Wall clock time and date at job start Mon Mar 8 2021 10:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33388 * 125.20579 * 2 1 4 4 C 1.50699 * 122.53726 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47440 * 314.92427 * 4 3 2 6 6 Si 1.86301 * 109.46781 * 74.92448 * 4 3 2 7 7 C 1.38419 * 114.92419 * 179.97438 * 3 2 1 8 8 S 1.76203 * 122.54184 * 179.97438 * 7 3 2 9 9 O 1.42100 * 106.40508 * 155.42541 * 8 7 3 10 10 O 1.42096 * 106.40125 * 22.50649 * 8 7 3 11 11 N 1.65603 * 107.21719 * 268.96557 * 8 7 3 12 12 C 1.46504 * 119.99820 * 62.76496 * 11 8 7 13 13 H 1.08998 * 112.90784 * 13.92172 * 12 11 8 14 14 C 1.53778 * 113.61203 * 145.17319 * 12 11 8 15 15 C 1.53781 * 87.08237 * 89.11728 * 14 12 11 16 16 H 1.08999 * 113.61297 * 270.79905 * 15 14 12 17 17 N 1.46494 * 113.61487 * 139.97977 * 15 14 12 18 18 C 1.35316 * 125.86865 * 276.52841 * 17 15 14 19 19 C 1.35351 * 106.17217 * 179.77516 * 18 17 15 20 20 N 1.33763 * 106.50209 * 0.22808 * 19 18 17 21 21 N 1.28641 * 108.88341 * 359.97438 * 20 19 18 22 22 C 1.53779 * 87.17102 * 25.38781 * 15 14 12 23 23 C 1.33388 * 114.92120 * 0.24288 * 7 3 2 24 24 C 1.50705 * 125.20520 * 179.75537 * 23 7 3 25 25 S 1.75885 * 109.59182 * 359.63723 * 23 7 3 26 26 H 1.09000 * 109.47170 * 90.73960 * 1 2 3 27 27 H 1.08998 * 109.47251 * 210.74349 * 1 2 3 28 28 H 1.08997 * 109.47515 * 330.74167 * 1 2 3 29 29 H 1.09001 * 109.47643 * 194.91875 * 4 3 2 30 30 H 0.96704 * 113.99550 * 303.52755 * 5 4 3 31 31 H 1.48507 * 109.99772 * 303.78455 * 6 4 3 32 32 H 1.48495 * 110.00284 * 65.10718 * 6 4 3 33 33 H 0.96993 * 120.00254 * 242.76087 * 11 8 7 34 34 H 1.08998 * 113.61936 * 334.56618 * 14 12 11 35 35 H 1.09003 * 113.69024 * 203.67432 * 14 12 11 36 36 H 1.07996 * 126.90923 * 0.03697 * 18 17 15 37 37 H 1.08001 * 126.74793 * 180.24707 * 19 18 17 38 38 H 1.09008 * 113.61489 * 89.16300 * 22 15 14 39 39 H 1.09002 * 113.61724 * 220.05912 * 22 15 14 40 40 H 1.09008 * 109.46576 * 84.09344 * 24 23 7 41 41 H 1.09000 * 109.47203 * 204.09271 * 24 23 7 42 42 H 1.08997 * 109.46818 * 324.09913 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0006 5 8 0.6445 2.5649 -0.9549 6 14 1.0465 2.8866 1.6951 7 6 3.6379 0.8428 0.0006 8 16 4.8356 2.1352 0.0000 9 8 6.0175 1.5873 0.5676 10 8 4.1845 3.2859 0.5208 11 7 5.1902 2.4742 -1.5817 12 6 4.1451 2.9818 -2.4741 13 1 3.2577 3.3198 -1.9391 14 6 4.6596 3.9916 -3.5135 15 6 4.9331 2.7883 -4.4312 16 1 5.9267 2.3586 -4.3034 17 7 4.5955 3.0326 -5.8356 18 6 3.3657 2.9141 -6.3876 19 6 3.5066 3.2359 -7.6947 20 7 4.7994 3.5267 -7.8773 21 7 5.4181 3.3943 -6.7572 22 6 3.8351 2.0431 -3.6542 23 6 3.9750 -0.4477 -0.0041 24 6 5.3860 -0.9771 -0.0099 25 16 2.5209 -1.4372 0.0009 26 1 -0.3633 -0.0133 -1.0276 27 1 -0.3634 -0.8832 0.5253 28 1 -0.3634 0.8965 0.5022 29 1 2.4866 3.1970 -0.2650 30 1 0.9034 2.3151 -1.8525 31 1 0.0454 1.8694 2.1054 32 1 2.1605 2.9275 2.6762 33 1 6.0898 2.3368 -1.9173 34 1 5.5622 4.5173 -3.2021 35 1 3.8882 4.6625 -3.8916 36 1 2.4543 2.6255 -5.8851 37 1 2.7281 3.2545 -8.4431 38 1 2.8367 2.1795 -4.0701 39 1 4.0729 0.9979 -3.4562 40 1 5.7664 -1.0086 1.0112 41 1 5.3954 -1.9819 -0.4322 42 1 6.0167 -0.3236 -0.6125 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567558_15065288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:26 Heat of formation + Delta-G solvation = 73.112743 kcal Electronic energy + Delta-G solvation = -30961.395397 eV Core-core repulsion = 26779.964282 eV Total energy + Delta-G solvation = -4181.431116 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.29117 -40.99835 -40.41691 -38.70212 -37.24947 -37.14996 -35.40944 -34.30034 -33.08196 -32.00423 -31.06251 -28.16971 -27.47267 -26.89851 -26.05933 -23.69332 -23.41487 -23.16918 -21.37077 -20.93207 -20.32819 -19.48647 -18.94162 -18.51862 -18.29293 -17.73531 -17.44209 -16.91301 -16.44146 -16.35882 -16.06821 -15.76863 -15.48390 -15.29626 -15.13880 -14.99643 -14.70608 -14.44732 -14.39817 -14.13926 -14.10599 -13.94480 -13.62843 -13.51470 -13.36536 -13.10192 -13.03958 -12.89972 -12.77257 -12.76110 -12.71960 -12.31072 -11.94472 -11.82805 -11.76959 -11.55798 -11.08187 -11.07665 -10.96153 -10.38075 -10.18474 -9.64040 -4.85376 -1.02971 -0.61076 0.19035 0.53652 0.56471 0.66959 1.22538 1.44977 1.63872 1.69078 1.79202 1.97527 2.40633 2.56495 2.77973 2.95850 3.06265 3.21876 3.26848 3.44092 3.50405 3.52754 3.72525 3.84322 3.86550 3.92522 3.96338 4.00221 4.08866 4.14959 4.23319 4.25725 4.29423 4.42731 4.44627 4.46918 4.48899 4.66915 4.70680 4.73263 4.87213 4.93379 5.08471 5.17731 5.43616 5.54887 6.35499 7.54257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.165 4.165 3 C -0.084 4.084 4 C -0.088 4.088 5 O -0.528 6.528 6 Si 0.756 3.244 7 C -0.689 4.689 8 S 2.704 3.296 9 O -0.945 6.945 10 O -0.941 6.941 11 N -1.099 6.099 12 C 0.129 3.871 13 H 0.122 0.878 14 C -0.144 4.144 15 C 0.116 3.884 16 H 0.136 0.864 17 N -0.282 5.282 18 C -0.052 4.052 19 C -0.048 4.048 20 N -0.271 5.271 21 N -0.085 5.085 22 C -0.159 4.159 23 C -0.048 4.048 24 C -0.110 4.110 25 S 0.161 5.839 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.359 0.641 31 H -0.253 1.253 32 H -0.249 1.249 33 H 0.422 0.578 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.190 0.810 37 H 0.191 0.809 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -2.266 0.149 4.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.283 4.283 3 C -0.094 4.094 4 C -0.198 4.198 5 O -0.333 6.333 6 Si 0.653 3.347 7 C -0.789 4.789 8 S 2.792 3.208 9 O -0.935 6.935 10 O -0.930 6.930 11 N -0.858 5.858 12 C 0.020 3.980 13 H 0.140 0.860 14 C -0.185 4.185 15 C 0.014 3.986 16 H 0.153 0.847 17 N -0.076 5.076 18 C -0.203 4.203 19 C -0.206 4.206 20 N -0.136 5.136 21 N -0.064 5.064 22 C -0.199 4.199 23 C -0.170 4.170 24 C -0.169 4.169 25 S 0.427 5.573 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.205 0.795 31 H -0.178 1.178 32 H -0.173 1.173 33 H 0.258 0.742 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.207 0.793 37 H 0.208 0.792 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.155 -3.159 1.971 4.880 hybrid contribution 0.032 -0.721 -1.218 1.416 sum -3.123 -3.879 0.753 5.037 Atomic orbital electron populations 1.20553 0.86521 1.03875 1.03660 1.24500 1.00729 0.94588 1.08488 1.18603 0.90129 0.97139 1.03528 1.25748 0.95563 0.92217 1.06251 1.86820 1.35593 1.90670 1.20169 0.93174 0.81870 0.88289 0.71335 1.29445 1.11734 1.13330 1.24365 1.01727 0.73230 0.73700 0.72115 1.93636 1.45579 1.79662 1.74614 1.93533 1.75864 1.47313 1.76330 1.55475 1.19040 1.80949 1.30290 1.21565 0.91214 0.94585 0.90595 0.86004 1.23831 1.04424 0.96408 0.93818 1.23433 1.01930 0.99447 0.73762 0.84678 1.47480 1.06504 1.43464 1.10109 1.23588 0.91370 1.09722 0.95610 1.23694 0.95612 1.05354 0.95891 1.75177 1.05572 1.17116 1.15766 1.78367 1.18778 1.17066 0.92164 1.24066 0.99459 1.01166 0.95253 1.24590 1.00845 0.95029 0.96496 1.20881 0.88016 1.02270 1.05686 1.84538 0.95069 1.08636 1.69066 0.89822 0.91464 0.89021 0.87787 0.79458 1.17817 1.17285 0.74191 0.88206 0.87099 0.79322 0.79208 0.87023 0.88523 0.87807 0.89828 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.10 9.04 36.00 0.33 0.42 16 2 C -0.17 0.04 6.16 -36.01 -0.22 -0.18 16 3 C -0.08 0.01 4.17 -106.25 -0.44 -0.44 16 4 C -0.09 0.05 1.91 36.01 0.07 0.11 16 5 O -0.53 1.24 10.90 -35.23 -0.38 0.86 16 6 Si 0.76 0.71 30.81 -169.99 -5.24 -4.53 16 7 C -0.69 0.16 5.82 -41.21 -0.24 -0.08 16 8 S 2.70 -0.56 5.26 -107.50 -0.57 -1.12 16 9 O -0.94 -2.00 15.31 -57.17 -0.88 -2.87 16 10 O -0.94 -1.89 13.65 -57.17 -0.78 -2.67 16 11 N -1.10 4.54 5.72 -4.12 -0.02 4.52 16 12 C 0.13 -0.68 4.48 -67.03 -0.30 -0.98 16 13 H 0.12 -0.69 5.65 -51.93 -0.29 -0.98 16 14 C -0.14 0.69 7.67 -25.92 -0.20 0.49 16 15 C 0.12 -0.47 4.77 -67.12 -0.32 -0.79 16 16 H 0.14 -0.64 8.11 -51.93 -0.42 -1.06 16 17 N -0.28 0.18 3.53 -53.98 -0.19 -0.01 16 18 C -0.05 0.10 10.78 -17.04 -0.18 -0.08 16 19 C -0.05 -0.02 12.05 -17.74 -0.21 -0.23 16 20 N -0.27 -1.19 12.41 30.23 0.38 -0.81 16 21 N -0.08 -0.30 13.17 60.35 0.79 0.49 16 22 C -0.16 0.98 7.25 -25.83 -0.19 0.79 16 23 C -0.05 0.03 6.49 -36.00 -0.23 -0.20 16 24 C -0.11 0.22 8.86 36.01 0.32 0.54 16 25 S 0.16 -0.14 23.31 -107.50 -2.51 -2.65 16 26 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 27 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.09 -0.01 4.48 -51.93 -0.23 -0.25 16 29 H 0.10 -0.12 2.97 -51.93 -0.15 -0.27 16 30 H 0.36 -2.07 9.04 45.56 0.41 -1.66 16 31 H -0.25 -0.53 6.15 56.52 0.35 -0.18 16 32 H -0.25 -0.95 7.11 56.52 0.40 -0.55 16 33 H 0.42 -2.52 8.79 -34.47 -0.30 -2.82 16 34 H 0.10 -0.46 8.14 -51.93 -0.42 -0.88 16 35 H 0.11 -0.54 8.14 -51.93 -0.42 -0.96 16 36 H 0.19 -1.17 6.74 -52.49 -0.35 -1.52 16 37 H 0.19 -0.48 8.06 -52.49 -0.42 -0.90 16 38 H 0.11 -0.88 6.33 -51.92 -0.33 -1.21 16 39 H 0.10 -0.60 8.14 -51.93 -0.42 -1.02 16 40 H 0.10 -0.16 8.14 -51.92 -0.42 -0.58 16 41 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 42 H 0.09 -0.26 6.75 -51.93 -0.35 -0.61 16 LS Contribution 360.66 15.07 5.44 5.44 Total: 0.00 -10.88 360.66 -10.45 -21.32 By element: Atomic # 1 Polarization: -12.68 SS G_CDS: -4.66 Total: -17.34 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.83 Total: -0.62 kcal Atomic # 7 Polarization: 3.23 SS G_CDS: 0.96 Total: 4.19 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: -2.04 Total: -4.69 kcal Atomic # 14 Polarization: 0.71 SS G_CDS: -5.24 Total: -4.53 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -3.07 Total: -3.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -10.88 -10.45 -21.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_15065288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.437 kcal (2) G-P(sol) polarization free energy of solvation -10.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds