Wall clock time and date at job start Mon Mar 8 2021 10:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86295 * 109.47363 * 2 1 4 4 C 1.50706 * 109.47546 * 239.99741 * 2 1 3 5 5 C 1.33383 * 125.20046 * 315.70287 * 4 2 1 6 6 S 1.76204 * 122.54158 * 0.02562 * 5 4 2 7 7 O 1.42098 * 106.39977 * 314.05855 * 6 5 4 8 8 O 1.42097 * 106.40161 * 181.13736 * 6 5 4 9 9 N 1.65600 * 107.21698 * 67.59834 * 6 5 4 10 10 C 1.46500 * 120.00055 * 62.75995 * 9 6 5 11 11 H 1.08999 * 112.85150 * 12.85144 * 10 9 6 12 12 C 1.53779 * 113.61481 * 144.04838 * 10 9 6 13 13 C 1.53782 * 87.08217 * 139.97949 * 12 10 9 14 14 H 1.08996 * 113.61043 * 219.93125 * 13 12 10 15 15 N 1.46500 * 113.61292 * 89.11713 * 13 12 10 16 16 C 1.35318 * 125.86373 * 274.92690 * 15 13 12 17 17 C 1.35355 * 106.17089 * 179.90644 * 16 15 13 18 18 N 1.33773 * 106.49700 * 0.35105 * 17 16 15 19 19 N 1.28631 * 108.88752 * 359.77679 * 18 17 16 20 20 C 1.53782 * 87.07965 * 334.56565 * 13 12 10 21 21 C 1.38423 * 114.92026 * 179.74943 * 5 4 2 22 22 C 1.33392 * 114.92099 * 0.25382 * 21 5 4 23 23 S 1.75882 * 109.59367 * 359.97438 * 22 21 5 24 24 H 0.96699 * 114.00395 * 300.00223 * 1 2 3 25 25 H 1.09001 * 109.47125 * 120.00084 * 2 1 3 26 26 H 1.48493 * 110.00334 * 299.99928 * 3 2 1 27 27 H 1.48507 * 110.00076 * 61.31636 * 3 2 1 28 28 H 0.97001 * 119.99606 * 242.47844 * 9 6 5 29 29 H 1.09002 * 113.61432 * 254.52644 * 12 10 9 30 30 H 1.08999 * 113.61618 * 25.34682 * 12 10 9 31 31 H 1.07993 * 126.91464 * 0.02562 * 16 15 13 32 32 H 1.07995 * 126.74937 * 180.11898 * 17 16 15 33 33 H 1.08998 * 113.61344 * 270.88172 * 20 13 12 34 34 H 1.09002 * 113.61223 * 139.97954 * 20 13 12 35 35 H 1.08005 * 122.54421 * 180.26949 * 21 5 4 36 36 H 1.07996 * 125.20383 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.4523 -1.8622 -1.7028 6 16 0.1289 -2.7281 -0.9258 7 8 0.4220 -2.7447 0.4646 8 8 -0.0822 -3.9075 -1.6897 9 7 -1.2337 -1.8043 -1.1055 10 6 -1.7554 -1.5213 -2.4449 11 1 -1.3032 -2.1452 -3.2158 12 6 -3.2911 -1.4765 -2.5110 13 6 -3.1368 -0.2782 -3.4624 14 1 -3.8648 0.5140 -3.2882 15 7 -3.0365 -0.6585 -4.8736 16 6 -1.9032 -1.0198 -5.5187 17 6 -2.2651 -1.2879 -6.7951 18 7 -3.5834 -1.0727 -6.8694 19 7 -4.0103 -0.7009 -5.7144 20 6 -1.7751 -0.0239 -2.7946 21 6 2.0694 -2.3226 -2.8531 22 6 3.0533 -1.5475 -3.3119 23 16 3.2411 -0.1492 -2.2616 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5616 2.4679 -1.2084 27 1 1.5878 2.4586 1.2242 28 1 -1.6887 -1.4540 -0.3237 29 1 -3.7337 -2.3541 -2.9824 30 1 -3.7619 -1.2237 -1.5610 31 1 -0.9102 -1.0835 -5.0991 32 1 -1.6165 -1.6085 -7.5969 33 1 -1.8314 0.6275 -1.9225 34 1 -0.9937 0.2712 -3.4949 35 1 1.7764 -3.2399 -3.3423 36 1 3.6437 -1.7474 -4.1938 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567558_14772022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:18 Heat of formation + Delta-G solvation = 85.539049 kcal Electronic energy + Delta-G solvation = -26878.127645 eV Core-core repulsion = 23008.310612 eV Total energy + Delta-G solvation = -3869.817033 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.049 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.28784 -40.63165 -39.67430 -38.36716 -37.65022 -36.80312 -35.19535 -32.90621 -32.11304 -31.95291 -27.63981 -27.23821 -26.50883 -24.42788 -23.54985 -23.26175 -21.88154 -21.18953 -20.14632 -19.22685 -18.76286 -18.57872 -18.37403 -17.97351 -17.56812 -16.95642 -16.46600 -16.16709 -16.04128 -15.62340 -15.24514 -15.19352 -14.86282 -14.48979 -14.33397 -14.32268 -13.97400 -13.89068 -13.81931 -13.15630 -13.11792 -12.99401 -12.85877 -12.78170 -12.69599 -12.52964 -12.33110 -12.04746 -11.79131 -11.73230 -11.11244 -10.99691 -10.59938 -10.32476 -10.21285 -9.86405 -5.37278 -0.71717 -0.53000 0.18578 0.49683 0.61459 0.85939 1.03356 1.23542 1.30848 1.59778 1.68680 1.99267 2.60349 2.74822 2.87825 3.00195 3.25630 3.29855 3.44934 3.48482 3.56196 3.76739 3.97503 4.04818 4.09713 4.17036 4.22195 4.26748 4.28106 4.33314 4.46294 4.57240 4.63061 4.76227 4.80449 4.95189 5.03410 5.22687 5.62088 5.90601 5.94143 7.59099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.066 4.066 3 Si 0.668 3.332 4 C -0.052 4.052 5 C -0.668 4.668 6 S 2.717 3.283 7 O -0.953 6.953 8 O -0.961 6.961 9 N -1.078 6.078 10 C 0.129 3.871 11 H 0.116 0.884 12 C -0.143 4.143 13 C 0.111 3.889 14 H 0.130 0.870 15 N -0.275 5.275 16 C -0.054 4.054 17 C -0.047 4.047 18 N -0.270 5.270 19 N -0.080 5.080 20 C -0.148 4.148 21 C -0.079 4.079 22 C -0.211 4.211 23 S 0.162 5.838 24 H 0.393 0.607 25 H 0.113 0.887 26 H -0.236 1.236 27 H -0.235 1.235 28 H 0.422 0.578 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.187 0.813 32 H 0.191 0.809 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 5.009 3.630 8.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.178 4.178 3 Si 0.564 3.436 4 C -0.172 4.172 5 C -0.767 4.767 6 S 2.803 3.197 7 O -0.943 6.943 8 O -0.951 6.951 9 N -0.837 5.837 10 C 0.021 3.979 11 H 0.134 0.866 12 C -0.184 4.184 13 C 0.008 3.992 14 H 0.148 0.852 15 N -0.069 5.069 16 C -0.205 4.205 17 C -0.204 4.204 18 N -0.135 5.135 19 N -0.059 5.059 20 C -0.188 4.188 21 C -0.107 4.107 22 C -0.347 4.347 23 S 0.426 5.574 24 H 0.244 0.756 25 H 0.130 0.870 26 H -0.160 1.160 27 H -0.158 1.158 28 H 0.259 0.741 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.204 0.796 32 H 0.208 0.792 33 H 0.141 0.859 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.674 6.139 3.117 8.321 hybrid contribution -0.377 -0.792 0.596 1.061 sum 4.296 5.346 3.714 7.800 Atomic orbital electron populations 1.86453 1.16685 1.80497 1.50751 1.24479 0.85352 1.11381 0.96548 0.94859 0.91477 0.74012 0.83222 1.23761 0.99027 0.96041 0.98401 1.29868 1.24847 1.10256 1.11751 1.01324 0.72503 0.72619 0.73224 1.93574 1.84035 1.86335 1.30344 1.93605 1.84966 1.43416 1.73071 1.55240 1.43535 1.72127 1.12791 1.22361 0.95118 0.95803 0.84661 0.86616 1.23778 0.96379 0.98145 1.00085 1.22408 1.01857 1.00048 0.74925 0.85207 1.47191 1.06073 1.43307 1.10324 1.23615 0.94243 1.08112 0.94517 1.23672 0.93325 1.06347 0.97029 1.75176 1.10618 1.14536 1.13200 1.78370 1.14298 1.18769 0.94498 1.23959 0.94610 0.98583 1.01643 1.19774 0.95697 1.01187 0.94079 1.25929 1.04503 0.99094 1.05126 1.84291 1.31628 1.23770 1.17722 0.75593 0.86957 1.15968 1.15765 0.74078 0.89230 0.86482 0.79565 0.79163 0.85940 0.89672 0.82422 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.52 8.21 -45.62 -0.37 2.14 16 2 C -0.07 0.21 2.08 36.01 0.07 0.29 16 3 Si 0.67 -2.53 31.10 -169.99 -5.29 -7.82 16 4 C -0.05 0.08 5.78 -36.00 -0.21 -0.13 16 5 C -0.67 0.20 5.73 -41.21 -0.24 -0.04 16 6 S 2.72 2.35 4.88 -107.50 -0.52 1.83 16 7 O -0.95 -2.99 16.55 -62.67 -1.04 -4.02 16 8 O -0.96 -3.95 16.97 -57.17 -0.97 -4.92 16 9 N -1.08 2.94 3.93 -4.20 -0.02 2.92 16 10 C 0.13 -0.39 3.98 -67.12 -0.27 -0.66 16 11 H 0.12 -0.27 6.69 -51.93 -0.35 -0.62 16 12 C -0.14 0.46 7.67 -25.92 -0.20 0.26 16 13 C 0.11 -0.29 5.11 -67.12 -0.34 -0.63 16 14 H 0.13 -0.46 8.14 -51.93 -0.42 -0.88 16 15 N -0.27 -0.21 3.52 -53.97 -0.19 -0.40 16 16 C -0.05 0.02 9.68 -17.04 -0.17 -0.15 16 17 C -0.05 -0.07 12.05 -17.73 -0.21 -0.29 16 18 N -0.27 -1.41 12.41 30.23 0.38 -1.03 16 19 N -0.08 -0.36 13.17 60.35 0.79 0.43 16 20 C -0.15 0.63 7.13 -25.92 -0.18 0.44 16 21 C -0.08 0.07 9.69 -41.21 -0.40 -0.33 16 22 C -0.21 0.46 11.23 29.04 0.33 0.79 16 23 S 0.16 -0.41 20.75 -107.50 -2.23 -2.64 16 24 H 0.39 -3.30 8.74 45.56 0.40 -2.90 16 25 H 0.11 -0.38 7.83 -51.93 -0.41 -0.79 16 26 H -0.24 0.33 7.11 56.52 0.40 0.73 16 27 H -0.23 0.53 7.11 56.52 0.40 0.93 16 28 H 0.42 -2.06 7.96 -34.47 -0.27 -2.33 16 29 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 30 H 0.12 -0.62 8.14 -51.93 -0.42 -1.05 16 31 H 0.19 -0.68 6.74 -52.49 -0.35 -1.03 16 32 H 0.19 -0.30 8.06 -52.49 -0.42 -0.72 16 33 H 0.12 -0.69 8.14 -51.93 -0.42 -1.12 16 34 H 0.08 -0.34 6.98 -51.93 -0.36 -0.70 16 35 H 0.16 -0.21 7.74 -52.48 -0.41 -0.62 16 36 H 0.18 -0.77 8.06 -52.49 -0.42 -1.19 16 LS Contribution 327.19 15.07 4.93 4.93 Total: 0.00 -12.05 327.19 -9.83 -21.88 By element: Atomic # 1 Polarization: -9.37 SS G_CDS: -3.49 Total: -12.85 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.81 Total: -0.45 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: 0.96 Total: 1.92 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -2.38 Total: -6.80 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: -5.29 Total: -7.82 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.75 Total: -0.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -12.05 -9.83 -21.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_14772022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.415 kcal (2) G-P(sol) polarization free energy of solvation -12.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds