Wall clock time and date at job start Mon Mar 8 2021 10:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33388 * 125.20579 * 2 1 4 4 C 1.50699 * 122.53726 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47440 * 314.92427 * 4 3 2 6 6 Si 1.86301 * 109.46781 * 74.92448 * 4 3 2 7 7 C 1.38419 * 114.92419 * 179.97438 * 3 2 1 8 8 S 1.76203 * 122.54184 * 179.97438 * 7 3 2 9 9 O 1.42100 * 106.40508 * 155.42541 * 8 7 3 10 10 O 1.42096 * 106.40125 * 22.50649 * 8 7 3 11 11 N 1.65603 * 107.21719 * 268.96557 * 8 7 3 12 12 C 1.46504 * 119.99820 * 62.76496 * 11 8 7 13 13 H 1.08998 * 112.90784 * 13.92172 * 12 11 8 14 14 C 1.53778 * 113.61203 * 145.17319 * 12 11 8 15 15 C 1.53781 * 87.08237 * 89.11728 * 14 12 11 16 16 H 1.08999 * 113.61297 * 270.79905 * 15 14 12 17 17 N 1.46494 * 113.61487 * 139.97977 * 15 14 12 18 18 C 1.35316 * 125.86865 * 276.52841 * 17 15 14 19 19 C 1.35351 * 106.17217 * 179.77516 * 18 17 15 20 20 N 1.33763 * 106.50209 * 0.22808 * 19 18 17 21 21 N 1.28641 * 108.88341 * 359.97438 * 20 19 18 22 22 C 1.53779 * 87.17102 * 25.38781 * 15 14 12 23 23 C 1.33388 * 114.92120 * 0.24288 * 7 3 2 24 24 C 1.50705 * 125.20520 * 179.75537 * 23 7 3 25 25 S 1.75885 * 109.59182 * 359.63723 * 23 7 3 26 26 H 1.09000 * 109.47170 * 90.73960 * 1 2 3 27 27 H 1.08998 * 109.47251 * 210.74349 * 1 2 3 28 28 H 1.08997 * 109.47515 * 330.74167 * 1 2 3 29 29 H 1.09001 * 109.47643 * 194.91875 * 4 3 2 30 30 H 0.96704 * 113.99550 * 303.52755 * 5 4 3 31 31 H 1.48507 * 109.99772 * 303.78455 * 6 4 3 32 32 H 1.48495 * 110.00284 * 65.10718 * 6 4 3 33 33 H 0.96993 * 120.00254 * 242.76087 * 11 8 7 34 34 H 1.08998 * 113.61936 * 334.56618 * 14 12 11 35 35 H 1.09003 * 113.69024 * 203.67432 * 14 12 11 36 36 H 1.07996 * 126.90923 * 0.03697 * 18 17 15 37 37 H 1.08001 * 126.74793 * 180.24707 * 19 18 17 38 38 H 1.09008 * 113.61489 * 89.16300 * 22 15 14 39 39 H 1.09002 * 113.61724 * 220.05912 * 22 15 14 40 40 H 1.09008 * 109.46576 * 84.09344 * 24 23 7 41 41 H 1.09000 * 109.47203 * 204.09271 * 24 23 7 42 42 H 1.08997 * 109.46818 * 324.09913 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0006 5 8 0.6445 2.5649 -0.9549 6 14 1.0465 2.8866 1.6951 7 6 3.6379 0.8428 0.0006 8 16 4.8356 2.1352 0.0000 9 8 6.0175 1.5873 0.5676 10 8 4.1845 3.2859 0.5208 11 7 5.1902 2.4742 -1.5817 12 6 4.1451 2.9818 -2.4741 13 1 3.2577 3.3198 -1.9391 14 6 4.6596 3.9916 -3.5135 15 6 4.9331 2.7883 -4.4312 16 1 5.9267 2.3586 -4.3034 17 7 4.5955 3.0326 -5.8356 18 6 3.3657 2.9141 -6.3876 19 6 3.5066 3.2359 -7.6947 20 7 4.7994 3.5267 -7.8773 21 7 5.4181 3.3943 -6.7572 22 6 3.8351 2.0431 -3.6542 23 6 3.9750 -0.4477 -0.0041 24 6 5.3860 -0.9771 -0.0099 25 16 2.5209 -1.4372 0.0009 26 1 -0.3633 -0.0133 -1.0276 27 1 -0.3634 -0.8832 0.5253 28 1 -0.3634 0.8965 0.5022 29 1 2.4866 3.1970 -0.2650 30 1 0.9034 2.3151 -1.8525 31 1 0.0454 1.8694 2.1054 32 1 2.1605 2.9275 2.6762 33 1 6.0898 2.3368 -1.9173 34 1 5.5622 4.5173 -3.2021 35 1 3.8882 4.6625 -3.8916 36 1 2.4543 2.6255 -5.8851 37 1 2.7281 3.2545 -8.4431 38 1 2.8367 2.1795 -4.0701 39 1 4.0729 0.9979 -3.4562 40 1 5.7664 -1.0086 1.0112 41 1 5.3954 -1.9819 -0.4322 42 1 6.0167 -0.3236 -0.6125 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567558_15065288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:25 Heat of formation + Delta-G solvation = 68.854531 kcal Electronic energy + Delta-G solvation = -30961.580047 eV Core-core repulsion = 26779.964282 eV Total energy + Delta-G solvation = -4181.615766 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.081 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.21987 -40.70454 -40.27857 -38.73017 -37.19887 -37.09641 -35.23976 -34.17313 -32.90522 -31.92662 -30.93236 -28.05466 -27.03416 -26.65735 -25.96206 -23.58924 -23.31504 -23.04012 -21.18222 -20.72933 -20.19811 -19.36636 -18.81356 -18.36502 -18.15695 -17.46961 -17.32105 -16.80357 -16.38290 -16.26543 -15.90346 -15.57287 -15.35232 -15.15157 -15.01533 -14.88646 -14.38522 -14.28267 -14.24417 -14.02759 -13.90409 -13.68850 -13.57048 -13.46094 -13.41366 -13.00937 -12.89032 -12.80613 -12.70298 -12.66260 -12.45178 -12.05086 -11.96376 -11.85359 -11.64644 -11.47912 -10.97390 -10.83920 -10.75120 -10.31985 -10.09149 -9.55922 -4.95686 -0.96207 -0.53543 0.28683 0.61575 0.67622 0.71509 1.44894 1.46517 1.64659 1.66640 1.84184 1.88438 2.47924 2.94215 3.05463 3.17679 3.35825 3.43461 3.60237 3.65826 3.72544 3.76712 3.95155 4.00163 4.09345 4.12307 4.22907 4.29102 4.31706 4.42640 4.44802 4.57904 4.58759 4.60867 4.65800 4.77896 4.82577 4.85474 4.91243 5.02162 5.03208 5.10119 5.19941 5.29325 5.72305 5.83873 6.76484 7.55602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.172 4.172 3 C -0.091 4.091 4 C -0.076 4.076 5 O -0.528 6.528 6 Si 0.779 3.221 7 C -0.695 4.695 8 S 2.714 3.286 9 O -0.974 6.974 10 O -0.967 6.967 11 N -1.087 6.087 12 C 0.126 3.874 13 H 0.131 0.869 14 C -0.142 4.142 15 C 0.102 3.898 16 H 0.137 0.863 17 N -0.274 5.274 18 C -0.033 4.033 19 C -0.070 4.070 20 N -0.322 5.322 21 N -0.133 5.133 22 C -0.145 4.145 23 C -0.051 4.051 24 C -0.117 4.117 25 S 0.173 5.827 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.379 0.621 31 H -0.269 1.269 32 H -0.296 1.296 33 H 0.431 0.569 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.237 0.763 37 H 0.211 0.789 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 -3.139 -0.591 6.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.291 4.291 3 C -0.102 4.102 4 C -0.189 4.189 5 O -0.335 6.335 6 Si 0.683 3.317 7 C -0.795 4.795 8 S 2.803 3.197 9 O -0.964 6.964 10 O -0.957 6.957 11 N -0.848 5.848 12 C 0.018 3.982 13 H 0.149 0.851 14 C -0.183 4.183 15 C 0.001 3.999 16 H 0.154 0.846 17 N -0.068 5.068 18 C -0.184 4.184 19 C -0.228 4.228 20 N -0.186 5.186 21 N -0.111 5.111 22 C -0.185 4.185 23 C -0.172 4.172 24 C -0.175 4.175 25 S 0.439 5.561 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.229 0.771 31 H -0.196 1.196 32 H -0.224 1.224 33 H 0.269 0.731 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.253 0.747 37 H 0.228 0.772 38 H 0.156 0.844 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.612 -4.016 1.227 6.237 hybrid contribution 0.458 -0.501 -0.918 1.142 sum -4.154 -4.517 0.309 6.144 Atomic orbital electron populations 1.20600 0.85977 1.03401 1.04774 1.24691 1.01273 0.94844 1.08246 1.18680 0.90204 0.97345 1.03946 1.25407 0.95718 0.92209 1.05528 1.86768 1.34787 1.90689 1.21212 0.92903 0.79468 0.87641 0.71679 1.29394 1.11627 1.13424 1.25045 1.01171 0.72552 0.73240 0.72780 1.93595 1.46753 1.80048 1.75984 1.93501 1.76267 1.48412 1.77530 1.55145 1.19961 1.80618 1.29102 1.21697 0.91010 0.94915 0.90567 0.85116 1.23844 1.04494 0.96351 0.93566 1.23822 1.03212 1.00556 0.72315 0.84577 1.47767 1.06603 1.41869 1.10565 1.24278 0.92105 1.07158 0.94852 1.24244 0.94913 1.05771 0.97827 1.75095 1.07688 1.18907 1.16951 1.78282 1.20217 1.19658 0.92941 1.24121 0.99909 1.01007 0.93448 1.24782 1.01495 0.94994 0.95963 1.21003 0.87439 1.03552 1.05541 1.84492 0.94686 1.08174 1.68758 0.87892 0.91325 0.90085 0.87132 0.77129 1.19572 1.22362 0.73055 0.88731 0.86490 0.74702 0.77229 0.84374 0.87821 0.88590 0.87979 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.31 9.04 71.23 0.64 0.95 16 2 C -0.17 0.27 6.16 24.59 0.15 0.42 16 3 C -0.09 0.09 4.17 -20.92 -0.09 0.00 16 4 C -0.08 0.14 1.91 71.24 0.14 0.28 16 5 O -0.53 3.63 10.90 -148.98 -1.62 2.00 16 6 Si 0.78 2.28 30.81 68.60 2.11 4.39 16 7 C -0.69 0.64 5.82 21.21 0.12 0.76 16 8 S 2.71 -0.73 5.26 -56.49 -0.30 -1.03 16 9 O -0.97 -4.82 15.31 -128.00 -1.96 -6.78 16 10 O -0.97 -4.45 13.65 -128.00 -1.75 -6.20 16 11 N -1.09 9.80 5.72 -166.96 -0.96 8.84 16 12 C 0.13 -1.55 4.48 45.57 0.20 -1.34 16 13 H 0.13 -1.77 5.65 -2.39 -0.01 -1.78 16 14 C -0.14 1.52 7.67 31.12 0.24 1.76 16 15 C 0.10 -0.95 4.77 45.52 0.22 -0.74 16 16 H 0.14 -1.34 8.11 -2.39 -0.02 -1.36 16 17 N -0.27 0.58 3.53 -324.68 -1.15 -0.56 16 18 C -0.03 0.20 10.78 83.49 0.90 1.10 16 19 C -0.07 -0.02 12.05 83.73 1.01 0.99 16 20 N -0.32 -3.18 12.41 -58.26 -0.72 -3.90 16 21 N -0.13 -1.06 13.17 37.02 0.49 -0.57 16 22 C -0.14 2.20 7.25 31.18 0.23 2.43 16 23 C -0.05 0.11 6.49 24.59 0.16 0.27 16 24 C -0.12 0.52 8.86 71.24 0.63 1.16 16 25 S 0.17 -0.48 23.31 -56.49 -1.32 -1.80 16 26 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 27 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.08 -0.08 4.48 -2.39 -0.01 -0.09 16 29 H 0.11 -0.34 2.97 -2.39 -0.01 -0.35 16 30 H 0.38 -5.71 9.04 -74.05 -0.67 -6.38 16 31 H -0.27 -1.44 6.15 99.48 0.61 -0.83 16 32 H -0.30 -3.16 7.11 99.48 0.71 -2.45 16 33 H 0.43 -5.35 8.79 -96.75 -0.85 -6.20 16 34 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.12 -1.35 8.14 -2.39 -0.02 -1.37 16 36 H 0.24 -4.00 6.74 -2.91 -0.02 -4.02 16 37 H 0.21 -1.22 8.06 -2.91 -0.02 -1.25 16 38 H 0.14 -2.82 6.33 -2.38 -0.02 -2.84 16 39 H 0.10 -1.62 8.14 -2.39 -0.02 -1.64 16 40 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 41 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.10 -0.60 6.75 -2.39 -0.02 -0.62 16 Total: 0.00 -28.81 360.66 -3.08 -31.89 By element: Atomic # 1 Polarization: -33.85 SS G_CDS: -0.46 Total: -34.31 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 4.55 Total: 8.03 kcal Atomic # 7 Polarization: 6.15 SS G_CDS: -2.34 Total: 3.81 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -5.33 Total: -10.97 kcal Atomic # 14 Polarization: 2.28 SS G_CDS: 2.11 Total: 4.39 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -1.61 Total: -2.83 kcal Total: -28.81 -3.08 -31.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567558_15065288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.740 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds