Wall clock time and date at job start Mon Mar 8 2021 10:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86295 * 109.47363 * 2 1 4 4 C 1.50706 * 109.47546 * 239.99741 * 2 1 3 5 5 C 1.33383 * 125.20046 * 315.70287 * 4 2 1 6 6 S 1.76204 * 122.54158 * 0.02562 * 5 4 2 7 7 O 1.42098 * 106.39977 * 314.05855 * 6 5 4 8 8 O 1.42097 * 106.40161 * 181.13736 * 6 5 4 9 9 N 1.65600 * 107.21698 * 67.59834 * 6 5 4 10 10 C 1.46500 * 120.00055 * 62.75995 * 9 6 5 11 11 H 1.08999 * 112.85150 * 12.85144 * 10 9 6 12 12 C 1.53779 * 113.61481 * 144.04838 * 10 9 6 13 13 C 1.53782 * 87.08217 * 139.97949 * 12 10 9 14 14 H 1.08996 * 113.61043 * 219.93125 * 13 12 10 15 15 N 1.46500 * 113.61292 * 89.11713 * 13 12 10 16 16 C 1.35318 * 125.86373 * 274.92690 * 15 13 12 17 17 C 1.35355 * 106.17089 * 179.90644 * 16 15 13 18 18 N 1.33773 * 106.49700 * 0.35105 * 17 16 15 19 19 N 1.28631 * 108.88752 * 359.77679 * 18 17 16 20 20 C 1.53782 * 87.07965 * 334.56565 * 13 12 10 21 21 C 1.38423 * 114.92026 * 179.74943 * 5 4 2 22 22 C 1.33392 * 114.92099 * 0.25382 * 21 5 4 23 23 S 1.75882 * 109.59367 * 359.97438 * 22 21 5 24 24 H 0.96699 * 114.00395 * 300.00223 * 1 2 3 25 25 H 1.09001 * 109.47125 * 120.00084 * 2 1 3 26 26 H 1.48493 * 110.00334 * 299.99928 * 3 2 1 27 27 H 1.48507 * 110.00076 * 61.31636 * 3 2 1 28 28 H 0.97001 * 119.99606 * 242.47844 * 9 6 5 29 29 H 1.09002 * 113.61432 * 254.52644 * 12 10 9 30 30 H 1.08999 * 113.61618 * 25.34682 * 12 10 9 31 31 H 1.07993 * 126.91464 * 0.02562 * 16 15 13 32 32 H 1.07995 * 126.74937 * 180.11898 * 17 16 15 33 33 H 1.08998 * 113.61344 * 270.88172 * 20 13 12 34 34 H 1.09002 * 113.61223 * 139.97954 * 20 13 12 35 35 H 1.08005 * 122.54421 * 180.26949 * 21 5 4 36 36 H 1.07996 * 125.20383 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.4523 -1.8622 -1.7028 6 16 0.1289 -2.7281 -0.9258 7 8 0.4220 -2.7447 0.4646 8 8 -0.0822 -3.9075 -1.6897 9 7 -1.2337 -1.8043 -1.1055 10 6 -1.7554 -1.5213 -2.4449 11 1 -1.3032 -2.1452 -3.2158 12 6 -3.2911 -1.4765 -2.5110 13 6 -3.1368 -0.2782 -3.4624 14 1 -3.8648 0.5140 -3.2882 15 7 -3.0365 -0.6585 -4.8736 16 6 -1.9032 -1.0198 -5.5187 17 6 -2.2651 -1.2879 -6.7951 18 7 -3.5834 -1.0727 -6.8694 19 7 -4.0103 -0.7009 -5.7144 20 6 -1.7751 -0.0239 -2.7946 21 6 2.0694 -2.3226 -2.8531 22 6 3.0533 -1.5475 -3.3119 23 16 3.2411 -0.1492 -2.2616 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5616 2.4679 -1.2084 27 1 1.5878 2.4586 1.2242 28 1 -1.6887 -1.4540 -0.3237 29 1 -3.7337 -2.3541 -2.9824 30 1 -3.7619 -1.2237 -1.5610 31 1 -0.9102 -1.0835 -5.0991 32 1 -1.6165 -1.6085 -7.5969 33 1 -1.8314 0.6275 -1.9225 34 1 -0.9937 0.2712 -3.4949 35 1 1.7764 -3.2399 -3.3423 36 1 3.6437 -1.7474 -4.1938 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567558_14772022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:17 Heat of formation + Delta-G solvation = 79.917920 kcal Electronic energy + Delta-G solvation = -26878.371396 eV Core-core repulsion = 23008.310612 eV Total energy + Delta-G solvation = -3870.060783 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.049 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.35025 -40.45263 -39.46568 -38.40360 -37.44579 -36.94729 -35.14159 -32.87150 -32.01677 -31.89581 -27.44318 -26.97331 -26.41125 -24.23327 -23.61434 -23.22448 -21.77278 -21.09175 -20.09366 -18.99666 -18.61471 -18.43782 -18.22940 -17.82388 -17.48944 -16.94479 -16.28340 -16.08866 -16.02036 -15.54331 -15.15715 -14.95579 -14.78186 -14.31381 -14.21030 -14.11128 -13.81590 -13.62924 -13.57416 -13.27822 -13.16404 -12.89248 -12.82358 -12.75640 -12.65953 -12.41275 -12.17868 -12.00891 -11.68273 -11.65225 -11.01633 -10.82276 -10.40662 -10.39453 -10.02932 -9.66403 -5.05200 -0.65817 -0.41298 0.38043 0.57306 0.69714 1.10837 1.18977 1.33615 1.56261 1.58752 1.86670 2.08207 2.70234 2.95947 3.14346 3.21310 3.41060 3.53631 3.58492 3.60920 3.77382 3.97768 4.09372 4.20744 4.25300 4.33354 4.39072 4.45865 4.49471 4.62478 4.70817 4.76562 4.83546 4.86343 4.98910 5.16896 5.18948 5.21567 5.67294 6.22278 6.50586 7.46814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.073 4.073 3 Si 0.727 3.273 4 C -0.059 4.059 5 C -0.678 4.678 6 S 2.725 3.275 7 O -0.981 6.981 8 O -1.001 7.001 9 N -1.064 6.064 10 C 0.124 3.876 11 H 0.108 0.892 12 C -0.139 4.139 13 C 0.100 3.900 14 H 0.141 0.859 15 N -0.269 5.269 16 C -0.043 4.043 17 C -0.062 4.062 18 N -0.315 5.315 19 N -0.120 5.120 20 C -0.131 4.131 21 C -0.098 4.098 22 C -0.210 4.210 23 S 0.189 5.811 24 H 0.410 0.590 25 H 0.115 0.885 26 H -0.265 1.265 27 H -0.255 1.255 28 H 0.433 0.567 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.220 0.780 32 H 0.214 0.786 33 H 0.144 0.856 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 6.301 4.400 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.183 4.183 3 Si 0.626 3.374 4 C -0.180 4.180 5 C -0.780 4.780 6 S 2.815 3.185 7 O -0.971 6.971 8 O -0.991 6.991 9 N -0.826 5.826 10 C 0.015 3.985 11 H 0.125 0.875 12 C -0.179 4.179 13 C -0.002 4.002 14 H 0.159 0.841 15 N -0.063 5.063 16 C -0.194 4.194 17 C -0.219 4.219 18 N -0.180 5.180 19 N -0.099 5.099 20 C -0.171 4.171 21 C -0.126 4.126 22 C -0.345 4.345 23 S 0.453 5.547 24 H 0.264 0.736 25 H 0.132 0.868 26 H -0.190 1.190 27 H -0.179 1.179 28 H 0.273 0.727 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.237 0.763 32 H 0.231 0.769 33 H 0.162 0.838 34 H 0.107 0.893 35 H 0.173 0.827 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.785 7.414 3.930 10.192 hybrid contribution -0.691 -1.147 0.391 1.395 sum 5.094 6.267 4.320 9.159 Atomic orbital electron populations 1.86400 1.15870 1.80868 1.51960 1.24608 0.86190 1.11643 0.95895 0.94063 0.90788 0.72125 0.80405 1.24069 0.99217 0.95830 0.98896 1.29612 1.25053 1.10868 1.12418 1.00648 0.73109 0.72502 0.72279 1.93528 1.84738 1.86927 1.31919 1.93554 1.85767 1.46141 1.73663 1.54899 1.42518 1.71686 1.13523 1.22442 0.95111 0.96792 0.84142 0.87460 1.23834 0.96204 0.97083 1.00828 1.22738 1.03457 1.00630 0.73405 0.84098 1.47479 1.05742 1.41999 1.11092 1.24135 0.95144 1.06212 0.93904 1.24212 0.92575 1.06477 0.98683 1.75100 1.12636 1.16109 1.14172 1.78276 1.15746 1.20773 0.95074 1.23951 0.93422 0.97688 1.02056 1.19842 0.96633 1.01690 0.94446 1.26228 1.03920 0.98778 1.05597 1.84215 1.30575 1.23057 1.16890 0.73621 0.86758 1.19042 1.17928 0.72697 0.91313 0.84006 0.76322 0.76930 0.83822 0.89307 0.82727 0.78595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 5.78 8.21 -139.05 -1.14 4.64 16 2 C -0.07 0.53 2.08 71.24 0.15 0.68 16 3 Si 0.73 -6.30 31.10 68.60 2.13 -4.16 16 4 C -0.06 0.22 5.78 24.59 0.14 0.36 16 5 C -0.68 0.49 5.73 21.21 0.12 0.61 16 6 S 2.73 6.19 4.88 -56.49 -0.28 5.91 16 7 O -0.98 -6.71 16.55 -122.74 -2.03 -8.74 16 8 O -1.00 -9.68 16.97 -128.00 -2.17 -11.85 16 9 N -1.06 6.27 3.93 -167.20 -0.66 5.61 16 10 C 0.12 -0.82 3.98 45.52 0.18 -0.64 16 11 H 0.11 -0.50 6.69 -2.39 -0.02 -0.52 16 12 C -0.14 0.95 7.67 31.12 0.24 1.19 16 13 C 0.10 -0.59 5.11 45.52 0.23 -0.35 16 14 H 0.14 -1.13 8.14 -2.39 -0.02 -1.15 16 15 N -0.27 -0.50 3.52 -324.67 -1.14 -1.64 16 16 C -0.04 0.03 9.68 83.49 0.81 0.84 16 17 C -0.06 -0.23 12.05 83.73 1.01 0.78 16 18 N -0.32 -3.82 12.41 -58.26 -0.72 -4.54 16 19 N -0.12 -1.25 13.17 37.02 0.49 -0.76 16 20 C -0.13 1.33 7.13 31.12 0.22 1.55 16 21 C -0.10 0.17 9.69 21.22 0.21 0.38 16 22 C -0.21 1.13 11.23 66.72 0.75 1.88 16 23 S 0.19 -1.20 20.75 -56.49 -1.17 -2.37 16 24 H 0.41 -7.56 8.74 -74.06 -0.65 -8.21 16 25 H 0.11 -0.86 7.83 -2.39 -0.02 -0.88 16 26 H -0.27 0.99 7.11 99.48 0.71 1.70 16 27 H -0.26 1.36 7.11 99.48 0.71 2.06 16 28 H 0.43 -4.65 7.96 -96.75 -0.77 -5.42 16 29 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.14 -1.72 8.14 -2.39 -0.02 -1.74 16 31 H 0.22 -1.89 6.74 -2.91 -0.02 -1.91 16 32 H 0.21 -0.63 8.06 -2.91 -0.02 -0.66 16 33 H 0.14 -2.02 8.14 -2.39 -0.02 -2.03 16 34 H 0.09 -0.89 6.98 -2.39 -0.02 -0.91 16 35 H 0.16 -0.28 7.74 -2.91 -0.02 -0.31 16 36 H 0.20 -2.02 8.06 -2.91 -0.02 -2.04 16 Total: 0.00 -29.91 327.19 -2.86 -32.77 By element: Atomic # 1 Polarization: -21.93 SS G_CDS: -0.22 Total: -22.16 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 4.06 Total: 7.28 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -2.04 Total: -1.33 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -5.35 Total: -15.95 kcal Atomic # 14 Polarization: -6.30 SS G_CDS: 2.13 Total: -4.16 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.45 Total: 3.54 kcal Total: -29.91 -2.86 -32.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_14772022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.686 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds