Wall clock time and date at job start Mon Mar 8 2021 10:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47335 * 2 1 4 4 C 1.50696 * 109.47130 * 120.00502 * 2 1 3 5 5 C 1.33393 * 125.20547 * 64.99810 * 4 2 1 6 6 C 1.38429 * 114.92134 * 180.02562 * 5 4 2 7 7 S 1.76196 * 122.53911 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40349 * 336.46162 * 7 6 5 9 9 O 1.42103 * 106.40139 * 203.53965 * 7 6 5 10 10 N 1.65599 * 107.21437 * 90.00337 * 7 6 5 11 11 C 1.46497 * 120.00411 * 64.99875 * 10 7 6 12 12 H 1.09002 * 112.90477 * 346.25028 * 11 10 7 13 13 C 1.53779 * 113.61581 * 117.50201 * 11 10 7 14 14 C 1.53779 * 87.08402 * 139.98450 * 13 11 10 15 15 H 1.08997 * 113.61646 * 220.02209 * 14 13 11 16 16 N 1.46499 * 113.61746 * 89.11614 * 14 13 11 17 17 C 1.35310 * 125.86504 * 347.21637 * 16 14 13 18 18 C 1.35348 * 106.17287 * 179.90570 * 17 16 14 19 19 N 1.33767 * 106.49763 * 0.35426 * 18 17 16 20 20 N 1.28627 * 108.88473 * 359.77567 * 19 18 17 21 21 C 1.53784 * 113.61569 * 214.99981 * 11 10 7 22 22 C 1.33388 * 114.92026 * 0.24899 * 6 5 4 23 23 S 1.75882 * 125.20266 * 245.03953 * 4 2 1 24 24 H 0.96694 * 114.00187 * 299.99834 * 1 2 3 25 25 H 1.09006 * 109.46791 * 239.99998 * 2 1 3 26 26 H 1.48499 * 109.99772 * 178.68025 * 3 2 1 27 27 H 1.48501 * 109.99823 * 300.00126 * 3 2 1 28 28 H 1.07996 * 122.54150 * 0.05391 * 5 4 2 29 29 H 0.97009 * 120.00161 * 244.99747 * 10 7 6 30 30 H 1.09006 * 113.61307 * 25.43652 * 13 11 10 31 31 H 1.08999 * 113.69146 * 254.54138 * 13 11 10 32 32 H 1.07999 * 126.91308 * 0.02562 * 17 16 14 33 33 H 1.08007 * 126.75334 * 180.12881 * 18 17 16 34 34 H 1.09004 * 113.61451 * 105.47149 * 21 11 10 35 35 H 1.08994 * 113.61477 * 334.56451 * 21 11 10 36 36 H 1.07999 * 125.20719 * 179.75780 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7533 -2.0053 1.4972 6 6 2.3053 -2.4360 2.6914 7 16 2.1890 -4.1058 3.2416 8 8 1.0535 -4.6633 2.5944 9 8 2.3410 -4.0744 4.6541 10 7 3.5083 -4.9108 2.6470 11 6 4.8537 -4.5448 3.0966 12 1 4.8796 -3.5923 3.6261 13 6 5.5872 -5.6787 3.8322 14 6 6.8562 -5.2367 3.0844 15 1 7.4718 -6.0677 2.7400 16 7 7.6269 -4.2110 3.7916 17 6 7.1998 -3.4907 4.8545 18 6 8.2220 -2.6686 5.1880 19 7 9.2084 -2.9173 4.3194 20 7 8.8244 -3.8360 3.5051 21 6 5.9248 -4.6694 2.0002 22 6 2.9271 -1.4898 3.3967 23 16 2.8411 0.0409 2.5347 24 1 -0.3933 0.4416 0.7650 25 1 1.7923 -0.5139 -0.8900 26 1 3.5346 1.7701 0.0321 27 1 1.5615 2.4678 -1.2085 28 1 1.2194 -2.6675 0.8319 29 1 3.3904 -5.6248 2.0010 30 1 5.2414 -6.6745 3.5547 31 1 5.6442 -5.5358 4.9112 32 1 6.2377 -3.5594 5.3403 33 1 8.2369 -1.9502 5.9944 34 1 6.2539 -3.7102 1.6002 35 1 5.6714 -5.3892 1.2220 36 1 3.4110 -1.6409 4.3503 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567558_15065232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:22 Heat of formation + Delta-G solvation = 76.272596 kcal Electronic energy + Delta-G solvation = -25635.826567 eV Core-core repulsion = 21765.607711 eV Total energy + Delta-G solvation = -3870.218856 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.049 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.38666 -40.79453 -39.62050 -38.37488 -37.66881 -37.01800 -35.43274 -33.08958 -32.04593 -31.98051 -27.41530 -27.36549 -26.66115 -25.07035 -23.66131 -23.41350 -21.68072 -21.27980 -20.46456 -19.34637 -18.74225 -18.67384 -18.04565 -17.90611 -17.67883 -17.16359 -16.45701 -16.30308 -16.04052 -15.75693 -15.56460 -15.14146 -14.98712 -14.60911 -14.40951 -14.29888 -14.18777 -14.05191 -14.02904 -13.31128 -13.20753 -13.09703 -13.02409 -12.83315 -12.66554 -12.59431 -12.32566 -12.18722 -11.84912 -11.76998 -11.10762 -10.96365 -10.77023 -10.41602 -10.35154 -10.00629 -5.34252 -0.94134 -0.64263 0.16772 0.44165 0.51839 0.84580 1.03203 1.13301 1.41311 1.60160 1.73415 1.78530 2.48933 2.63330 2.82368 3.06415 3.11924 3.23278 3.27995 3.42893 3.46940 3.61267 3.64924 3.92433 4.01088 4.05065 4.13868 4.15229 4.22078 4.22786 4.33278 4.42214 4.48298 4.64622 4.74071 4.76413 4.92297 5.14482 5.52166 5.55617 6.31977 7.50494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.027 4.027 3 Si 0.655 3.345 4 C -0.228 4.228 5 C -0.043 4.043 6 C -0.687 4.687 7 S 2.706 3.294 8 O -0.946 6.946 9 O -0.949 6.949 10 N -1.100 6.100 11 C 0.125 3.875 12 H 0.115 0.885 13 C -0.151 4.151 14 C 0.113 3.887 15 H 0.134 0.866 16 N -0.277 5.277 17 C -0.058 4.058 18 C -0.046 4.046 19 N -0.269 5.269 20 N -0.079 5.079 21 C -0.147 4.147 22 C -0.092 4.092 23 S 0.166 5.834 24 H 0.382 0.618 25 H 0.126 0.874 26 H -0.238 1.238 27 H -0.230 1.230 28 H 0.157 0.843 29 H 0.424 0.576 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.191 0.809 33 H 0.192 0.808 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 0.762 0.671 1.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.141 4.141 3 Si 0.555 3.445 4 C -0.346 4.346 5 C -0.071 4.071 6 C -0.787 4.787 7 S 2.792 3.208 8 O -0.937 6.937 9 O -0.938 6.938 10 N -0.859 5.859 11 C 0.017 3.983 12 H 0.132 0.868 13 C -0.191 4.191 14 C 0.009 3.991 15 H 0.152 0.848 16 N -0.071 5.071 17 C -0.208 4.208 18 C -0.203 4.203 19 N -0.135 5.135 20 N -0.058 5.058 21 C -0.187 4.187 22 C -0.231 4.231 23 S 0.430 5.570 24 H 0.230 0.770 25 H 0.143 0.857 26 H -0.162 1.162 27 H -0.153 1.153 28 H 0.175 0.825 29 H 0.260 0.740 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.208 0.792 33 H 0.209 0.791 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.330 2.164 -0.360 2.218 hybrid contribution -1.176 -1.548 -0.229 1.958 sum -0.846 0.615 -0.589 1.200 Atomic orbital electron populations 1.86551 1.16315 1.81667 1.49185 1.24456 0.85454 1.09178 0.94965 0.95073 0.82065 0.77328 0.90082 1.25108 1.08625 0.98358 1.02465 1.19601 0.97634 0.95229 0.94674 1.30012 1.15685 1.25867 1.07125 1.01766 0.72374 0.72823 0.73795 1.93635 1.46868 1.76620 1.76531 1.93623 1.85756 1.86524 1.27941 1.55559 1.19583 1.50023 1.60717 1.22438 0.80973 0.98644 0.96266 0.86758 1.23965 0.91869 1.01374 1.01900 1.22373 0.92471 0.89640 0.94587 0.84844 1.47198 1.11466 1.26833 1.21558 1.23699 1.03740 0.98679 0.94711 1.23700 0.90537 1.03438 1.02624 1.75190 1.25222 1.09531 1.03520 1.78387 0.95285 1.11243 1.20925 1.23845 0.93747 1.04055 0.97055 1.25925 0.98729 0.96132 1.02282 1.84408 1.50211 1.10672 1.11714 0.77027 0.85657 1.16200 1.15267 0.82519 0.73971 0.85920 0.88624 0.79206 0.79087 0.89282 0.86244 0.79792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.34 12.88 -35.23 -0.45 -0.12 16 2 C -0.03 0.04 2.96 36.00 0.11 0.14 16 3 Si 0.66 -1.27 30.98 -169.99 -5.27 -6.53 16 4 C -0.23 0.24 5.70 -36.00 -0.21 0.04 16 5 C -0.04 0.02 9.59 -41.20 -0.40 -0.38 16 6 C -0.69 0.77 5.86 -41.21 -0.24 0.53 16 7 S 2.71 -2.06 5.74 -107.50 -0.62 -2.68 16 8 O -0.95 -2.56 17.63 -57.17 -1.01 -3.57 16 9 O -0.95 -1.40 17.39 -57.17 -0.99 -2.40 16 10 N -1.10 4.65 5.79 -4.20 -0.02 4.63 16 11 C 0.13 -0.59 3.93 -67.12 -0.26 -0.86 16 12 H 0.11 -0.60 6.77 -51.93 -0.35 -0.95 16 13 C -0.15 0.79 7.13 -25.92 -0.18 0.61 16 14 C 0.11 -0.44 5.11 -67.12 -0.34 -0.78 16 15 H 0.13 -0.63 8.14 -51.93 -0.42 -1.05 16 16 N -0.28 0.15 3.52 -53.97 -0.19 -0.04 16 17 C -0.06 0.10 9.68 -17.05 -0.17 -0.07 16 18 C -0.05 -0.01 12.05 -17.74 -0.21 -0.23 16 19 N -0.27 -1.10 12.41 30.24 0.38 -0.72 16 20 N -0.08 -0.26 13.16 60.35 0.79 0.53 16 21 C -0.15 0.73 7.67 -25.91 -0.20 0.53 16 22 C -0.09 0.21 10.60 29.04 0.31 0.51 16 23 S 0.17 -0.37 20.60 -107.50 -2.21 -2.58 16 24 H 0.38 -1.68 8.70 45.56 0.40 -1.28 16 25 H 0.13 -0.18 7.96 -51.93 -0.41 -0.60 16 26 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 27 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 28 H 0.16 -0.07 7.96 -52.49 -0.42 -0.49 16 29 H 0.42 -2.60 8.94 -34.47 -0.31 -2.91 16 30 H 0.12 -0.82 8.14 -51.93 -0.42 -1.25 16 31 H 0.10 -0.49 7.00 -51.93 -0.36 -0.85 16 32 H 0.19 -0.98 6.73 -52.49 -0.35 -1.33 16 33 H 0.19 -0.53 8.06 -52.48 -0.42 -0.95 16 34 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 35 H 0.12 -0.81 8.14 -51.93 -0.42 -1.23 16 36 H 0.18 -0.85 8.00 -52.49 -0.42 -1.27 16 LS Contribution 337.29 15.07 5.08 5.08 Total: 0.00 -12.80 337.29 -9.85 -22.66 By element: Atomic # 1 Polarization: -10.77 SS G_CDS: -3.54 Total: -14.31 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.80 Total: 0.05 kcal Atomic # 7 Polarization: 3.44 SS G_CDS: 0.96 Total: 4.40 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -2.46 Total: -6.08 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: -5.27 Total: -6.53 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.83 Total: -5.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -12.80 -9.85 -22.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_15065232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.931 kcal (2) G-P(sol) polarization free energy of solvation -12.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds