Wall clock time and date at job start Mon Mar 8 2021 10:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.46992 * 2 1 4 4 C 1.50702 * 109.46735 * 119.99881 * 2 1 3 5 5 C 1.33378 * 125.20866 * 39.62700 * 4 2 1 6 6 S 1.76203 * 122.53674 * 359.95699 * 5 4 2 7 7 O 1.42098 * 106.40420 * 278.11651 * 6 5 4 8 8 O 1.42101 * 106.40352 * 51.03858 * 6 5 4 9 9 N 1.65604 * 107.21936 * 164.57656 * 6 5 4 10 10 C 1.46501 * 119.99887 * 63.31137 * 9 6 5 11 11 H 1.09000 * 112.84613 * 3.76281 * 10 9 6 12 12 C 1.53786 * 113.61003 * 134.95463 * 10 9 6 13 13 C 1.53787 * 87.07603 * 139.98351 * 12 10 9 14 14 H 1.09001 * 113.61668 * 89.11748 * 13 12 10 15 15 N 1.46499 * 113.60801 * 219.93166 * 13 12 10 16 16 C 1.34946 * 126.03810 * 85.00475 * 15 13 12 17 17 C 1.35315 * 107.74772 * 179.97438 * 16 15 13 18 18 C 1.39863 * 107.91953 * 359.97438 * 17 16 15 19 19 N 1.30838 * 108.20319 * 359.74225 * 18 17 16 20 20 C 1.53780 * 113.61494 * 232.56114 * 10 9 6 21 21 C 1.38428 * 114.92571 * 179.97438 * 5 4 2 22 22 C 1.33384 * 114.91641 * 0.02562 * 21 5 4 23 23 S 1.75883 * 109.59605 * 359.97438 * 22 21 5 24 24 H 0.96698 * 114.00109 * 305.72680 * 1 2 3 25 25 H 1.09000 * 109.47297 * 239.99777 * 2 1 3 26 26 H 1.48508 * 109.99961 * 300.00155 * 3 2 1 27 27 H 1.48502 * 110.00050 * 61.31609 * 3 2 1 28 28 H 0.96999 * 119.99778 * 243.31598 * 9 6 5 29 29 H 1.08997 * 113.60885 * 254.52729 * 12 10 9 30 30 H 1.08993 * 113.61786 * 25.43694 * 12 10 9 31 31 H 1.08008 * 126.12444 * 359.97438 * 16 15 13 32 32 H 1.08001 * 126.04159 * 180.02562 * 17 16 15 33 33 H 1.08004 * 125.89522 * 179.97438 * 18 17 16 34 34 H 1.08998 * 113.61371 * 334.57061 * 20 10 9 35 35 H 1.08998 * 113.61333 * 105.47100 * 20 10 9 36 36 H 1.07999 * 122.53884 * 180.02562 * 21 5 4 37 37 H 1.07997 * 125.20010 * 180.27044 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.3962 -1.8147 1.7532 6 16 -0.0111 -2.6096 1.0514 7 8 -1.1489 -1.9002 1.5221 8 8 0.2764 -2.7898 -0.3285 9 7 -0.0986 -4.1253 1.7127 10 6 -0.3165 -4.2848 3.1526 11 1 -0.4696 -3.3351 3.6652 12 6 -1.3691 -5.3502 3.5020 13 6 -0.4473 -5.7681 4.6598 14 1 -0.6352 -5.2244 5.5857 15 7 -0.3728 -7.2179 4.8565 16 6 0.4481 -8.0666 4.2032 17 6 0.2100 -9.3135 4.6719 18 6 -0.7903 -9.2236 5.6453 19 7 -1.1363 -7.9671 5.7610 20 6 0.7192 -5.1936 3.8355 21 6 2.0299 -2.2889 2.8889 22 6 3.0793 -1.5692 3.2887 23 16 3.3131 -0.2102 2.1969 24 1 -0.3933 0.5158 0.7171 25 1 1.7924 -0.5139 -0.8899 26 1 1.5614 2.4679 -1.2085 27 1 1.5878 2.4586 1.2242 28 1 -0.0055 -4.9075 1.1467 29 1 -2.3207 -4.9323 3.8305 30 1 -1.4843 -6.1177 2.7367 31 1 1.1665 -7.7986 3.4426 32 1 0.7055 -10.2181 4.3515 33 1 -1.2029 -10.0485 6.2073 34 1 1.1760 -5.9183 3.1614 35 1 1.4509 -4.6498 4.4327 36 1 1.6996 -3.1744 3.4115 37 1 3.6946 -1.7902 4.1484 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567564_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:32:42 Heat of formation + Delta-G solvation = 57.416034 kcal Electronic energy + Delta-G solvation = -25748.249967 eV Core-core repulsion = 21942.639340 eV Total energy + Delta-G solvation = -3805.610627 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.33907 -40.33329 -39.74870 -38.03883 -37.82596 -36.68455 -34.83545 -31.97770 -31.86321 -30.94230 -27.68664 -27.30619 -25.79557 -24.54363 -22.62986 -21.95851 -21.80705 -20.86934 -20.27624 -19.43914 -18.72730 -18.43081 -17.98435 -17.25893 -16.99114 -16.82854 -16.63485 -15.95661 -15.77311 -15.56226 -15.41649 -15.17513 -14.44102 -14.40222 -14.24710 -14.15258 -13.98884 -13.96403 -13.57296 -13.46493 -13.00774 -12.91561 -12.77170 -12.63846 -12.57850 -12.41407 -12.27257 -12.20716 -11.68503 -11.56140 -11.26824 -10.80245 -10.34609 -10.23153 -9.88986 -9.52886 -5.29920 -0.72297 -0.58974 0.24449 0.53961 0.90967 0.93225 1.03638 1.40180 1.43500 1.72619 1.92127 1.95530 2.68061 2.81186 2.98377 3.03870 3.19492 3.29500 3.40073 3.53252 3.76700 3.84635 3.87176 3.97114 3.98423 4.16298 4.26945 4.29527 4.35529 4.38038 4.52497 4.63071 4.70319 4.71100 4.83397 4.96395 5.00303 5.10573 5.68474 5.73303 6.04603 6.07826 6.78427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.077 4.077 3 Si 0.679 3.321 4 C -0.098 4.098 5 C -0.666 4.666 6 S 2.718 3.282 7 O -0.945 6.945 8 O -0.943 6.943 9 N -1.106 6.106 10 C 0.128 3.872 11 H 0.128 0.872 12 C -0.152 4.152 13 C 0.140 3.860 14 H 0.129 0.871 15 N -0.362 5.362 16 C 0.051 3.949 17 C -0.272 4.272 18 C 0.045 3.955 19 N -0.295 5.295 20 C -0.165 4.165 21 C -0.097 4.097 22 C -0.208 4.208 23 S 0.166 5.834 24 H 0.388 0.612 25 H 0.151 0.849 26 H -0.227 1.227 27 H -0.239 1.239 28 H 0.422 0.578 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.172 0.828 32 H 0.148 0.852 33 H 0.184 0.816 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.154 0.846 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 0.123 1.903 6.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.187 4.187 3 Si 0.575 3.425 4 C -0.219 4.219 5 C -0.765 4.765 6 S 2.803 3.197 7 O -0.934 6.934 8 O -0.933 6.933 9 N -0.864 5.864 10 C 0.019 3.981 11 H 0.146 0.854 12 C -0.193 4.193 13 C 0.037 3.963 14 H 0.147 0.853 15 N -0.145 5.145 16 C -0.095 4.095 17 C -0.301 4.301 18 C -0.141 4.141 19 N -0.115 5.115 20 C -0.206 4.206 21 C -0.125 4.125 22 C -0.344 4.344 23 S 0.430 5.570 24 H 0.238 0.762 25 H 0.168 0.832 26 H -0.150 1.150 27 H -0.162 1.162 28 H 0.258 0.742 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.189 0.811 32 H 0.166 0.834 33 H 0.201 0.799 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.171 0.829 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.841 3.332 1.438 6.877 hybrid contribution -0.622 -2.397 0.500 2.526 sum 5.219 0.935 1.939 5.646 Atomic orbital electron populations 1.86678 1.16355 1.74114 1.55760 1.25064 0.84739 1.12303 0.96633 0.95144 0.90713 0.73251 0.83387 1.24966 0.99434 0.97356 1.00129 1.29835 1.25994 1.10093 1.10531 1.01557 0.73431 0.71896 0.72832 1.93591 1.46440 1.71540 1.81868 1.93599 1.85247 1.84919 1.29529 1.55633 1.88954 1.26091 1.15748 1.22108 0.96191 0.99562 0.80231 0.85411 1.23918 0.99210 0.98481 0.97640 1.22645 0.97979 0.76359 0.99345 0.85323 1.48611 1.29670 1.06419 1.29765 1.22471 0.97122 0.90507 0.99412 1.21568 1.05761 0.97837 1.04961 1.23967 0.96961 0.94723 0.98445 1.77411 1.17462 1.04409 1.12244 1.24173 0.97321 0.99814 0.99262 1.19933 0.95977 1.01492 0.95148 1.25921 1.03428 0.99992 1.05013 1.84270 1.26850 1.26989 1.18844 0.76236 0.83190 1.14996 1.16242 0.74236 0.88757 0.88200 0.81112 0.83413 0.79933 0.87557 0.88649 0.82901 0.80672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.23 9.75 -59.92 -0.58 -1.81 16 2 C -0.08 -0.03 2.34 36.01 0.08 0.06 16 3 Si 0.68 -1.01 31.09 -169.99 -5.28 -6.29 16 4 C -0.10 -0.03 5.77 -36.01 -0.21 -0.24 16 5 C -0.67 -0.30 5.72 -41.21 -0.24 -0.53 16 6 S 2.72 4.70 4.15 -107.50 -0.45 4.25 16 7 O -0.94 -4.03 16.66 -64.69 -1.08 -5.11 16 8 O -0.94 -4.54 16.99 -62.51 -1.06 -5.61 16 9 N -1.11 2.20 5.60 -4.20 -0.02 2.18 16 10 C 0.13 -0.41 2.81 -67.12 -0.19 -0.60 16 11 H 0.13 -0.51 7.68 -51.93 -0.40 -0.91 16 12 C -0.15 0.35 7.68 -25.91 -0.20 0.15 16 13 C 0.14 -0.31 5.03 -67.03 -0.34 -0.65 16 14 H 0.13 -0.37 8.14 -51.93 -0.42 -0.79 16 15 N -0.36 -0.22 3.81 -53.98 -0.21 -0.42 16 16 C 0.05 -0.03 10.70 -17.22 -0.18 -0.21 16 17 C -0.27 -0.10 10.80 -40.02 -0.43 -0.53 16 18 C 0.05 0.07 12.02 -17.37 -0.21 -0.14 16 19 N -0.29 -0.96 12.58 30.62 0.39 -0.57 16 20 C -0.17 0.76 6.28 -25.83 -0.16 0.60 16 21 C -0.10 0.16 9.39 -41.21 -0.39 -0.22 16 22 C -0.21 0.47 11.23 29.04 0.33 0.80 16 23 S 0.17 -0.30 20.85 -107.50 -2.24 -2.54 16 24 H 0.39 -0.13 8.54 45.56 0.39 0.26 16 25 H 0.15 -0.04 7.96 -51.93 -0.41 -0.45 16 26 H -0.23 -0.20 7.11 56.52 0.40 0.20 16 27 H -0.24 0.00 7.11 56.52 0.40 0.40 16 28 H 0.42 -1.54 8.96 -34.47 -0.31 -1.85 16 29 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 30 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 31 H 0.17 -0.66 6.70 -52.48 -0.35 -1.01 16 32 H 0.15 -0.21 8.06 -52.49 -0.42 -0.64 16 33 H 0.18 -0.19 8.06 -52.48 -0.42 -0.61 16 34 H 0.11 -0.58 6.33 -51.93 -0.33 -0.90 16 35 H 0.10 -0.58 6.88 -51.93 -0.36 -0.94 16 36 H 0.15 -0.64 3.48 -52.49 -0.18 -0.83 16 37 H 0.18 -0.83 8.06 -52.49 -0.42 -1.26 16 LS Contribution 330.60 15.07 4.98 4.98 Total: 0.00 -11.64 330.60 -11.38 -23.02 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: -3.69 Total: -10.55 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.13 Total: -1.52 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: 0.16 Total: 1.18 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -2.72 Total: -12.53 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -5.28 Total: -6.29 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -2.69 Total: 1.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -11.64 -11.38 -23.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567564_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.438 kcal (2) G-P(sol) polarization free energy of solvation -11.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds