Wall clock time and date at job start Mon Mar 8 2021 10:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47285 * 2 1 4 4 C 1.50702 * 109.47241 * 239.99575 * 2 1 3 5 5 C 1.33383 * 125.20407 * 300.00289 * 4 2 1 6 6 C 1.38429 * 114.92016 * 179.97438 * 5 4 2 7 7 S 1.76205 * 122.53775 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40078 * 336.46206 * 7 6 5 9 9 O 1.42101 * 106.39847 * 203.54268 * 7 6 5 10 10 N 1.65598 * 107.21764 * 90.00509 * 7 6 5 11 11 C 1.46502 * 120.00323 * 64.99622 * 10 7 6 12 12 C 1.52994 * 109.47057 * 165.00054 * 11 10 7 13 13 H 1.09002 * 112.90771 * 316.25090 * 12 11 10 14 14 C 1.53779 * 113.61529 * 87.50494 * 12 11 10 15 15 C 1.53779 * 87.08402 * 139.98073 * 14 12 11 16 16 H 1.08998 * 113.69354 * 89.12517 * 15 14 12 17 17 N 1.46501 * 113.61719 * 220.02087 * 15 14 12 18 18 C 1.34433 * 126.81790 * 12.20357 * 17 15 14 19 19 N 1.30839 * 108.07354 * 179.89479 * 18 17 15 20 20 C 1.33244 * 109.82821 * 0.37832 * 19 18 17 21 21 N 1.30709 * 108.94477 * 359.76742 * 20 19 18 22 22 C 1.53784 * 113.61233 * 185.00081 * 12 11 10 23 23 C 1.33385 * 114.92170 * 0.24937 * 6 5 4 24 24 S 1.75883 * 125.20204 * 119.95862 * 4 2 1 25 25 H 0.96703 * 113.99407 * 60.00308 * 1 2 3 26 26 H 1.09001 * 109.47104 * 119.99944 * 2 1 3 27 27 H 1.48502 * 109.99936 * 59.99767 * 3 2 1 28 28 H 1.48503 * 110.00038 * 181.32024 * 3 2 1 29 29 H 1.07998 * 122.54480 * 359.94638 * 5 4 2 30 30 H 0.97003 * 119.99713 * 245.00120 * 10 7 6 31 31 H 1.08994 * 109.46583 * 44.99948 * 11 10 7 32 32 H 1.09001 * 109.46856 * 285.00405 * 11 10 7 33 33 H 1.09006 * 113.61307 * 25.43275 * 14 12 11 34 34 H 1.09007 * 113.61642 * 254.53032 * 14 12 11 35 35 H 1.07994 * 125.96495 * 0.03860 * 18 17 15 36 36 H 1.07991 * 125.52420 * 179.72453 * 20 19 18 37 37 H 1.09004 * 113.61451 * 105.47254 * 22 12 11 38 38 H 1.08994 * 113.61477 * 334.56556 * 22 12 11 39 39 H 1.07997 * 125.20306 * 179.75202 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6739 -1.9812 -1.5436 6 6 2.2440 -2.4173 -2.7273 7 16 2.0344 -4.0591 -3.3317 8 8 1.7260 -4.8658 -2.2033 9 8 3.1368 -4.3139 -4.1914 10 7 0.6840 -4.0599 -4.2903 11 6 0.6670 -3.2834 -5.5324 12 6 -0.5091 -3.7354 -6.4003 13 1 -0.6175 -4.8194 -6.4367 14 6 -1.8216 -2.9950 -6.0934 15 6 -2.0719 -2.9724 -7.6105 16 1 -2.6076 -3.8471 -7.9791 17 7 -2.6413 -1.7116 -8.0926 18 6 -2.7367 -0.5575 -7.4099 19 7 -3.3013 0.3294 -8.1887 20 6 -3.5867 -0.2212 -9.3680 21 7 -3.2015 -1.4702 -9.3576 22 6 -0.5467 -3.0656 -7.7841 23 6 2.9687 -1.5022 -3.3726 24 16 2.9460 0.0094 -2.4737 25 1 -0.3932 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5347 1.7702 -0.0322 29 1 1.0670 -2.6216 -0.9207 30 1 -0.0957 -4.5745 -4.0292 31 1 1.5998 -3.4425 -6.0731 32 1 0.5593 -2.2244 -5.2974 33 1 -1.6738 -2.0056 -5.6604 34 1 -2.5433 -3.5965 -5.5407 35 1 -2.4033 -0.3907 -6.3963 36 1 -4.0602 0.2827 -10.1976 37 1 -0.2392 -3.7242 -8.5965 38 1 -0.0505 -2.0957 -7.8134 39 1 3.4880 -1.6640 -4.3056 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567542_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:38 Heat of formation + Delta-G solvation = 55.077830 kcal Electronic energy + Delta-G solvation = -26924.108439 eV Core-core repulsion = 22897.432890 eV Total energy + Delta-G solvation = -4026.675549 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.06325 -40.27294 -39.46265 -38.38784 -37.50546 -37.01267 -35.98429 -33.26943 -32.10774 -31.79404 -28.38432 -27.19283 -26.84791 -24.91309 -24.88734 -22.89875 -22.33036 -21.42315 -20.55613 -20.02721 -19.12200 -18.73865 -18.18272 -17.85294 -17.60644 -17.14710 -16.86744 -16.31046 -16.19338 -15.92999 -15.61361 -15.45570 -15.19196 -14.95529 -14.79825 -14.25748 -14.09808 -13.94913 -13.90924 -13.53879 -13.49428 -13.33282 -13.26036 -13.16592 -12.90116 -12.68307 -12.55263 -12.22808 -12.12174 -11.70374 -11.57623 -11.52323 -10.97712 -10.79630 -10.67624 -10.50076 -10.47811 -10.14338 -9.80967 -5.18395 -0.76045 -0.44987 0.36223 0.61643 0.69993 1.01452 1.18575 1.42851 1.54632 1.86535 2.02026 2.08631 2.70367 3.17753 3.24160 3.37724 3.45100 3.50558 3.61582 3.65428 3.73973 3.92080 3.93389 4.13192 4.22060 4.25013 4.35862 4.39907 4.53646 4.66140 4.67762 4.73704 4.81049 4.89103 4.93574 5.00811 5.03555 5.07547 5.26553 5.46793 5.48558 5.96473 6.09034 6.68848 7.14909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.031 4.031 3 Si 0.732 3.268 4 C -0.235 4.235 5 C -0.055 4.055 6 C -0.691 4.691 7 S 2.726 3.274 8 O -0.991 6.991 9 O -0.983 6.983 10 N -1.101 6.101 11 C 0.118 3.882 12 C -0.100 4.100 13 H 0.118 0.882 14 C -0.130 4.130 15 C 0.117 3.883 16 H 0.122 0.878 17 N -0.368 5.368 18 C 0.257 3.743 19 N -0.581 5.581 20 C 0.188 3.812 21 N -0.358 5.358 22 C -0.135 4.135 23 C -0.086 4.086 24 S 0.187 5.813 25 H 0.398 0.602 26 H 0.118 0.882 27 H -0.272 1.272 28 H -0.265 1.265 29 H 0.150 0.850 30 H 0.431 0.569 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 3.112 -1.440 3.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.144 4.144 3 Si 0.635 3.365 4 C -0.353 4.353 5 C -0.083 4.083 6 C -0.792 4.792 7 S 2.815 3.185 8 O -0.981 6.981 9 O -0.973 6.973 10 N -0.865 5.865 11 C -0.007 4.007 12 C -0.121 4.121 13 H 0.136 0.864 14 C -0.169 4.169 15 C 0.015 3.985 16 H 0.140 0.860 17 N -0.159 5.159 18 C -0.039 4.039 19 N -0.309 5.309 20 C -0.115 4.115 21 N -0.185 5.185 22 C -0.174 4.174 23 C -0.226 4.226 24 S 0.451 5.549 25 H 0.248 0.752 26 H 0.135 0.865 27 H -0.198 1.198 28 H -0.191 1.191 29 H 0.168 0.832 30 H 0.268 0.732 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.271 0.729 36 H 0.248 0.752 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.839 4.024 -1.054 4.244 hybrid contribution -0.933 -1.623 0.689 1.995 sum -0.094 2.401 -0.365 2.431 Atomic orbital electron populations 1.86517 1.16343 1.82071 1.50471 1.24527 0.85549 1.09502 0.94816 0.94286 0.79266 0.75069 0.87850 1.25151 1.07858 0.98990 1.03289 1.19628 0.98968 0.95034 0.94704 1.29808 1.15219 1.25993 1.08166 1.00741 0.72870 0.72748 0.72155 1.93567 1.84628 1.67266 1.52643 1.93573 1.52627 1.83977 1.67133 1.55173 1.33983 1.63101 1.34213 1.21559 1.00085 0.95918 0.83161 1.22485 0.93818 1.01710 0.94095 0.86414 1.23651 0.97832 1.03613 0.91763 1.23359 0.94629 0.83275 0.97201 0.85967 1.50758 1.44028 1.11875 1.09202 1.26690 0.95127 0.81327 1.00744 1.70585 1.22087 1.33948 1.04234 1.26473 0.98609 0.89259 0.97154 1.78001 1.19669 1.19303 1.01552 1.23475 0.93259 1.02623 0.98076 1.26253 0.97281 0.95713 1.03307 1.84362 1.45745 1.11690 1.13074 0.75156 0.86495 1.19759 1.19092 0.83232 0.73189 0.89685 0.88899 0.86691 0.88048 0.72881 0.75154 0.89903 0.88564 0.77762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.91 12.86 -148.98 -1.92 0.00 16 2 C -0.03 0.10 2.96 71.24 0.21 0.32 16 3 Si 0.73 -3.31 30.97 68.60 2.12 -1.18 16 4 C -0.24 0.75 5.72 24.59 0.14 0.89 16 5 C -0.05 0.07 9.56 21.22 0.20 0.28 16 6 C -0.69 1.95 5.86 21.22 0.12 2.08 16 7 S 2.73 -2.22 5.80 -56.49 -0.33 -2.55 16 8 O -0.99 -6.97 17.63 -128.00 -2.26 -9.22 16 9 O -0.98 -4.79 17.11 -128.00 -2.19 -6.98 16 10 N -1.10 10.22 6.00 -187.50 -1.12 9.09 16 11 C 0.12 -1.48 6.06 86.38 0.52 -0.96 16 12 C -0.10 1.38 3.78 -10.27 -0.04 1.34 16 13 H 0.12 -1.69 8.14 -2.39 -0.02 -1.71 16 14 C -0.13 1.90 6.99 31.12 0.22 2.12 16 15 C 0.12 -0.96 5.07 45.52 0.23 -0.73 16 16 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 17 N -0.37 0.55 3.83 -328.92 -1.26 -0.71 16 18 C 0.26 -0.77 11.87 180.36 2.14 1.37 16 19 N -0.58 -2.31 11.19 -204.01 -2.28 -4.59 16 20 C 0.19 0.75 13.03 180.77 2.36 3.11 16 21 N -0.36 -1.95 12.70 -61.25 -0.78 -2.72 16 22 C -0.13 1.40 7.44 31.12 0.23 1.64 16 23 C -0.09 0.50 10.70 66.72 0.71 1.21 16 24 S 0.19 -1.14 20.58 -56.49 -1.16 -2.31 16 25 H 0.40 -4.91 8.70 -74.06 -0.64 -5.55 16 26 H 0.12 -0.22 7.96 -2.39 -0.02 -0.23 16 27 H -0.27 -0.61 7.11 99.48 0.71 0.09 16 28 H -0.27 0.00 7.11 99.48 0.71 0.71 16 29 H 0.15 -0.05 7.96 -2.91 -0.02 -0.07 16 30 H 0.43 -5.33 8.65 -96.74 -0.84 -6.17 16 31 H 0.08 -0.95 7.75 -2.39 -0.02 -0.97 16 32 H 0.09 -1.55 7.84 -2.39 -0.02 -1.57 16 33 H 0.11 -2.06 6.14 -2.38 -0.01 -2.07 16 34 H 0.10 -1.59 8.14 -2.38 -0.02 -1.61 16 35 H 0.26 -3.38 6.75 -2.91 -0.02 -3.40 16 36 H 0.23 -0.41 8.06 -2.92 -0.02 -0.43 16 37 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.10 -0.99 8.10 -2.39 -0.02 -1.01 16 39 H 0.21 -2.10 8.00 -2.91 -0.02 -2.12 16 Total: 0.00 -31.87 360.40 -4.44 -36.32 By element: Atomic # 1 Polarization: -27.46 SS G_CDS: -0.33 Total: -27.79 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 7.05 Total: 12.65 kcal Atomic # 7 Polarization: 6.51 SS G_CDS: -5.44 Total: 1.07 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -6.36 Total: -16.21 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.12 Total: -1.18 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.49 Total: -4.86 kcal Total: -31.87 -4.44 -36.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567542_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.395 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds