0.03 5.17 -20.92 -0.11 -0.08 16 5 C -0.80 -1.20 6.54 66.72 0.44 -0.77 16 6 S 2.72 6.91 5.66 -56.49 -0.32 6.59 16 7 O -0.96 -7.08 14.29 -119.53 -1.71 -8.79 16 8 O -0.99 -8.96 17.38 -128.00 -2.22 -11.18 16 9 N -1.10 8.20 6.00 -187.49 -1.12 7.07 16 10 C 0.12 -1.15 6.06 86.38 0.52 -0.63 16 11 C -0.09 1.22 3.79 -10.27 -0.04 1.18 16 12 H 0.13 -2.25 8.12 -2.39 -0.02 -2.27 16 13 C -0.13 1.31 7.44 31.11 0.23 1.55 16 14 C 0.12 -0.80 5.07 45.51 0.23 -0.57 16 15 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 16 N -0.37 -0.31 3.83 -328.95 -1.26 -1.57 16 17 C 0.25 0.25 11.87 180.36 2.14 2.39 16 18 N -0.58 -4.10 11.19 -203.99 -2.28 -6.38 16 19 C 0.19 1.08 13.03 180.76 2.36 3.44 16 20 N -0.35 -2.36 12.70 -61.24 -0.78 -3.14 16 21 C -0.14 1.54 7.00 31.12 0.22 1.76 16 22 S 0.22 -0.29 23.21 -56.49 -1.31 -1.60 16 23 C -0.15 0.73 11.23 66.72 0.75 1.48 16 24 C -0.18 0.48 8.74 21.22 0.19 0.67 16 25 H 0.39 -0.88 8.74 -74.06 -0.65 -1.52 16 26 H 0.10 -0.45 7.16 -2.39 -0.02 -0.46 16 27 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 28 H -0.29 -0.44 6.86 99.48 0.68 0.24 16 29 H 0.43 -5.31 8.64 -96.74 -0.84 -6.15 16 30 H 0.09 -1.10 8.14 -2.38 -0.02 -1.12 16 31 H 0.08 -0.65 7.45 -2.39 -0.02 -0.67 16 32 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.09 -0.74 8.10 -2.39 -0.02 -0.76 16 34 H 0.25 -1.77 6.75 -2.91 -0.02 -1.79 16 35 H 0.24 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.10 -1.11 6.15 -2.39 -0.01 -1.12 16 37 H 0.10 -1.25 8.14 -2.39 -0.02 -1.26 16 38 H 0.21 -2.40 8.06 -2.91 -0.02 -2.43 16 39 H 0.17 -1.00 5.57 -2.91 -0.02 -1.01 16 Total: 0.00 -31.86 352.84 -3.64 -35.50 By element: Atomic # 1 Polarization: -21.47 SS G_CDS: -0.34 Total: -21.81 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 7.05 Total: 10.59 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: -5.44 Total: -4.02 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -5.36 Total: -23.97 kcal Atomic # 14 Polarization: -3.37 SS G_CDS: 2.09 Total: -1.28 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -1.63 Total: 4.99 kcal Total: -31.86 -3.64 -35.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567542_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.890 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds