Wall clock time and date at job start Mon Mar 8 2021 10:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33395 * 125.20548 * 2 1 4 4 C 1.50699 * 122.53559 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47187 * 59.41069 * 4 3 2 6 6 Si 1.86292 * 109.47326 * 299.40521 * 4 3 2 7 7 C 1.38424 * 114.92258 * 180.02562 * 3 2 1 8 8 S 1.76191 * 122.54000 * 179.97438 * 7 3 2 9 9 O 1.42099 * 106.40522 * 34.03290 * 8 7 3 10 10 O 1.42097 * 106.40377 * 166.95634 * 8 7 3 11 11 N 1.65606 * 107.21782 * 280.49200 * 8 7 3 12 12 C 1.46502 * 119.99924 * 64.99982 * 11 8 7 13 13 C 1.53001 * 109.47074 * 165.00320 * 12 11 8 14 14 H 1.08997 * 112.84557 * 316.19386 * 13 12 11 15 15 C 1.53779 * 113.61398 * 87.50185 * 13 12 11 16 16 C 1.53786 * 87.08017 * 139.98043 * 15 13 12 17 17 H 1.09004 * 113.68736 * 89.12418 * 16 15 13 18 18 N 1.46494 * 113.61522 * 220.02046 * 16 15 13 19 19 C 1.34428 * 126.82502 * 12.19987 * 18 16 15 20 20 N 1.30834 * 108.07978 * 179.89709 * 19 18 16 21 21 C 1.33241 * 109.82504 * 0.38231 * 20 19 18 22 22 N 1.30713 * 108.94833 * 359.76554 * 21 20 19 23 23 C 1.53781 * 113.61262 * 185.00178 * 13 12 11 24 24 C 1.33393 * 114.91633 * 359.97438 * 7 3 2 25 25 C 1.50702 * 125.19750 * 179.97438 * 24 7 3 26 26 S 1.75880 * 109.59847 * 0.02562 * 24 7 3 27 27 H 1.08996 * 109.47479 * 181.74130 * 1 2 3 28 28 H 1.09003 * 109.46639 * 301.74073 * 1 2 3 29 29 H 1.09004 * 109.47169 * 61.73480 * 1 2 3 30 30 H 1.09005 * 109.46612 * 179.40309 * 4 3 2 31 31 H 0.96698 * 114.00376 * 68.13848 * 5 4 3 32 32 H 1.48494 * 110.00357 * 310.68535 * 6 4 3 33 33 H 1.48497 * 110.00071 * 72.00894 * 6 4 3 34 34 H 0.97001 * 120.00183 * 245.00481 * 11 8 7 35 35 H 1.09000 * 109.46653 * 285.00257 * 12 11 8 36 36 H 1.09001 * 109.46841 * 45.00271 * 12 11 8 37 37 H 1.09001 * 113.61187 * 254.52692 * 15 13 12 38 38 H 1.08999 * 113.61581 * 25.43135 * 15 13 12 39 39 H 1.08006 * 125.95834 * 0.04723 * 19 18 16 40 40 H 1.08001 * 125.52329 * 179.79818 * 21 20 19 41 41 H 1.08998 * 113.61355 * 334.56709 * 23 13 12 42 42 H 1.09004 * 113.61634 * 105.46971 * 23 13 12 43 43 H 1.09004 * 109.46837 * 180.02562 * 25 24 7 44 44 H 1.09003 * 109.47024 * 300.00950 * 25 24 7 45 45 H 1.09000 * 109.47675 * 60.01586 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4847 -0.0006 5 8 0.8898 2.6661 1.1588 6 14 0.6724 2.7324 -1.5311 7 6 3.6380 0.8429 -0.0006 8 16 4.8357 2.1351 -0.0013 9 8 4.2803 3.1975 0.7616 10 8 6.0826 1.5269 0.3059 11 7 4.9569 2.6902 -1.5569 12 6 3.8119 3.3483 -2.1911 13 6 4.2792 4.0853 -3.4479 14 1 5.2059 4.6382 -3.2943 15 6 4.2854 3.2074 -4.7104 16 6 3.7432 4.4308 -5.4683 17 1 4.5229 5.0785 -5.8692 18 7 2.7143 4.0999 -6.4572 19 6 2.0692 2.9277 -6.5874 20 7 1.2285 3.0354 -7.5840 21 6 1.3137 4.2534 -8.1175 22 7 2.2104 4.9422 -7.4617 23 6 3.1730 4.9126 -4.1238 24 6 3.9750 -0.4478 -0.0005 25 6 5.3860 -0.9772 -0.0016 26 16 2.5209 -1.4372 -0.0004 27 1 -0.3634 -1.0271 0.0312 28 1 -0.3633 0.5407 0.8740 29 1 -0.3634 0.4867 -0.9052 30 1 2.5187 3.2101 0.0102 31 1 1.3842 2.6754 1.9899 32 1 1.4313 2.2988 -2.7316 33 1 -0.5907 1.9593 -1.4221 34 1 5.7860 2.5796 -2.0481 35 1 3.0682 2.5997 -2.4643 36 1 3.3710 4.0613 -1.4945 37 1 5.2836 2.9048 -5.0269 38 1 3.5835 2.3746 -4.6666 39 1 2.2173 2.0508 -5.9745 40 1 0.7353 4.6133 -8.9556 41 1 2.1671 4.5460 -3.9196 42 1 3.2732 5.9866 -3.9668 43 1 5.3652 -2.0670 -0.0017 44 1 5.9060 -0.6238 -0.8920 45 1 5.9075 -0.6237 0.8880 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567542_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:42 Heat of formation + Delta-G solvation = 65.807033 kcal Electronic energy + Delta-G solvation = -32811.436798 eV Core-core repulsion = 28474.151264 eV Total energy + Delta-G solvation = -4337.285534 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.096 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.10000 -40.48519 -40.23159 -38.67430 -37.12695 -37.09410 -36.14611 -34.33327 -33.31995 -32.13626 -30.97605 -28.64983 -27.99661 -26.88678 -26.06012 -24.98212 -23.28691 -22.94125 -22.42378 -20.99708 -20.47712 -20.01539 -19.25180 -18.59159 -18.35826 -18.15548 -17.45013 -17.17329 -16.88354 -16.49292 -16.24586 -15.98003 -15.72267 -15.49769 -15.27951 -15.23174 -14.97557 -14.86545 -14.56820 -14.28931 -14.15331 -13.92709 -13.58806 -13.54891 -13.53346 -13.40296 -13.35359 -13.24006 -13.13180 -12.76528 -12.73940 -12.64146 -12.18734 -11.99370 -11.75085 -11.56342 -11.47902 -11.32568 -11.02530 -11.00977 -10.82114 -10.53101 -10.49255 -10.11309 -9.60951 -4.94970 -0.86839 -0.54202 0.27853 0.58233 0.65277 0.72514 1.22307 1.39188 1.45658 1.90875 1.93503 1.98598 2.54776 3.09879 3.12945 3.32036 3.40047 3.44566 3.55569 3.59100 3.68651 3.75145 3.88503 3.92558 4.03939 4.07726 4.17284 4.20397 4.25158 4.33582 4.42536 4.45318 4.52154 4.61027 4.63494 4.64828 4.74977 4.80221 4.85002 4.92240 4.93233 5.01727 5.05825 5.12500 5.21748 5.44025 5.46461 5.90426 6.00559 6.55487 7.11356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.184 4.184 3 C -0.088 4.088 4 C -0.105 4.105 5 O -0.539 6.539 6 Si 0.754 3.246 7 C -0.697 4.697 8 S 2.717 3.283 9 O -0.972 6.972 10 O -0.970 6.970 11 N -1.098 6.098 12 C 0.093 3.907 13 C -0.098 4.098 14 H 0.133 0.867 15 C -0.138 4.138 16 C 0.120 3.880 17 H 0.133 0.867 18 N -0.366 5.366 19 C 0.251 3.749 20 N -0.580 5.580 21 C 0.188 3.812 22 N -0.348 5.348 23 C -0.141 4.141 24 C -0.051 4.051 25 C -0.115 4.115 26 S 0.169 5.831 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.377 0.623 32 H -0.222 1.222 33 H -0.261 1.261 34 H 0.434 0.566 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.243 0.757 40 H 0.235 0.765 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -0.757 -1.266 2.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.302 4.302 3 C -0.099 4.099 4 C -0.215 4.215 5 O -0.345 6.345 6 Si 0.653 3.347 7 C -0.796 4.796 8 S 2.805 3.195 9 O -0.962 6.962 10 O -0.960 6.960 11 N -0.863 5.863 12 C -0.032 4.032 13 C -0.119 4.119 14 H 0.150 0.850 15 C -0.176 4.176 16 C 0.018 3.982 17 H 0.151 0.849 18 N -0.156 5.156 19 C -0.045 4.045 20 N -0.308 5.308 21 C -0.114 4.114 22 N -0.176 5.176 23 C -0.181 4.181 24 C -0.173 4.173 25 C -0.173 4.173 26 S 0.435 5.565 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.225 0.775 32 H -0.147 1.147 33 H -0.188 1.188 34 H 0.272 0.728 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.259 0.741 40 H 0.251 0.749 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.537 -1.879 -1.778 3.009 hybrid contribution 0.892 -0.287 0.937 1.325 sum 2.429 -2.166 -0.840 3.361 Atomic orbital electron populations 1.20843 0.86907 1.03852 1.04442 1.24640 1.00849 0.95482 1.09254 1.18730 0.90392 0.97457 1.03326 1.26011 1.03286 0.91803 1.00366 1.86599 1.36405 1.95173 1.16285 0.94139 0.78136 0.89981 0.72490 1.29562 1.11716 1.13780 1.24540 1.01091 0.72348 0.72919 0.73127 1.93520 1.79663 1.53953 1.69023 1.93582 1.41469 1.77865 1.83054 1.55182 1.23273 1.73671 1.34133 1.22111 0.87809 0.97141 0.96135 1.22522 1.00990 0.97089 0.91266 0.84954 1.23665 1.04134 0.95971 0.93856 1.23370 0.88881 1.01056 0.84884 0.84932 1.50764 1.30853 1.09500 1.24509 1.26476 0.89711 0.92430 0.95851 1.70579 1.25750 1.21797 1.12672 1.26506 0.96256 0.88193 1.00449 1.78006 1.16852 1.19026 1.03698 1.23592 0.99594 1.02769 0.92112 1.24871 1.01439 0.94956 0.96009 1.21034 0.87187 1.02849 1.06249 1.84404 0.94967 1.08198 1.68938 0.90177 0.89317 0.89672 0.87923 0.77469 1.14676 1.18824 0.72753 0.90517 0.88777 0.87419 0.88127 0.74093 0.74901 0.88644 0.88253 0.88778 0.87453 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.16 8.84 71.24 0.63 0.47 16 2 C -0.18 -0.49 6.08 24.59 0.15 -0.34 16 3 C -0.09 -0.22 4.42 -20.92 -0.09 -0.31 16 4 C -0.11 -0.12 2.04 71.24 0.15 0.03 16 5 O -0.54 -1.57 11.45 -148.98 -1.71 -3.28 16 6 Si 0.75 -1.87 27.60 68.60 1.89 0.02 16 7 C -0.70 -1.02 5.85 21.22 0.12 -0.90 16 8 S 2.72 1.34 5.44 -56.49 -0.31 1.04 16 9 O -0.97 -5.29 14.68 -128.00 -1.88 -7.16 16 10 O -0.97 -3.96 14.71 -128.00 -1.88 -5.85 16 11 N -1.10 8.23 6.00 -187.48 -1.12 7.10 16 12 C 0.09 -0.82 3.98 86.38 0.34 -0.47 16 13 C -0.10 1.23 3.78 -10.27 -0.04 1.19 16 14 H 0.13 -2.04 8.14 -2.39 -0.02 -2.06 16 15 C -0.14 1.74 6.99 31.12 0.22 1.96 16 16 C 0.12 -0.93 5.07 45.52 0.23 -0.70 16 17 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 18 N -0.37 0.18 3.83 -328.92 -1.26 -1.08 16 19 C 0.25 -0.13 11.87 180.36 2.14 2.01 16 20 N -0.58 -3.22 11.19 -203.99 -2.28 -5.51 16 21 C 0.19 0.84 13.03 180.76 2.36 3.19 16 22 N -0.35 -1.89 12.70 -61.24 -0.78 -2.67 16 23 C -0.14 1.41 7.44 31.12 0.23 1.64 16 24 C -0.05 -0.02 6.50 24.59 0.16 0.14 16 25 C -0.11 0.32 8.63 71.24 0.62 0.93 16 26 S 0.17 0.05 23.31 -56.49 -1.32 -1.26 16 27 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.09 0.23 7.32 -2.39 -0.02 0.21 16 29 H 0.09 0.17 4.47 -2.39 -0.01 0.15 16 30 H 0.10 0.01 2.78 -2.38 -0.01 0.00 16 31 H 0.38 -0.07 9.12 -74.06 -0.68 -0.75 16 32 H -0.22 1.24 5.59 99.48 0.56 1.79 16 33 H -0.26 -0.59 5.21 99.48 0.52 -0.07 16 34 H 0.43 -5.39 8.65 -96.74 -0.84 -6.23 16 35 H 0.08 -0.68 4.24 -2.39 -0.01 -0.69 16 36 H 0.09 -0.82 5.96 -2.39 -0.01 -0.83 16 37 H 0.11 -1.62 8.14 -2.39 -0.02 -1.64 16 38 H 0.10 -1.35 6.14 -2.39 -0.01 -1.36 16 39 H 0.24 -2.11 6.75 -2.91 -0.02 -2.13 16 40 H 0.23 -0.39 8.06 -2.91 -0.02 -0.41 16 41 H 0.10 -0.89 8.10 -2.39 -0.02 -0.91 16 42 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.09 -0.57 8.14 -2.38 -0.02 -0.59 16 44 H 0.11 -0.59 7.85 -2.39 -0.02 -0.61 16 45 H 0.10 -0.06 7.04 -2.39 -0.02 -0.08 16 Total: 0.00 -24.15 371.56 -4.16 -28.30 By element: Atomic # 1 Polarization: -17.78 SS G_CDS: -0.73 Total: -18.50 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 7.21 Total: 8.84 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -5.44 Total: -2.15 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -5.47 Total: -16.29 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 1.89 Total: 0.02 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.62 Total: -0.23 kcal Total: -24.15 -4.16 -28.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567542_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.111 kcal (2) G-P(sol) polarization free energy of solvation -24.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds