Wall clock time and date at job start Mon Mar 8 2021 10:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47409 * 2 1 4 4 C 1.50698 * 109.47486 * 120.00743 * 2 1 3 5 5 C 1.33384 * 122.54310 * 74.99504 * 4 2 1 6 6 S 1.76204 * 125.20254 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.39972 * 66.18112 * 6 5 4 8 8 O 1.42098 * 106.40426 * 293.26285 * 6 5 4 9 9 N 1.65595 * 107.21987 * 179.71997 * 6 5 4 10 10 C 1.46508 * 119.99876 * 65.00402 * 9 6 5 11 11 H 1.09003 * 112.84505 * 15.33040 * 10 9 6 12 12 C 1.53771 * 113.61491 * 146.52889 * 10 9 6 13 13 C 1.53785 * 87.08111 * 139.98103 * 12 10 9 14 14 H 1.09000 * 113.61325 * 219.93467 * 13 12 10 15 15 N 1.46497 * 113.61307 * 89.11686 * 13 12 10 16 16 C 1.35314 * 125.86800 * 274.71189 * 15 13 12 17 17 C 1.35351 * 106.17581 * 179.90644 * 16 15 13 18 18 N 1.33772 * 106.49591 * 0.35798 * 17 16 15 19 19 N 1.28639 * 108.88409 * 359.76607 * 18 17 16 20 20 C 1.53783 * 113.61345 * 244.13928 * 10 9 6 21 21 S 1.75879 * 109.59450 * 179.75735 * 5 4 2 22 22 C 1.75883 * 90.97340 * 0.22552 * 21 5 4 23 23 C 1.33390 * 109.58925 * 0.02562 * 22 21 5 24 24 H 0.96704 * 113.99287 * 300.00001 * 1 2 3 25 25 H 1.09007 * 109.46562 * 240.00722 * 2 1 3 26 26 H 1.48497 * 109.99987 * 300.00243 * 3 2 1 27 27 H 1.48500 * 109.99643 * 61.32108 * 3 2 1 28 28 H 0.96997 * 120.00034 * 245.00430 * 9 6 5 29 29 H 1.08995 * 113.61596 * 254.52672 * 12 10 9 30 30 H 1.09002 * 113.61596 * 25.43558 * 12 10 9 31 31 H 1.08000 * 126.91080 * 0.02562 * 16 15 13 32 32 H 1.07997 * 126.74826 * 180.12495 * 17 16 15 33 33 H 1.09002 * 113.61077 * 334.56196 * 20 10 9 34 34 H 1.08995 * 113.61721 * 105.47043 * 20 10 9 35 35 H 1.07998 * 125.20707 * 180.02562 * 22 21 5 36 36 H 1.08006 * 122.53642 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.8961 -2.0379 1.3570 6 16 1.2762 -3.1577 0.1461 7 8 2.1521 -3.0678 -0.9693 8 8 -0.1219 -2.9195 0.0575 9 7 1.4522 -4.6869 0.7567 10 6 0.6990 -5.0918 1.9464 11 1 -0.1237 -4.4149 2.1770 12 6 0.2941 -6.5752 1.9437 13 6 0.6350 -6.5897 3.4432 14 1 1.1424 -7.4986 3.7668 15 7 -0.4938 -6.2307 4.3052 16 6 -0.8652 -4.9741 4.6429 17 6 -1.9481 -5.1036 5.4446 18 7 -2.1782 -6.4160 5.5630 19 7 -1.2993 -7.0566 4.8760 20 6 1.5888 -5.4153 3.1582 21 16 2.5702 -2.4999 2.9144 22 6 2.8646 -0.8141 3.3208 23 6 2.4608 -0.0349 2.3163 24 1 -0.3932 0.4417 0.7651 25 1 1.7922 -0.5138 -0.8901 26 1 1.5615 2.4679 -1.2084 27 1 1.5880 2.4584 1.2243 28 1 2.0540 -5.3145 0.3268 29 1 -0.7631 -6.7389 1.7348 30 1 0.9483 -7.2053 1.3411 31 1 -0.3938 -4.0531 4.3333 32 1 -2.5126 -4.3046 5.9020 33 1 2.5976 -5.7278 2.8881 34 1 1.5753 -4.6440 3.9282 35 1 3.3049 -0.4636 4.2425 36 1 2.5452 1.0415 2.3460 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567558_13652106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:15 Heat of formation + Delta-G solvation = 83.344666 kcal Electronic energy + Delta-G solvation = -26309.615688 eV Core-core repulsion = 22439.703500 eV Total energy + Delta-G solvation = -3869.912188 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.36401 -40.82472 -40.21835 -38.24561 -37.30201 -36.92505 -35.45905 -33.09862 -32.02220 -31.63823 -28.18270 -27.48808 -26.66516 -24.52644 -23.64375 -23.40638 -21.88224 -21.27683 -20.15031 -19.93645 -18.76835 -18.68221 -18.17389 -17.93288 -17.14467 -16.82053 -16.52997 -16.28367 -16.07824 -16.03360 -15.72943 -15.43885 -15.02830 -14.60283 -14.43773 -14.25617 -14.16706 -14.02639 -13.69554 -13.22100 -13.16234 -13.03128 -12.91457 -12.77030 -12.70215 -12.59668 -12.36609 -12.17685 -11.85410 -11.69234 -11.09126 -10.99165 -10.83603 -10.59662 -10.38827 -9.87609 -5.11187 -0.85934 -0.83979 0.02391 0.39363 0.54116 1.04330 1.06143 1.14247 1.42194 1.62878 1.70986 1.82310 2.46365 2.56627 2.80178 3.05405 3.14044 3.28968 3.31975 3.41338 3.46499 3.69836 3.77155 3.90211 3.93861 4.01067 4.08048 4.12569 4.19201 4.23400 4.27929 4.46846 4.48065 4.64992 4.66774 4.73308 4.85691 5.16812 5.53044 5.54361 6.23528 7.52716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.107 4.107 3 Si 0.710 3.290 4 C 0.012 3.988 5 C -0.768 4.768 6 S 2.712 3.288 7 O -0.944 6.944 8 O -0.924 6.924 9 N -1.104 6.104 10 C 0.115 3.885 11 H 0.124 0.876 12 C -0.141 4.141 13 C 0.118 3.882 14 H 0.136 0.864 15 N -0.277 5.277 16 C -0.057 4.057 17 C -0.045 4.045 18 N -0.268 5.268 19 N -0.078 5.078 20 C -0.165 4.165 21 S 0.198 5.802 22 C -0.161 4.161 23 C -0.163 4.163 24 H 0.379 0.621 25 H 0.128 0.872 26 H -0.247 1.247 27 H -0.252 1.252 28 H 0.425 0.575 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.187 0.813 32 H 0.192 0.808 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.179 0.821 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.334 2.337 2.640 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.218 4.218 3 Si 0.609 3.391 4 C -0.005 4.005 5 C -0.968 4.968 6 S 2.796 3.204 7 O -0.934 6.934 8 O -0.913 6.913 9 N -0.864 5.864 10 C 0.007 3.993 11 H 0.142 0.858 12 C -0.181 4.181 13 C 0.014 3.986 14 H 0.153 0.847 15 N -0.071 5.071 16 C -0.207 4.207 17 C -0.201 4.201 18 N -0.134 5.134 19 N -0.057 5.057 20 C -0.205 4.205 21 S 0.464 5.536 22 C -0.298 4.298 23 C -0.192 4.192 24 H 0.227 0.773 25 H 0.145 0.855 26 H -0.171 1.171 27 H -0.177 1.177 28 H 0.262 0.738 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.204 0.796 32 H 0.209 0.791 33 H 0.144 0.856 34 H 0.113 0.887 35 H 0.197 0.803 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.639 0.364 2.358 7.055 hybrid contribution -0.204 2.303 0.249 2.325 sum 6.436 2.667 2.607 7.438 Atomic orbital electron populations 1.86797 1.15536 1.79966 1.49076 1.25362 0.85625 1.13561 0.97247 0.94587 0.91058 0.72457 0.81017 1.18993 0.93734 0.91302 0.96521 1.35694 1.26189 1.14389 1.20494 1.01749 0.74394 0.71759 0.72462 1.93643 1.67520 1.85572 1.46690 1.93676 1.29323 1.83868 1.84481 1.55583 1.57946 1.31358 1.41500 1.22633 0.94362 0.98198 0.84104 0.85799 1.23762 1.05071 0.95762 0.93523 1.22348 0.84779 1.01154 0.90270 0.84651 1.47181 1.22114 1.05097 1.32724 1.23622 1.01514 0.90450 1.05115 1.23685 0.98505 0.95358 1.02599 1.75193 1.17307 1.04842 1.16018 1.78386 0.99940 1.18755 1.08612 1.24194 1.00179 0.97408 0.98764 1.84067 1.56598 1.06052 1.06862 1.26191 1.03254 0.96872 1.03518 1.20363 1.03395 1.02198 0.93277 0.77324 0.85465 1.17132 1.17703 0.73835 0.88817 0.86109 0.79560 0.79112 0.85573 0.88719 0.80345 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -0.95 12.32 -35.88 -0.44 -1.39 16 2 C -0.11 -0.04 2.33 36.00 0.08 0.04 16 3 Si 0.71 -1.21 30.47 -169.99 -5.18 -6.39 16 4 C 0.01 -0.01 5.13 -106.25 -0.55 -0.55 16 5 C -0.77 0.37 6.46 29.04 0.19 0.55 16 6 S 2.71 2.82 5.05 -107.50 -0.54 2.28 16 7 O -0.94 -3.55 17.48 -57.17 -1.00 -4.55 16 8 O -0.92 -3.98 16.97 -59.41 -1.01 -4.99 16 9 N -1.10 3.44 5.61 -4.20 -0.02 3.41 16 10 C 0.12 -0.44 3.44 -67.12 -0.23 -0.67 16 11 H 0.12 -0.38 6.62 -51.93 -0.34 -0.72 16 12 C -0.14 0.59 7.66 -25.92 -0.20 0.39 16 13 C 0.12 -0.45 5.11 -67.03 -0.34 -0.80 16 14 H 0.14 -0.68 8.14 -51.93 -0.42 -1.11 16 15 N -0.28 0.06 3.52 -53.88 -0.19 -0.13 16 16 C -0.06 0.07 9.68 -17.05 -0.17 -0.10 16 17 C -0.04 -0.04 12.05 -17.74 -0.21 -0.25 16 18 N -0.27 -1.21 12.41 30.23 0.38 -0.83 16 19 N -0.08 -0.28 13.16 60.35 0.79 0.51 16 20 C -0.16 0.94 5.65 -25.83 -0.15 0.80 16 21 S 0.20 -0.71 19.63 -107.50 -2.11 -2.82 16 22 C -0.16 0.59 11.23 29.04 0.33 0.91 16 23 C -0.16 0.40 8.74 -41.21 -0.36 0.04 16 24 H 0.38 -0.67 8.70 45.56 0.40 -0.28 16 25 H 0.13 0.12 7.23 -51.92 -0.38 -0.25 16 26 H -0.25 -0.37 7.11 56.52 0.40 0.04 16 27 H -0.25 0.27 6.80 56.52 0.38 0.66 16 28 H 0.43 -2.32 8.93 -34.47 -0.31 -2.62 16 29 H 0.09 -0.22 8.14 -51.93 -0.42 -0.65 16 30 H 0.12 -0.78 8.14 -51.93 -0.42 -1.20 16 31 H 0.19 -0.86 6.74 -52.49 -0.35 -1.22 16 32 H 0.19 -0.40 8.06 -52.49 -0.42 -0.82 16 33 H 0.13 -0.98 8.14 -51.93 -0.42 -1.40 16 34 H 0.09 -0.58 5.60 -51.93 -0.29 -0.87 16 35 H 0.18 -1.11 8.06 -52.49 -0.42 -1.53 16 36 H 0.16 -0.63 5.54 -52.48 -0.29 -0.92 16 LS Contribution 326.04 15.07 4.91 4.91 Total: 0.00 -13.19 326.04 -9.33 -22.52 By element: Atomic # 1 Polarization: -9.58 SS G_CDS: -3.32 Total: -12.89 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.60 Total: 0.36 kcal Atomic # 7 Polarization: 2.01 SS G_CDS: 0.96 Total: 2.96 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -2.45 Total: -10.93 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.18 Total: -6.39 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.65 Total: -0.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -13.19 -9.33 -22.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_13652106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.864 kcal (2) G-P(sol) polarization free energy of solvation -13.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds