Wall clock time and date at job start Mon Mar 8 2021 10:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86297 * 109.47292 * 2 1 4 4 C 1.50698 * 109.47261 * 120.00154 * 2 1 3 5 5 C 1.33394 * 122.54179 * 74.99810 * 4 2 1 6 6 S 1.76198 * 125.20141 * 0.02562 * 5 4 2 7 7 O 1.42104 * 106.40433 * 336.46014 * 6 5 4 8 8 O 1.42097 * 106.40172 * 203.54041 * 6 5 4 9 9 N 1.65594 * 107.21917 * 89.99783 * 6 5 4 10 10 C 1.46504 * 119.99871 * 65.00116 * 9 6 5 11 11 H 1.09000 * 112.90412 * 5.95126 * 10 9 6 12 12 C 1.53781 * 113.61790 * 137.20422 * 10 9 6 13 13 C 1.53778 * 87.08320 * 89.11283 * 12 10 9 14 14 H 1.09005 * 113.61281 * 139.98048 * 13 12 10 15 15 N 1.46495 * 113.69286 * 270.87499 * 13 12 10 16 16 C 1.34943 * 126.03744 * 303.13666 * 15 13 12 17 17 C 1.35316 * 107.74520 * 179.97438 * 16 15 13 18 18 C 1.39872 * 107.92026 * 0.02562 * 17 16 15 19 19 N 1.30836 * 108.20156 * 359.74159 * 18 17 16 20 20 C 1.53782 * 87.08033 * 25.43599 * 13 12 10 21 21 S 1.75877 * 109.59272 * 180.26584 * 5 4 2 22 22 C 1.75880 * 90.97467 * 359.68588 * 21 5 4 23 23 C 1.33398 * 109.59268 * 0.31224 * 22 21 5 24 24 H 0.96703 * 113.99938 * 59.99785 * 1 2 3 25 25 H 1.09006 * 109.47344 * 240.00049 * 2 1 3 26 26 H 1.48499 * 110.00255 * 59.99986 * 3 2 1 27 27 H 1.48499 * 110.00140 * 181.31913 * 3 2 1 28 28 H 0.96996 * 120.00551 * 244.99750 * 9 6 5 29 29 H 1.08993 * 113.61702 * 203.66939 * 12 10 9 30 30 H 1.09004 * 113.61070 * 334.56488 * 12 10 9 31 31 H 1.07996 * 126.13116 * 359.96432 * 16 15 13 32 32 H 1.08005 * 126.04195 * 180.02562 * 17 16 15 33 33 H 1.08005 * 125.89537 * 179.97438 * 18 17 16 34 34 H 1.08999 * 113.61547 * 220.01968 * 20 13 12 35 35 H 1.08998 * 113.69215 * 89.12398 * 20 13 12 36 36 H 1.07996 * 125.20481 * 180.02562 * 22 21 5 37 37 H 1.07992 * 122.53903 * 179.77688 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8961 -2.0379 1.3572 6 16 1.2762 -3.1577 0.1463 7 8 0.3694 -2.4168 -0.6587 8 8 0.9089 -4.3400 0.8438 9 7 2.5445 -3.5691 -0.8358 10 6 3.6785 -4.3204 -0.2917 11 1 3.5223 -4.6365 0.7397 12 6 4.1696 -5.4486 -1.2142 13 6 5.0999 -4.4086 -1.8604 14 1 6.0914 -4.7959 -2.0953 15 7 4.4900 -3.6889 -2.9812 16 6 3.9667 -4.2473 -4.0926 17 6 3.5063 -3.2471 -4.8791 18 6 3.7574 -2.0359 -4.2262 19 7 4.3423 -2.2998 -3.0860 20 6 5.0379 -3.6416 -0.5289 21 16 2.5567 -2.4987 2.9207 22 6 2.8611 -0.8137 3.3224 23 6 2.4639 -0.0348 2.3149 24 1 -0.3933 0.4417 -0.7651 25 1 1.7924 -0.5138 -0.8900 26 1 1.5615 2.4679 1.2085 27 1 3.5346 1.7702 -0.0321 28 1 2.5366 -3.3127 -1.7712 29 1 4.7002 -6.2424 -0.6887 30 1 3.4014 -5.8263 -1.8890 31 1 3.9233 -5.3033 -4.3148 32 1 3.0293 -3.3634 -5.8411 33 1 3.5078 -1.0528 -4.5973 34 1 4.9707 -2.5605 -0.6505 35 1 5.8056 -3.9404 0.1848 36 1 3.2981 -0.4629 4.2456 37 1 2.5515 1.0412 2.3431 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567564_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:32:38 Heat of formation + Delta-G solvation = 65.926451 kcal Electronic energy + Delta-G solvation = -26842.579639 eV Core-core repulsion = 23037.338051 eV Total energy + Delta-G solvation = -3805.241588 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.48024 -40.06752 -39.94423 -38.04996 -36.96587 -36.72087 -34.33858 -32.04625 -31.48706 -30.90726 -27.98518 -27.04535 -25.96978 -24.16362 -22.69955 -21.85433 -21.58583 -20.49586 -20.05958 -19.36218 -18.69418 -18.31406 -18.02827 -17.39800 -17.01887 -16.75193 -16.20829 -15.80612 -15.39310 -15.36306 -15.08284 -14.72989 -14.62478 -14.35625 -14.31116 -14.16948 -13.83323 -13.70520 -13.55918 -13.36294 -12.98906 -12.92651 -12.75898 -12.50351 -12.43026 -12.21718 -12.18004 -11.88603 -11.75394 -11.50982 -10.73420 -10.44499 -10.36238 -10.20069 -9.66619 -9.55567 -5.03267 -0.80917 -0.51654 0.28978 0.60567 0.90735 1.16908 1.22828 1.40533 1.61878 1.89891 1.90948 1.97702 2.71798 2.91907 3.07421 3.28708 3.39078 3.54479 3.70359 3.84351 3.85112 3.92746 4.00156 4.05175 4.08489 4.28860 4.32090 4.38395 4.47961 4.58937 4.60046 4.62617 4.83349 4.83491 4.86767 4.99498 5.06720 5.09180 5.68368 5.83294 6.03551 6.73313 6.77869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.074 4.074 3 Si 0.693 3.307 4 C 0.056 3.944 5 C -0.774 4.774 6 S 2.713 3.287 7 O -0.922 6.922 8 O -0.951 6.951 9 N -1.094 6.094 10 C 0.125 3.875 11 H 0.110 0.890 12 C -0.151 4.151 13 C 0.130 3.870 14 H 0.107 0.893 15 N -0.361 5.361 16 C 0.054 3.946 17 C -0.271 4.271 18 C 0.044 3.956 19 N -0.295 5.295 20 C -0.152 4.152 21 S 0.226 5.774 22 C -0.163 4.163 23 C -0.168 4.168 24 H 0.385 0.615 25 H 0.079 0.921 26 H -0.248 1.248 27 H -0.251 1.251 28 H 0.420 0.580 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.149 0.851 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.179 0.821 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 0.060 -2.154 5.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.187 4.187 3 Si 0.593 3.407 4 C 0.039 3.961 5 C -0.975 4.975 6 S 2.798 3.202 7 O -0.912 6.912 8 O -0.941 6.941 9 N -0.854 5.854 10 C 0.016 3.984 11 H 0.128 0.872 12 C -0.191 4.191 13 C 0.027 3.973 14 H 0.124 0.876 15 N -0.144 5.144 16 C -0.091 4.091 17 C -0.300 4.300 18 C -0.142 4.142 19 N -0.116 5.116 20 C -0.191 4.191 21 S 0.493 5.507 22 C -0.300 4.300 23 C -0.198 4.198 24 H 0.233 0.767 25 H 0.096 0.904 26 H -0.173 1.173 27 H -0.175 1.175 28 H 0.257 0.743 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.167 0.833 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.196 0.804 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.141 -0.989 0.950 5.321 hybrid contribution 0.114 0.994 -1.384 1.707 sum 5.255 0.005 -0.434 5.273 Atomic orbital electron populations 1.86503 1.14999 1.82189 1.49139 1.24607 0.87815 1.10645 0.95641 0.94900 0.80864 0.77725 0.87233 1.18111 0.92580 0.90730 0.94719 1.35779 1.27466 1.14143 1.20065 1.01589 0.72378 0.73215 0.73018 1.93665 1.58384 1.72258 1.66891 1.93620 1.80323 1.45493 1.74629 1.55517 1.36828 1.69472 1.23573 1.21701 0.86152 0.92300 0.98239 0.87214 1.23838 0.99430 0.96785 0.99088 1.22164 0.96720 0.93340 0.85035 0.87565 1.48450 1.46226 1.04568 1.15191 1.22540 0.98356 1.00205 0.88038 1.21602 1.12911 0.91528 1.03972 1.24019 0.97828 0.99977 0.92350 1.77379 1.22622 0.90812 1.20752 1.23681 0.97601 1.02892 0.94947 1.84192 1.55150 1.04941 1.06453 1.26175 1.03229 0.97317 1.03315 1.20227 1.04262 1.01470 0.93848 0.76678 0.90360 1.17255 1.17526 0.74301 0.86179 0.89360 0.80981 0.83291 0.79748 0.88317 0.86897 0.80359 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.42 11.10 -56.65 -0.63 -2.05 16 2 C -0.07 -0.14 1.78 36.00 0.06 -0.07 16 3 Si 0.69 -0.23 30.42 -169.99 -5.17 -5.40 16 4 C 0.06 0.18 5.17 -106.25 -0.55 -0.37 16 5 C -0.77 -2.48 6.54 29.04 0.19 -2.29 16 6 S 2.71 10.29 5.61 -107.50 -0.60 9.69 16 7 O -0.92 -5.22 14.29 -66.03 -0.94 -6.16 16 8 O -0.95 -5.88 17.51 -57.17 -1.00 -6.88 16 9 N -1.09 -1.07 5.71 -4.19 -0.02 -1.09 16 10 C 0.12 -0.15 4.49 -67.11 -0.30 -0.45 16 11 H 0.11 -0.21 7.84 -51.93 -0.41 -0.61 16 12 C -0.15 0.46 7.54 -25.92 -0.20 0.27 16 13 C 0.13 -0.29 4.90 -67.12 -0.33 -0.62 16 14 H 0.11 -0.38 8.14 -51.93 -0.42 -0.80 16 15 N -0.36 0.05 2.41 -54.08 -0.13 -0.08 16 16 C 0.05 -0.05 11.00 -17.23 -0.19 -0.24 16 17 C -0.27 0.11 10.80 -40.01 -0.43 -0.33 16 18 C 0.04 0.01 12.03 -17.36 -0.21 -0.20 16 19 N -0.29 -0.44 10.89 30.63 0.33 -0.10 16 20 C -0.15 0.33 7.50 -25.92 -0.19 0.13 16 21 S 0.23 0.29 23.21 -107.50 -2.50 -2.20 16 22 C -0.16 -0.08 11.23 29.04 0.33 0.25 16 23 C -0.17 -0.34 8.74 -41.20 -0.36 -0.70 16 24 H 0.39 -0.74 8.74 45.56 0.40 -0.34 16 25 H 0.08 0.08 7.16 -51.93 -0.37 -0.29 16 26 H -0.25 -0.48 6.86 56.52 0.39 -0.09 16 27 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 28 H 0.42 0.45 6.64 -34.47 -0.23 0.22 16 29 H 0.12 -0.64 8.14 -51.93 -0.42 -1.07 16 30 H 0.09 -0.22 7.80 -51.93 -0.41 -0.63 16 31 H 0.17 -0.61 8.06 -52.49 -0.42 -1.03 16 32 H 0.15 -0.29 8.06 -52.48 -0.42 -0.71 16 33 H 0.19 -0.44 8.06 -52.48 -0.42 -0.86 16 34 H 0.10 -0.02 7.51 -51.93 -0.39 -0.41 16 35 H 0.11 -0.50 8.14 -51.93 -0.42 -0.93 16 36 H 0.18 -0.46 8.06 -52.49 -0.42 -0.88 16 37 H 0.15 0.17 5.57 -52.49 -0.29 -0.13 16 LS Contribution 334.76 15.07 5.04 5.04 Total: 0.00 -10.78 334.76 -11.67 -22.45 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: -3.87 Total: -8.59 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.18 Total: -4.61 kcal Atomic # 7 Polarization: -1.45 SS G_CDS: 0.18 Total: -1.27 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -2.57 Total: -15.10 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -5.17 Total: -5.40 kcal Atomic # 16 Polarization: 10.58 SS G_CDS: -3.10 Total: 7.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -10.78 -11.67 -22.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567564_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.374 kcal (2) G-P(sol) polarization free energy of solvation -10.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds