Wall clock time and date at job start Mon Mar 8 2021 10:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33395 * 125.20548 * 2 1 4 4 C 1.50699 * 122.53559 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47187 * 59.41069 * 4 3 2 6 6 Si 1.86292 * 109.47326 * 299.40521 * 4 3 2 7 7 C 1.38424 * 114.92258 * 180.02562 * 3 2 1 8 8 S 1.76191 * 122.54000 * 179.97438 * 7 3 2 9 9 O 1.42099 * 106.40522 * 34.03290 * 8 7 3 10 10 O 1.42097 * 106.40377 * 166.95634 * 8 7 3 11 11 N 1.65606 * 107.21782 * 280.49200 * 8 7 3 12 12 C 1.46502 * 119.99924 * 64.99982 * 11 8 7 13 13 C 1.53001 * 109.47074 * 165.00320 * 12 11 8 14 14 H 1.08997 * 112.84557 * 316.19386 * 13 12 11 15 15 C 1.53779 * 113.61398 * 87.50185 * 13 12 11 16 16 C 1.53786 * 87.08017 * 139.98043 * 15 13 12 17 17 H 1.09004 * 113.68736 * 89.12418 * 16 15 13 18 18 N 1.46494 * 113.61522 * 220.02046 * 16 15 13 19 19 C 1.34428 * 126.82502 * 12.19987 * 18 16 15 20 20 N 1.30834 * 108.07978 * 179.89709 * 19 18 16 21 21 C 1.33241 * 109.82504 * 0.38231 * 20 19 18 22 22 N 1.30713 * 108.94833 * 359.76554 * 21 20 19 23 23 C 1.53781 * 113.61262 * 185.00178 * 13 12 11 24 24 C 1.33393 * 114.91633 * 359.97438 * 7 3 2 25 25 C 1.50702 * 125.19750 * 179.97438 * 24 7 3 26 26 S 1.75880 * 109.59847 * 0.02562 * 24 7 3 27 27 H 1.08996 * 109.47479 * 181.74130 * 1 2 3 28 28 H 1.09003 * 109.46639 * 301.74073 * 1 2 3 29 29 H 1.09004 * 109.47169 * 61.73480 * 1 2 3 30 30 H 1.09005 * 109.46612 * 179.40309 * 4 3 2 31 31 H 0.96698 * 114.00376 * 68.13848 * 5 4 3 32 32 H 1.48494 * 110.00357 * 310.68535 * 6 4 3 33 33 H 1.48497 * 110.00071 * 72.00894 * 6 4 3 34 34 H 0.97001 * 120.00183 * 245.00481 * 11 8 7 35 35 H 1.09000 * 109.46653 * 285.00257 * 12 11 8 36 36 H 1.09001 * 109.46841 * 45.00271 * 12 11 8 37 37 H 1.09001 * 113.61187 * 254.52692 * 15 13 12 38 38 H 1.08999 * 113.61581 * 25.43135 * 15 13 12 39 39 H 1.08006 * 125.95834 * 0.04723 * 19 18 16 40 40 H 1.08001 * 125.52329 * 179.79818 * 21 20 19 41 41 H 1.08998 * 113.61355 * 334.56709 * 23 13 12 42 42 H 1.09004 * 113.61634 * 105.46971 * 23 13 12 43 43 H 1.09004 * 109.46837 * 180.02562 * 25 24 7 44 44 H 1.09003 * 109.47024 * 300.00950 * 25 24 7 45 45 H 1.09000 * 109.47675 * 60.01586 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.8898 2.6661 1.1588 6 14 0.6724 2.7324 -1.5311 7 6 3.6380 0.8429 -0.0006 8 16 4.8357 2.1351 -0.0013 9 8 4.2803 3.1975 0.7616 10 8 6.0826 1.5269 0.3059 11 7 4.9569 2.6902 -1.5569 12 6 3.8119 3.3483 -2.1911 13 6 4.2792 4.0853 -3.4479 14 1 5.2059 4.6382 -3.2943 15 6 4.2854 3.2074 -4.7104 16 6 3.7432 4.4308 -5.4683 17 1 4.5229 5.0785 -5.8692 18 7 2.7143 4.0999 -6.4572 19 6 2.0692 2.9277 -6.5874 20 7 1.2285 3.0354 -7.5840 21 6 1.3137 4.2534 -8.1175 22 7 2.2104 4.9422 -7.4617 23 6 3.1730 4.9126 -4.1238 24 6 3.9750 -0.4478 -0.0005 25 6 5.3860 -0.9772 -0.0016 26 16 2.5209 -1.4372 -0.0004 27 1 -0.3634 -1.0271 0.0312 28 1 -0.3633 0.5407 0.8740 29 1 -0.3634 0.4867 -0.9052 30 1 2.5187 3.2101 0.0102 31 1 1.3842 2.6754 1.9899 32 1 1.4313 2.2988 -2.7316 33 1 -0.5907 1.9593 -1.4221 34 1 5.7860 2.5796 -2.0481 35 1 3.0682 2.5997 -2.4643 36 1 3.3710 4.0613 -1.4945 37 1 5.2836 2.9048 -5.0269 38 1 3.5835 2.3746 -4.6666 39 1 2.2173 2.0508 -5.9745 40 1 0.7353 4.6133 -8.9556 41 1 2.1671 4.5460 -3.9196 42 1 3.2732 5.9866 -3.9668 43 1 5.3652 -2.0670 -0.0017 44 1 5.9060 -0.6238 -0.8920 45 1 5.9075 -0.6237 0.8880 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567542_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:43 Heat of formation + Delta-G solvation = 66.963718 kcal Electronic energy + Delta-G solvation = -32811.386640 eV Core-core repulsion = 28474.151264 eV Total energy + Delta-G solvation = -4337.235377 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.096 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.14165 -40.70474 -40.32167 -38.61221 -37.06940 -37.04261 -36.35074 -34.34494 -33.40454 -32.12648 -31.00005 -28.85734 -28.05627 -27.28550 -26.06109 -25.14015 -23.30866 -23.00358 -22.56036 -21.11533 -20.64709 -20.06108 -19.30748 -18.67764 -18.42956 -18.15256 -17.58886 -17.33081 -16.99572 -16.53689 -16.27631 -16.11939 -15.81349 -15.51241 -15.41289 -15.26756 -15.07633 -14.92213 -14.58396 -14.35568 -14.31733 -13.97411 -13.90829 -13.74624 -13.57224 -13.43194 -13.37478 -13.24239 -13.13750 -12.86117 -12.80859 -12.66977 -12.45060 -12.17931 -11.90801 -11.81470 -11.64008 -11.33080 -11.02661 -10.96935 -10.76910 -10.72420 -10.62357 -10.11073 -9.59964 -5.04972 -0.88900 -0.52876 0.27367 0.59075 0.62147 0.73673 1.16728 1.23842 1.36872 1.82638 1.84454 2.02129 2.52906 2.80562 2.94452 3.07800 3.21195 3.28024 3.32521 3.36407 3.60073 3.63307 3.73864 3.81317 3.90486 3.93710 3.98267 4.05843 4.10146 4.14444 4.22188 4.28745 4.34500 4.38820 4.40875 4.45464 4.48846 4.55063 4.59941 4.64264 4.82834 4.90285 4.93468 4.97050 5.12556 5.30429 5.45890 5.64784 5.77592 6.52608 7.11585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.167 4.167 3 C -0.083 4.083 4 C -0.091 4.091 5 O -0.528 6.528 6 Si 0.718 3.282 7 C -0.688 4.688 8 S 2.706 3.294 9 O -0.946 6.946 10 O -0.949 6.949 11 N -1.113 6.113 12 C 0.104 3.896 13 C -0.110 4.110 14 H 0.117 0.883 15 C -0.145 4.145 16 C 0.133 3.867 17 H 0.130 0.870 18 N -0.369 5.369 19 C 0.251 3.749 20 N -0.544 5.544 21 C 0.199 3.801 22 N -0.317 5.317 23 C -0.140 4.140 24 C -0.049 4.049 25 C -0.110 4.110 26 S 0.159 5.841 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.372 0.628 32 H -0.239 1.239 33 H -0.232 1.232 34 H 0.422 0.578 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.213 0.787 40 H 0.218 0.782 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -0.455 -0.863 1.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.285 4.285 3 C -0.094 4.094 4 C -0.201 4.201 5 O -0.333 6.333 6 Si 0.618 3.382 7 C -0.787 4.787 8 S 2.794 3.206 9 O -0.936 6.936 10 O -0.940 6.940 11 N -0.874 5.874 12 C -0.021 4.021 13 C -0.131 4.131 14 H 0.135 0.865 15 C -0.183 4.183 16 C 0.030 3.970 17 H 0.148 0.852 18 N -0.160 5.160 19 C -0.046 4.046 20 N -0.271 5.271 21 C -0.104 4.104 22 N -0.143 5.143 23 C -0.180 4.180 24 C -0.170 4.170 25 C -0.168 4.168 26 S 0.426 5.574 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.220 0.780 32 H -0.165 1.165 33 H -0.157 1.157 34 H 0.258 0.742 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.229 0.771 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.545 -1.582 -1.396 2.180 hybrid contribution 1.190 -0.374 0.761 1.461 sum 1.735 -1.956 -0.636 2.691 Atomic orbital electron populations 1.20849 0.87015 1.03365 1.04809 1.24489 1.00480 0.94926 1.08561 1.18595 0.90164 0.97140 1.03476 1.25703 1.02669 0.91933 0.99841 1.86624 1.35768 1.95154 1.15734 0.94433 0.80165 0.90763 0.72859 1.29510 1.11791 1.13455 1.23982 1.01620 0.73065 0.73418 0.72529 1.93551 1.79318 1.53101 1.67607 1.93611 1.40616 1.77545 1.82193 1.55499 1.22434 1.74213 1.35236 1.21921 0.87954 0.96863 0.95391 1.22575 1.00781 0.97426 0.92299 0.86541 1.23621 1.03324 0.96597 0.94771 1.23013 0.89249 0.99503 0.85218 0.85217 1.50573 1.30727 1.09876 1.24798 1.25914 0.90623 0.91690 0.96353 1.70599 1.24152 1.21130 1.11239 1.26091 0.96133 0.88229 0.99946 1.78092 1.16084 1.17663 1.02509 1.23556 0.99357 1.02277 0.92775 1.24629 1.00799 0.94977 0.96642 1.20918 0.88047 1.01796 1.06064 1.84497 0.95204 1.08653 1.69080 0.91090 0.88651 0.89490 0.88283 0.77976 1.16494 1.15749 0.74243 0.90645 0.88955 0.88879 0.88662 0.77118 0.76550 0.88480 0.88661 0.90306 0.88734 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.04 8.84 36.01 0.32 0.27 16 2 C -0.17 -0.19 6.08 -36.00 -0.22 -0.41 16 3 C -0.08 -0.09 4.42 -106.25 -0.47 -0.56 16 4 C -0.09 -0.04 2.04 36.01 0.07 0.04 16 5 O -0.53 -0.51 11.45 -35.23 -0.40 -0.92 16 6 Si 0.72 -0.86 27.60 -169.99 -4.69 -5.55 16 7 C -0.69 -0.52 5.85 -41.21 -0.24 -0.77 16 8 S 2.71 0.90 5.44 -107.50 -0.58 0.32 16 9 O -0.95 -2.42 14.68 -57.17 -0.84 -3.26 16 10 O -0.95 -1.99 14.71 -57.17 -0.84 -2.84 16 11 N -1.11 3.50 6.00 -10.61 -0.06 3.44 16 12 C 0.10 -0.38 3.98 -4.04 -0.02 -0.40 16 13 C -0.11 0.59 3.78 -89.81 -0.34 0.25 16 14 H 0.12 -0.75 8.14 -51.93 -0.42 -1.18 16 15 C -0.14 0.76 6.99 -25.92 -0.18 0.58 16 16 C 0.13 -0.44 5.07 -67.12 -0.34 -0.78 16 17 H 0.13 -0.49 8.14 -51.93 -0.42 -0.91 16 18 N -0.37 0.01 3.83 -55.32 -0.21 -0.20 16 19 C 0.25 0.01 11.87 -90.65 -1.08 -1.06 16 20 N -0.54 -1.46 11.19 -15.83 -0.18 -1.63 16 21 C 0.20 0.38 13.03 -91.81 -1.20 -0.82 16 22 N -0.32 -0.79 12.70 29.29 0.37 -0.42 16 23 C -0.14 0.62 7.44 -25.92 -0.19 0.42 16 24 C -0.05 -0.02 6.50 -36.00 -0.23 -0.25 16 25 C -0.11 0.12 8.63 36.01 0.31 0.43 16 26 S 0.16 0.03 23.31 -107.50 -2.51 -2.47 16 27 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.09 0.06 7.32 -51.93 -0.38 -0.32 16 29 H 0.09 0.05 4.47 -51.93 -0.23 -0.19 16 30 H 0.10 -0.01 2.78 -51.93 -0.14 -0.15 16 31 H 0.37 -0.28 9.12 45.56 0.42 0.13 16 32 H -0.24 0.50 5.59 56.52 0.32 0.81 16 33 H -0.23 -0.15 5.21 56.52 0.29 0.14 16 34 H 0.42 -2.26 8.65 -34.48 -0.30 -2.56 16 35 H 0.08 -0.28 4.24 -51.93 -0.22 -0.50 16 36 H 0.09 -0.36 5.96 -51.93 -0.31 -0.67 16 37 H 0.09 -0.58 8.14 -51.93 -0.42 -1.00 16 38 H 0.09 -0.52 6.14 -51.93 -0.32 -0.84 16 39 H 0.21 -0.75 6.75 -52.48 -0.35 -1.10 16 40 H 0.22 -0.27 8.06 -52.49 -0.42 -0.70 16 41 H 0.10 -0.40 8.10 -51.93 -0.42 -0.82 16 42 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 43 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 44 H 0.09 -0.21 7.85 -51.93 -0.41 -0.62 16 45 H 0.11 -0.04 7.04 -51.93 -0.37 -0.40 16 LS Contribution 371.56 15.07 5.60 5.60 Total: 0.00 -10.31 371.56 -13.53 -23.85 By element: Atomic # 1 Polarization: -7.46 SS G_CDS: -5.38 Total: -12.85 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.80 Total: -3.06 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -0.08 Total: 1.18 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -2.08 Total: -7.01 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -4.69 Total: -5.55 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -3.09 Total: -2.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -10.31 -13.53 -23.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567542_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.811 kcal (2) G-P(sol) polarization free energy of solvation -10.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds