Wall clock time and date at job start Mon Mar 8 2021 10:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47409 * 2 1 4 4 C 1.50698 * 109.47486 * 120.00743 * 2 1 3 5 5 C 1.33384 * 122.54310 * 74.99504 * 4 2 1 6 6 S 1.76204 * 125.20254 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.39972 * 66.18112 * 6 5 4 8 8 O 1.42098 * 106.40426 * 293.26285 * 6 5 4 9 9 N 1.65595 * 107.21987 * 179.71997 * 6 5 4 10 10 C 1.46508 * 119.99876 * 65.00402 * 9 6 5 11 11 H 1.09003 * 112.84505 * 15.33040 * 10 9 6 12 12 C 1.53771 * 113.61491 * 146.52889 * 10 9 6 13 13 C 1.53785 * 87.08111 * 139.98103 * 12 10 9 14 14 H 1.09000 * 113.61325 * 219.93467 * 13 12 10 15 15 N 1.46497 * 113.61307 * 89.11686 * 13 12 10 16 16 C 1.35314 * 125.86800 * 274.71189 * 15 13 12 17 17 C 1.35351 * 106.17581 * 179.90644 * 16 15 13 18 18 N 1.33772 * 106.49591 * 0.35798 * 17 16 15 19 19 N 1.28639 * 108.88409 * 359.76607 * 18 17 16 20 20 C 1.53783 * 113.61345 * 244.13928 * 10 9 6 21 21 S 1.75879 * 109.59450 * 179.75735 * 5 4 2 22 22 C 1.75883 * 90.97340 * 0.22552 * 21 5 4 23 23 C 1.33390 * 109.58925 * 0.02562 * 22 21 5 24 24 H 0.96704 * 113.99287 * 300.00001 * 1 2 3 25 25 H 1.09007 * 109.46562 * 240.00722 * 2 1 3 26 26 H 1.48497 * 109.99987 * 300.00243 * 3 2 1 27 27 H 1.48500 * 109.99643 * 61.32108 * 3 2 1 28 28 H 0.96997 * 120.00034 * 245.00430 * 9 6 5 29 29 H 1.08995 * 113.61596 * 254.52672 * 12 10 9 30 30 H 1.09002 * 113.61596 * 25.43558 * 12 10 9 31 31 H 1.08000 * 126.91080 * 0.02562 * 16 15 13 32 32 H 1.07997 * 126.74826 * 180.12495 * 17 16 15 33 33 H 1.09002 * 113.61077 * 334.56196 * 20 10 9 34 34 H 1.08995 * 113.61721 * 105.47043 * 20 10 9 35 35 H 1.07998 * 125.20707 * 180.02562 * 22 21 5 36 36 H 1.08006 * 122.53642 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.8961 -2.0379 1.3570 6 16 1.2762 -3.1577 0.1461 7 8 2.1521 -3.0678 -0.9693 8 8 -0.1219 -2.9195 0.0575 9 7 1.4522 -4.6869 0.7567 10 6 0.6990 -5.0918 1.9464 11 1 -0.1237 -4.4149 2.1770 12 6 0.2941 -6.5752 1.9437 13 6 0.6350 -6.5897 3.4432 14 1 1.1424 -7.4986 3.7668 15 7 -0.4938 -6.2307 4.3052 16 6 -0.8652 -4.9741 4.6429 17 6 -1.9481 -5.1036 5.4446 18 7 -2.1782 -6.4160 5.5630 19 7 -1.2993 -7.0566 4.8760 20 6 1.5888 -5.4153 3.1582 21 16 2.5702 -2.4999 2.9144 22 6 2.8646 -0.8141 3.3208 23 6 2.4608 -0.0349 2.3163 24 1 -0.3932 0.4417 0.7651 25 1 1.7922 -0.5138 -0.8901 26 1 1.5615 2.4679 -1.2084 27 1 1.5880 2.4584 1.2243 28 1 2.0540 -5.3145 0.3268 29 1 -0.7631 -6.7389 1.7348 30 1 0.9483 -7.2053 1.3411 31 1 -0.3938 -4.0531 4.3333 32 1 -2.5126 -4.3046 5.9020 33 1 2.5976 -5.7278 2.8881 34 1 1.5753 -4.6440 3.9282 35 1 3.3049 -0.4636 4.2425 36 1 2.5452 1.0415 2.3460 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567558_13652106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:14 Heat of formation + Delta-G solvation = 74.117298 kcal Electronic energy + Delta-G solvation = -26310.015817 eV Core-core repulsion = 22439.703500 eV Total energy + Delta-G solvation = -3870.312317 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.049 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.34957 -40.56972 -40.06861 -38.40004 -37.27965 -37.07514 -35.34553 -33.01276 -32.01447 -31.43857 -28.10739 -27.12168 -26.48945 -24.34612 -23.62900 -23.30690 -21.77485 -21.11087 -20.06882 -19.79620 -18.73618 -18.52546 -18.05034 -17.74084 -17.12757 -16.75546 -16.50961 -16.17854 -16.05192 -15.90711 -15.58990 -15.29774 -14.87133 -14.41440 -14.23063 -14.13991 -13.95703 -13.65138 -13.61087 -13.38721 -13.30662 -12.95910 -12.82160 -12.77881 -12.62557 -12.45216 -12.31463 -12.01962 -11.80088 -11.53129 -11.03772 -10.80470 -10.73535 -10.39799 -10.38810 -9.59158 -4.98856 -0.86273 -0.65517 0.23049 0.57418 0.66978 1.14059 1.27653 1.33402 1.52358 1.57152 1.81875 1.90749 2.47314 2.87918 3.11293 3.20070 3.35541 3.44864 3.45441 3.57660 3.71601 3.92229 4.01097 4.08828 4.17510 4.23969 4.30945 4.31920 4.40531 4.56539 4.64400 4.73029 4.76436 4.83448 4.92673 5.03767 5.09557 5.21442 5.66507 5.88078 6.36549 7.47683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.132 4.132 3 Si 0.797 3.203 4 C 0.003 3.997 5 C -0.796 4.796 6 S 2.720 3.280 7 O -0.983 6.983 8 O -0.969 6.969 9 N -1.090 6.090 10 C 0.104 3.896 11 H 0.114 0.886 12 C -0.139 4.139 13 C 0.107 3.893 14 H 0.151 0.849 15 N -0.270 5.270 16 C -0.044 4.044 17 C -0.062 4.062 18 N -0.315 5.315 19 N -0.117 5.117 20 C -0.149 4.149 21 S 0.250 5.750 22 C -0.152 4.152 23 C -0.177 4.177 24 H 0.391 0.609 25 H 0.109 0.891 26 H -0.299 1.299 27 H -0.250 1.250 28 H 0.437 0.563 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.222 0.778 32 H 0.212 0.788 33 H 0.156 0.844 34 H 0.105 0.895 35 H 0.211 0.789 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 2.886 4.422 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.241 4.241 3 Si 0.697 3.303 4 C -0.015 4.015 5 C -0.999 4.999 6 S 2.808 3.192 7 O -0.973 6.973 8 O -0.959 6.959 9 N -0.853 5.853 10 C -0.003 4.003 11 H 0.132 0.868 12 C -0.179 4.179 13 C 0.005 3.995 14 H 0.169 0.831 15 N -0.064 5.064 16 C -0.195 4.195 17 C -0.220 4.220 18 N -0.180 5.180 19 N -0.096 5.096 20 C -0.190 4.190 21 S 0.516 5.484 22 C -0.290 4.290 23 C -0.206 4.206 24 H 0.240 0.760 25 H 0.127 0.873 26 H -0.226 1.226 27 H -0.174 1.174 28 H 0.277 0.723 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.239 0.761 32 H 0.229 0.771 33 H 0.174 0.826 34 H 0.123 0.877 35 H 0.228 0.772 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.930 0.833 4.132 9.875 hybrid contribution -0.898 2.117 -0.318 2.321 sum 8.032 2.949 3.815 9.368 Atomic orbital electron populations 1.86748 1.16787 1.80684 1.50126 1.25739 0.85043 1.15843 0.97493 0.93639 0.89568 0.69040 0.78063 1.19060 0.94214 0.91506 0.96732 1.35387 1.28007 1.14221 1.22246 1.00950 0.73194 0.72569 0.72514 1.93583 1.67963 1.86457 1.49330 1.93619 1.31824 1.84898 1.85509 1.55204 1.58256 1.29973 1.41859 1.22803 0.94864 0.98153 0.84522 0.86799 1.23841 1.04325 0.95934 0.93790 1.22699 0.84241 1.02819 0.89739 0.83123 1.47488 1.21952 1.05070 1.31920 1.24150 1.00611 0.91218 1.03539 1.24209 0.99603 0.94802 1.03379 1.75116 1.18662 1.06691 1.17544 1.78287 1.01199 1.19905 1.10225 1.24266 1.00736 0.96587 0.97394 1.83763 1.54863 1.05882 1.03863 1.26672 1.01554 0.96683 1.04044 1.20456 1.04022 1.03158 0.92919 0.75952 0.87291 1.22628 1.17444 0.72342 0.91067 0.83535 0.76135 0.77092 0.82603 0.87710 0.77243 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -3.15 12.32 -148.36 -1.83 -4.98 16 2 C -0.13 -0.31 2.33 71.24 0.17 -0.14 16 3 Si 0.80 -2.44 30.47 68.60 2.09 -0.35 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 5 C -0.80 0.91 6.46 66.72 0.43 1.34 16 6 S 2.72 9.13 5.05 -56.49 -0.29 8.84 16 7 O -0.98 -9.44 17.48 -128.00 -2.24 -11.67 16 8 O -0.97 -10.61 16.97 -125.86 -2.14 -12.75 16 9 N -1.09 7.08 5.61 -167.19 -0.94 6.14 16 10 C 0.10 -0.89 3.44 45.51 0.16 -0.73 16 11 H 0.11 -0.71 6.62 -2.39 -0.02 -0.73 16 12 C -0.14 1.25 7.66 31.12 0.24 1.48 16 13 C 0.11 -0.96 5.11 45.58 0.23 -0.73 16 14 H 0.15 -1.78 8.14 -2.39 -0.02 -1.80 16 15 N -0.27 0.18 3.52 -324.39 -1.14 -0.96 16 16 C -0.04 0.13 9.68 83.49 0.81 0.94 16 17 C -0.06 -0.13 12.05 83.73 1.01 0.88 16 18 N -0.32 -3.31 12.41 -58.26 -0.72 -4.03 16 19 N -0.12 -0.98 13.16 37.02 0.49 -0.50 16 20 C -0.15 2.09 5.65 31.18 0.18 2.27 16 21 S 0.25 -2.44 19.63 -56.49 -1.11 -3.55 16 22 C -0.15 1.59 11.23 66.72 0.75 2.34 16 23 C -0.18 1.19 8.74 21.22 0.19 1.38 16 24 H 0.39 -0.77 8.70 -74.05 -0.64 -1.41 16 25 H 0.11 0.54 7.23 -2.38 -0.02 0.53 16 26 H -0.30 -1.53 7.11 99.48 0.71 -0.82 16 27 H -0.25 0.90 6.80 99.48 0.68 1.57 16 28 H 0.44 -5.06 8.93 -96.75 -0.86 -5.93 16 29 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.15 -2.12 8.14 -2.39 -0.02 -2.14 16 31 H 0.22 -2.52 6.74 -2.91 -0.02 -2.54 16 32 H 0.21 -0.87 8.06 -2.91 -0.02 -0.90 16 33 H 0.16 -3.03 8.14 -2.39 -0.02 -3.05 16 34 H 0.10 -1.64 5.60 -2.39 -0.01 -1.65 16 35 H 0.21 -3.56 8.06 -2.91 -0.02 -3.58 16 36 H 0.17 -1.79 5.54 -2.91 -0.02 -1.81 16 Total: 0.00 -35.32 326.04 -4.10 -39.43 By element: Atomic # 1 Polarization: -24.21 SS G_CDS: -0.33 Total: -24.54 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 4.05 Total: 8.92 kcal Atomic # 7 Polarization: 2.97 SS G_CDS: -2.31 Total: 0.65 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -6.20 Total: -29.40 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.09 Total: -0.35 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.39 Total: 5.30 kcal Total: -35.32 -4.10 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_13652106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.542 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds