Wall clock time and date at job start Mon Mar 8 2021 10:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47285 * 2 1 4 4 C 1.50702 * 109.47241 * 239.99575 * 2 1 3 5 5 C 1.33383 * 125.20407 * 300.00289 * 4 2 1 6 6 C 1.38429 * 114.92016 * 179.97438 * 5 4 2 7 7 S 1.76205 * 122.53775 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40078 * 336.46206 * 7 6 5 9 9 O 1.42101 * 106.39847 * 203.54268 * 7 6 5 10 10 N 1.65598 * 107.21764 * 90.00509 * 7 6 5 11 11 C 1.46502 * 120.00323 * 64.99622 * 10 7 6 12 12 C 1.52994 * 109.47057 * 165.00054 * 11 10 7 13 13 H 1.09002 * 112.90771 * 316.25090 * 12 11 10 14 14 C 1.53779 * 113.61529 * 87.50494 * 12 11 10 15 15 C 1.53779 * 87.08402 * 139.98073 * 14 12 11 16 16 H 1.08998 * 113.69354 * 89.12517 * 15 14 12 17 17 N 1.46501 * 113.61719 * 220.02087 * 15 14 12 18 18 C 1.34433 * 126.81790 * 12.20357 * 17 15 14 19 19 N 1.30839 * 108.07354 * 179.89479 * 18 17 15 20 20 C 1.33244 * 109.82821 * 0.37832 * 19 18 17 21 21 N 1.30709 * 108.94477 * 359.76742 * 20 19 18 22 22 C 1.53784 * 113.61233 * 185.00081 * 12 11 10 23 23 C 1.33385 * 114.92170 * 0.24937 * 6 5 4 24 24 S 1.75883 * 125.20204 * 119.95862 * 4 2 1 25 25 H 0.96703 * 113.99407 * 60.00308 * 1 2 3 26 26 H 1.09001 * 109.47104 * 119.99944 * 2 1 3 27 27 H 1.48502 * 109.99936 * 59.99767 * 3 2 1 28 28 H 1.48503 * 110.00038 * 181.32024 * 3 2 1 29 29 H 1.07998 * 122.54480 * 359.94638 * 5 4 2 30 30 H 0.97003 * 119.99713 * 245.00120 * 10 7 6 31 31 H 1.08994 * 109.46583 * 44.99948 * 11 10 7 32 32 H 1.09001 * 109.46856 * 285.00405 * 11 10 7 33 33 H 1.09006 * 113.61307 * 25.43275 * 14 12 11 34 34 H 1.09007 * 113.61642 * 254.53032 * 14 12 11 35 35 H 1.07994 * 125.96495 * 0.03860 * 18 17 15 36 36 H 1.07991 * 125.52420 * 179.72453 * 20 19 18 37 37 H 1.09004 * 113.61451 * 105.47254 * 22 12 11 38 38 H 1.08994 * 113.61477 * 334.56556 * 22 12 11 39 39 H 1.07997 * 125.20306 * 179.75202 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6739 -1.9812 -1.5436 6 6 2.2440 -2.4173 -2.7273 7 16 2.0344 -4.0591 -3.3317 8 8 1.7260 -4.8658 -2.2033 9 8 3.1368 -4.3139 -4.1914 10 7 0.6840 -4.0599 -4.2903 11 6 0.6670 -3.2834 -5.5324 12 6 -0.5091 -3.7354 -6.4003 13 1 -0.6175 -4.8194 -6.4367 14 6 -1.8216 -2.9950 -6.0934 15 6 -2.0719 -2.9724 -7.6105 16 1 -2.6076 -3.8471 -7.9791 17 7 -2.6413 -1.7116 -8.0926 18 6 -2.7367 -0.5575 -7.4099 19 7 -3.3013 0.3294 -8.1887 20 6 -3.5867 -0.2212 -9.3680 21 7 -3.2015 -1.4702 -9.3576 22 6 -0.5467 -3.0656 -7.7841 23 6 2.9687 -1.5022 -3.3726 24 16 2.9460 0.0094 -2.4737 25 1 -0.3932 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5347 1.7702 -0.0322 29 1 1.0670 -2.6216 -0.9207 30 1 -0.0957 -4.5745 -4.0292 31 1 1.5998 -3.4425 -6.0731 32 1 0.5593 -2.2244 -5.2974 33 1 -1.6738 -2.0056 -5.6604 34 1 -2.5433 -3.5965 -5.5407 35 1 -2.4033 -0.3907 -6.3963 36 1 -4.0602 0.2827 -10.1976 37 1 -0.2392 -3.7242 -8.5965 38 1 -0.0505 -2.0957 -7.8134 39 1 3.4880 -1.6640 -4.3056 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567542_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:38 Heat of formation + Delta-G solvation = 59.947561 kcal Electronic energy + Delta-G solvation = -26923.897272 eV Core-core repulsion = 22897.432890 eV Total energy + Delta-G solvation = -4026.464382 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.14912 -40.63259 -39.60134 -38.32529 -37.65533 -36.94197 -36.27004 -33.40243 -32.13907 -31.93803 -28.69738 -27.33563 -27.28705 -25.13398 -25.01963 -22.99591 -22.53312 -21.54419 -20.86950 -20.20205 -19.28206 -18.91853 -18.31180 -17.98971 -17.72003 -17.44080 -17.06873 -16.44351 -16.29408 -16.14433 -15.75406 -15.59122 -15.40400 -15.11781 -14.97854 -14.36781 -14.25908 -14.22277 -14.01774 -13.92363 -13.74243 -13.39019 -13.24168 -13.12403 -12.97155 -12.83690 -12.59268 -12.54150 -12.30205 -12.06694 -11.88867 -11.72725 -10.98061 -10.85739 -10.78405 -10.78193 -10.63981 -10.29417 -9.97524 -5.32772 -0.85920 -0.59001 0.19922 0.47077 0.61487 0.90943 1.04373 1.23007 1.42732 1.75709 1.90728 2.01013 2.61703 2.81180 2.95389 3.11413 3.21051 3.23476 3.28589 3.33978 3.51621 3.65114 3.70602 3.82496 3.94248 4.00181 4.08921 4.15991 4.20955 4.26806 4.34784 4.36261 4.44705 4.52789 4.60926 4.64881 4.79928 4.90304 4.96535 5.29311 5.44503 5.69775 5.77348 6.30404 7.10532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.027 4.027 3 Si 0.655 3.345 4 C -0.229 4.229 5 C -0.043 4.043 6 C -0.686 4.686 7 S 2.710 3.290 8 O -0.950 6.950 9 O -0.952 6.952 10 N -1.114 6.114 11 C 0.127 3.873 12 C -0.112 4.112 13 H 0.113 0.887 14 C -0.142 4.142 15 C 0.132 3.868 16 H 0.128 0.872 17 N -0.370 5.370 18 C 0.252 3.748 19 N -0.545 5.545 20 C 0.199 3.801 21 N -0.319 5.319 22 C -0.137 4.137 23 C -0.088 4.088 24 S 0.161 5.839 25 H 0.380 0.620 26 H 0.127 0.873 27 H -0.230 1.230 28 H -0.237 1.237 29 H 0.157 0.843 30 H 0.422 0.578 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.216 0.784 36 H 0.218 0.782 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 2.507 -1.470 3.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.141 4.141 3 Si 0.554 3.446 4 C -0.346 4.346 5 C -0.071 4.071 6 C -0.786 4.786 7 S 2.796 3.204 8 O -0.940 6.940 9 O -0.942 6.942 10 N -0.875 5.875 11 C 0.000 4.000 12 C -0.132 4.132 13 H 0.131 0.869 14 C -0.180 4.180 15 C 0.029 3.971 16 H 0.146 0.854 17 N -0.160 5.160 18 C -0.045 4.045 19 N -0.272 5.272 20 C -0.104 4.104 21 N -0.146 5.146 22 C -0.177 4.177 23 C -0.227 4.227 24 S 0.425 5.575 25 H 0.228 0.772 26 H 0.144 0.856 27 H -0.153 1.153 28 H -0.161 1.161 29 H 0.175 0.825 30 H 0.257 0.743 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.790 3.465 -1.064 3.710 hybrid contribution -0.924 -1.463 0.685 1.861 sum -0.134 2.002 -0.380 2.042 Atomic orbital electron populations 1.86555 1.16424 1.81598 1.49118 1.24461 0.85314 1.09193 0.95086 0.95150 0.82182 0.77278 0.89993 1.25084 1.07663 0.98985 1.02897 1.19601 0.98444 0.94722 0.94350 1.30040 1.14189 1.26454 1.07932 1.01599 0.72899 0.72932 0.72950 1.93624 1.83973 1.65543 1.50851 1.93615 1.50774 1.83200 1.66568 1.55514 1.34789 1.62784 1.34408 1.21325 0.99935 0.94819 0.83889 1.22583 0.93963 1.01441 0.95225 0.86873 1.23609 0.98128 1.02564 0.93729 1.23028 0.94324 0.84490 0.95270 0.85439 1.50579 1.44536 1.10839 1.10073 1.25954 0.96663 0.82082 0.99796 1.70599 1.20496 1.32457 1.03609 1.26085 0.98600 0.89225 0.96513 1.78091 1.18318 1.18714 0.99458 1.23493 0.94115 1.02551 0.97507 1.25940 0.98077 0.95927 1.02772 1.84436 1.46679 1.12344 1.14058 0.77205 0.85615 1.15337 1.16131 0.82518 0.74284 0.89360 0.91187 0.88416 0.88974 0.76810 0.76604 0.89213 0.88679 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.79 12.86 -35.23 -0.45 0.33 16 2 C -0.03 0.04 2.96 36.01 0.11 0.15 16 3 Si 0.65 -1.41 30.97 -169.99 -5.26 -6.68 16 4 C -0.23 0.30 5.72 -36.00 -0.21 0.09 16 5 C -0.04 0.02 9.56 -41.21 -0.39 -0.37 16 6 C -0.69 0.78 5.86 -41.21 -0.24 0.54 16 7 S 2.71 -1.21 5.80 -107.50 -0.62 -1.84 16 8 O -0.95 -2.90 17.63 -57.17 -1.01 -3.91 16 9 O -0.95 -2.24 17.11 -57.17 -0.98 -3.22 16 10 N -1.11 4.65 6.00 -10.62 -0.06 4.59 16 11 C 0.13 -0.69 6.06 -4.04 -0.02 -0.71 16 12 C -0.11 0.68 3.78 -89.81 -0.34 0.34 16 13 H 0.11 -0.74 8.14 -51.93 -0.42 -1.16 16 14 C -0.14 0.89 6.99 -25.92 -0.18 0.71 16 15 C 0.13 -0.50 5.07 -67.12 -0.34 -0.84 16 16 H 0.13 -0.48 8.14 -51.93 -0.42 -0.90 16 17 N -0.37 0.21 3.83 -55.32 -0.21 0.00 16 18 C 0.25 -0.25 11.87 -90.64 -1.08 -1.32 16 19 N -0.54 -1.09 11.19 -15.83 -0.18 -1.26 16 20 C 0.20 0.32 13.03 -91.81 -1.20 -0.88 16 21 N -0.32 -0.74 12.70 29.29 0.37 -0.37 16 22 C -0.14 0.66 7.44 -25.91 -0.19 0.47 16 23 C -0.09 0.19 10.70 29.04 0.31 0.51 16 24 S 0.16 -0.38 20.58 -107.50 -2.21 -2.59 16 25 H 0.38 -2.11 8.70 45.56 0.40 -1.72 16 26 H 0.13 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 28 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 29 H 0.16 -0.08 7.96 -52.49 -0.42 -0.50 16 30 H 0.42 -2.40 8.65 -34.47 -0.30 -2.70 16 31 H 0.09 -0.44 7.75 -51.93 -0.40 -0.84 16 32 H 0.07 -0.49 7.84 -51.93 -0.41 -0.89 16 33 H 0.10 -0.71 6.14 -51.93 -0.32 -1.03 16 34 H 0.09 -0.62 8.14 -51.93 -0.42 -1.04 16 35 H 0.22 -1.14 6.75 -52.49 -0.35 -1.49 16 36 H 0.22 -0.32 8.06 -52.49 -0.42 -0.74 16 37 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.09 -0.44 8.10 -51.93 -0.42 -0.86 16 39 H 0.19 -0.78 8.00 -52.49 -0.42 -1.20 16 LS Contribution 360.40 15.07 5.43 5.43 Total: 0.00 -13.33 360.40 -13.33 -26.66 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -4.37 Total: -15.82 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.78 Total: -1.32 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -0.08 Total: 2.95 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -2.44 Total: -6.79 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.26 Total: -6.68 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.84 Total: -4.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -13.33 -13.33 -26.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567542_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.606 kcal (2) G-P(sol) polarization free energy of solvation -13.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds