Wall clock time and date at job start Mon Mar 8 2021 10:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47335 * 2 1 4 4 C 1.50696 * 109.47130 * 120.00502 * 2 1 3 5 5 C 1.33393 * 125.20547 * 64.99810 * 4 2 1 6 6 C 1.38429 * 114.92134 * 180.02562 * 5 4 2 7 7 S 1.76196 * 122.53911 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40349 * 336.46162 * 7 6 5 9 9 O 1.42103 * 106.40139 * 203.53965 * 7 6 5 10 10 N 1.65599 * 107.21437 * 90.00337 * 7 6 5 11 11 C 1.46497 * 120.00411 * 64.99875 * 10 7 6 12 12 H 1.09002 * 112.90477 * 346.25028 * 11 10 7 13 13 C 1.53779 * 113.61581 * 117.50201 * 11 10 7 14 14 C 1.53779 * 87.08402 * 139.98450 * 13 11 10 15 15 H 1.08997 * 113.61646 * 220.02209 * 14 13 11 16 16 N 1.46499 * 113.61746 * 89.11614 * 14 13 11 17 17 C 1.35310 * 125.86504 * 347.21637 * 16 14 13 18 18 C 1.35348 * 106.17287 * 179.90570 * 17 16 14 19 19 N 1.33767 * 106.49763 * 0.35426 * 18 17 16 20 20 N 1.28627 * 108.88473 * 359.77567 * 19 18 17 21 21 C 1.53784 * 113.61569 * 214.99981 * 11 10 7 22 22 C 1.33388 * 114.92026 * 0.24899 * 6 5 4 23 23 S 1.75882 * 125.20266 * 245.03953 * 4 2 1 24 24 H 0.96694 * 114.00187 * 299.99834 * 1 2 3 25 25 H 1.09006 * 109.46791 * 239.99998 * 2 1 3 26 26 H 1.48499 * 109.99772 * 178.68025 * 3 2 1 27 27 H 1.48501 * 109.99823 * 300.00126 * 3 2 1 28 28 H 1.07996 * 122.54150 * 0.05391 * 5 4 2 29 29 H 0.97009 * 120.00161 * 244.99747 * 10 7 6 30 30 H 1.09006 * 113.61307 * 25.43652 * 13 11 10 31 31 H 1.08999 * 113.69146 * 254.54138 * 13 11 10 32 32 H 1.07999 * 126.91308 * 0.02562 * 17 16 14 33 33 H 1.08007 * 126.75334 * 180.12881 * 18 17 16 34 34 H 1.09004 * 113.61451 * 105.47149 * 21 11 10 35 35 H 1.08994 * 113.61477 * 334.56451 * 21 11 10 36 36 H 1.07999 * 125.20719 * 179.75780 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7533 -2.0053 1.4972 6 6 2.3053 -2.4360 2.6914 7 16 2.1890 -4.1058 3.2416 8 8 1.0535 -4.6633 2.5944 9 8 2.3410 -4.0744 4.6541 10 7 3.5083 -4.9108 2.6470 11 6 4.8537 -4.5448 3.0966 12 1 4.8796 -3.5923 3.6261 13 6 5.5872 -5.6787 3.8322 14 6 6.8562 -5.2367 3.0844 15 1 7.4718 -6.0677 2.7400 16 7 7.6269 -4.2110 3.7916 17 6 7.1998 -3.4907 4.8545 18 6 8.2220 -2.6686 5.1880 19 7 9.2084 -2.9173 4.3194 20 7 8.8244 -3.8360 3.5051 21 6 5.9248 -4.6694 2.0002 22 6 2.9271 -1.4898 3.3967 23 16 2.8411 0.0409 2.5347 24 1 -0.3933 0.4416 0.7650 25 1 1.7923 -0.5139 -0.8900 26 1 3.5346 1.7701 0.0321 27 1 1.5615 2.4678 -1.2085 28 1 1.2194 -2.6675 0.8319 29 1 3.3904 -5.6248 2.0010 30 1 5.2414 -6.6745 3.5547 31 1 5.6442 -5.5358 4.9112 32 1 6.2377 -3.5594 5.3403 33 1 8.2369 -1.9502 5.9944 34 1 6.2539 -3.7102 1.6002 35 1 5.6714 -5.3892 1.2220 36 1 3.4110 -1.6409 4.3503 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567558_15065232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:22 Heat of formation + Delta-G solvation = 68.455368 kcal Electronic energy + Delta-G solvation = -25636.165547 eV Core-core repulsion = 21765.607711 eV Total energy + Delta-G solvation = -3870.557837 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.049 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.32803 -40.48487 -39.49860 -38.39933 -37.56500 -37.04773 -35.24892 -32.93930 -31.98645 -31.85826 -27.24389 -27.00759 -26.43341 -24.94911 -23.59988 -23.25110 -21.54741 -21.08087 -20.31608 -19.19257 -18.63770 -18.44454 -17.90159 -17.70111 -17.53832 -17.07024 -16.35395 -16.17087 -15.94695 -15.56088 -15.46013 -14.99916 -14.78913 -14.41721 -14.28707 -14.07230 -14.03092 -13.96550 -13.61177 -13.36113 -13.25770 -12.95853 -12.90063 -12.74022 -12.58669 -12.44355 -12.23623 -11.99193 -11.73831 -11.62848 -11.00777 -10.73097 -10.58535 -10.37423 -10.21526 -9.85466 -5.22362 -0.82460 -0.50084 0.32054 0.57498 0.60355 0.94238 1.14915 1.35338 1.50463 1.59811 1.81250 1.96703 2.62909 2.95402 3.15939 3.21393 3.39281 3.47426 3.62425 3.63042 3.70413 3.87028 3.93211 4.13137 4.20472 4.28319 4.34140 4.37118 4.45849 4.61368 4.61473 4.71410 4.82533 4.87346 4.88456 5.02307 5.10947 5.24967 5.69467 5.96278 6.60840 7.50329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.032 4.032 3 Si 0.729 3.271 4 C -0.237 4.237 5 C -0.056 4.056 6 C -0.695 4.695 7 S 2.724 3.276 8 O -0.986 6.986 9 O -0.971 6.971 10 N -1.087 6.087 11 C 0.118 3.882 12 H 0.121 0.879 13 C -0.142 4.142 14 C 0.100 3.900 15 H 0.141 0.859 16 N -0.270 5.270 17 C -0.043 4.043 18 C -0.061 4.061 19 N -0.317 5.317 20 N -0.122 5.122 21 C -0.139 4.139 22 C -0.089 4.089 23 S 0.187 5.813 24 H 0.397 0.603 25 H 0.123 0.877 26 H -0.263 1.263 27 H -0.270 1.270 28 H 0.150 0.850 29 H 0.434 0.566 30 H 0.141 0.859 31 H 0.099 0.901 32 H 0.227 0.773 33 H 0.214 0.786 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 0.477 1.544 2.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.145 4.145 3 Si 0.631 3.369 4 C -0.355 4.355 5 C -0.085 4.085 6 C -0.795 4.795 7 S 2.812 3.188 8 O -0.976 6.976 9 O -0.961 6.961 10 N -0.848 5.848 11 C 0.010 3.990 12 H 0.139 0.861 13 C -0.183 4.183 14 C -0.002 4.002 15 H 0.158 0.842 16 N -0.064 5.064 17 C -0.195 4.195 18 C -0.219 4.219 19 N -0.181 5.181 20 N -0.100 5.100 21 C -0.180 4.180 22 C -0.228 4.228 23 S 0.451 5.549 24 H 0.247 0.753 25 H 0.140 0.860 26 H -0.188 1.188 27 H -0.195 1.195 28 H 0.168 0.832 29 H 0.273 0.727 30 H 0.159 0.841 31 H 0.118 0.882 32 H 0.243 0.757 33 H 0.231 0.769 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.099 1.843 0.511 1.915 hybrid contribution -1.061 -1.444 -0.522 1.866 sum -1.160 0.399 -0.011 1.227 Atomic orbital electron populations 1.86511 1.16691 1.82118 1.50391 1.24564 0.85310 1.09635 0.94975 0.94210 0.79365 0.75262 0.88049 1.25173 1.08931 0.98407 1.02942 1.19662 0.98150 0.95544 0.95145 1.29873 1.16611 1.25827 1.07221 1.00943 0.72138 0.72669 0.73042 1.93581 1.49341 1.77590 1.77122 1.93589 1.86197 1.86922 1.29391 1.55238 1.18924 1.49811 1.60854 1.22632 0.80311 0.99409 0.96635 0.86119 1.24024 0.90287 1.02024 1.01933 1.22690 0.92857 0.89326 0.95339 0.84156 1.47476 1.10685 1.26711 1.21524 1.24248 1.04399 0.97106 0.93706 1.24234 0.90395 1.04427 1.02863 1.75114 1.27307 1.10739 1.04987 1.78299 0.97247 1.12419 1.22068 1.23866 0.92994 1.03878 0.97228 1.26299 0.97908 0.95712 1.02898 1.84336 1.49427 1.10303 1.10846 0.75288 0.85973 1.18833 1.19543 0.83212 0.72725 0.84069 0.88232 0.75662 0.76928 0.90671 0.84217 0.77337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.52 12.88 -148.98 -1.92 -1.40 16 2 C -0.03 0.08 2.96 71.23 0.21 0.29 16 3 Si 0.73 -2.59 30.98 68.60 2.13 -0.46 16 4 C -0.24 0.51 5.70 24.59 0.14 0.65 16 5 C -0.06 0.03 9.59 21.22 0.20 0.24 16 6 C -0.69 1.86 5.86 21.22 0.12 1.98 16 7 S 2.72 -5.12 5.74 -56.49 -0.32 -5.44 16 8 O -0.99 -5.89 17.63 -128.00 -2.26 -8.15 16 9 O -0.97 -2.03 17.39 -128.00 -2.23 -4.25 16 10 N -1.09 10.41 5.79 -167.20 -0.97 9.44 16 11 C 0.12 -1.31 3.93 45.52 0.18 -1.13 16 12 H 0.12 -1.51 6.77 -2.39 -0.02 -1.52 16 13 C -0.14 1.78 7.13 31.12 0.22 2.01 16 14 C 0.10 -0.88 5.11 45.52 0.23 -0.64 16 15 H 0.14 -1.43 8.14 -2.39 -0.02 -1.45 16 16 N -0.27 0.38 3.52 -324.67 -1.14 -0.76 16 17 C -0.04 0.20 9.68 83.49 0.81 1.01 16 18 C -0.06 -0.03 12.05 83.73 1.01 0.98 16 19 N -0.32 -2.96 12.41 -58.26 -0.72 -3.69 16 20 N -0.12 -0.93 13.16 37.02 0.49 -0.44 16 21 C -0.14 1.53 7.67 31.12 0.24 1.77 16 22 C -0.09 0.51 10.60 66.72 0.71 1.22 16 23 S 0.19 -1.00 20.60 -56.49 -1.16 -2.16 16 24 H 0.40 -3.48 8.70 -74.06 -0.64 -4.13 16 25 H 0.12 -0.27 7.96 -2.38 -0.02 -0.28 16 26 H -0.26 -0.12 7.11 99.48 0.71 0.59 16 27 H -0.27 -0.80 7.11 99.48 0.71 -0.09 16 28 H 0.15 0.03 7.96 -2.91 -0.02 0.01 16 29 H 0.43 -5.82 8.94 -96.73 -0.87 -6.69 16 30 H 0.14 -2.26 8.14 -2.38 -0.02 -2.28 16 31 H 0.10 -1.26 7.00 -2.39 -0.02 -1.28 16 32 H 0.23 -2.94 6.73 -2.91 -0.02 -2.96 16 33 H 0.21 -1.29 8.06 -2.91 -0.02 -1.31 16 34 H 0.07 -0.56 8.14 -2.39 -0.02 -0.57 16 35 H 0.14 -2.13 8.14 -2.39 -0.02 -2.15 16 36 H 0.21 -2.40 8.00 -2.91 -0.02 -2.42 16 Total: 0.00 -31.12 337.29 -4.35 -35.47 By element: Atomic # 1 Polarization: -26.21 SS G_CDS: -0.31 Total: -26.53 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.08 Total: 8.37 kcal Atomic # 7 Polarization: 6.89 SS G_CDS: -2.35 Total: 4.55 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -6.40 Total: -13.80 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.13 Total: -0.46 kcal Atomic # 16 Polarization: -6.11 SS G_CDS: -1.49 Total: -7.60 kcal Total: -31.12 -4.35 -35.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_15065232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.925 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds