Wall clock time and date at job start Mon Mar 8 2021 10:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.46992 * 2 1 4 4 C 1.50702 * 109.46735 * 119.99881 * 2 1 3 5 5 C 1.33378 * 125.20866 * 39.62700 * 4 2 1 6 6 S 1.76203 * 122.53674 * 359.95699 * 5 4 2 7 7 O 1.42098 * 106.40420 * 278.11651 * 6 5 4 8 8 O 1.42101 * 106.40352 * 51.03858 * 6 5 4 9 9 N 1.65604 * 107.21936 * 164.57656 * 6 5 4 10 10 C 1.46501 * 119.99887 * 63.31137 * 9 6 5 11 11 H 1.09000 * 112.84613 * 3.76281 * 10 9 6 12 12 C 1.53786 * 113.61003 * 134.95463 * 10 9 6 13 13 C 1.53787 * 87.07603 * 139.98351 * 12 10 9 14 14 H 1.09001 * 113.61668 * 89.11748 * 13 12 10 15 15 N 1.46499 * 113.60801 * 219.93166 * 13 12 10 16 16 C 1.34946 * 126.03810 * 85.00475 * 15 13 12 17 17 C 1.35315 * 107.74772 * 179.97438 * 16 15 13 18 18 C 1.39863 * 107.91953 * 359.97438 * 17 16 15 19 19 N 1.30838 * 108.20319 * 359.74225 * 18 17 16 20 20 C 1.53780 * 113.61494 * 232.56114 * 10 9 6 21 21 C 1.38428 * 114.92571 * 179.97438 * 5 4 2 22 22 C 1.33384 * 114.91641 * 0.02562 * 21 5 4 23 23 S 1.75883 * 109.59605 * 359.97438 * 22 21 5 24 24 H 0.96698 * 114.00109 * 305.72680 * 1 2 3 25 25 H 1.09000 * 109.47297 * 239.99777 * 2 1 3 26 26 H 1.48508 * 109.99961 * 300.00155 * 3 2 1 27 27 H 1.48502 * 110.00050 * 61.31609 * 3 2 1 28 28 H 0.96999 * 119.99778 * 243.31598 * 9 6 5 29 29 H 1.08997 * 113.60885 * 254.52729 * 12 10 9 30 30 H 1.08993 * 113.61786 * 25.43694 * 12 10 9 31 31 H 1.08008 * 126.12444 * 359.97438 * 16 15 13 32 32 H 1.08001 * 126.04159 * 180.02562 * 17 16 15 33 33 H 1.08004 * 125.89522 * 179.97438 * 18 17 16 34 34 H 1.08998 * 113.61371 * 334.57061 * 20 10 9 35 35 H 1.08998 * 113.61333 * 105.47100 * 20 10 9 36 36 H 1.07999 * 122.53884 * 180.02562 * 21 5 4 37 37 H 1.07997 * 125.20010 * 180.27044 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.3962 -1.8147 1.7532 6 16 -0.0111 -2.6096 1.0514 7 8 -1.1489 -1.9002 1.5221 8 8 0.2764 -2.7898 -0.3285 9 7 -0.0986 -4.1253 1.7127 10 6 -0.3165 -4.2848 3.1526 11 1 -0.4696 -3.3351 3.6652 12 6 -1.3691 -5.3502 3.5020 13 6 -0.4473 -5.7681 4.6598 14 1 -0.6352 -5.2244 5.5857 15 7 -0.3728 -7.2179 4.8565 16 6 0.4481 -8.0666 4.2032 17 6 0.2100 -9.3135 4.6719 18 6 -0.7903 -9.2236 5.6453 19 7 -1.1363 -7.9671 5.7610 20 6 0.7192 -5.1936 3.8355 21 6 2.0299 -2.2889 2.8889 22 6 3.0793 -1.5692 3.2887 23 16 3.3131 -0.2102 2.1969 24 1 -0.3933 0.5158 0.7171 25 1 1.7924 -0.5139 -0.8899 26 1 1.5614 2.4679 -1.2085 27 1 1.5878 2.4586 1.2242 28 1 -0.0055 -4.9075 1.1467 29 1 -2.3207 -4.9323 3.8305 30 1 -1.4843 -6.1177 2.7367 31 1 1.1665 -7.7986 3.4426 32 1 0.7055 -10.2181 4.3515 33 1 -1.2029 -10.0485 6.2073 34 1 1.1760 -5.9183 3.1614 35 1 1.4509 -4.6498 4.4327 36 1 1.6996 -3.1744 3.4115 37 1 3.6946 -1.7902 4.1484 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567564_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:32:41 Heat of formation + Delta-G solvation = 52.967094 kcal Electronic energy + Delta-G solvation = -25748.442887 eV Core-core repulsion = 21942.639340 eV Total energy + Delta-G solvation = -3805.803548 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26431 -40.16910 -39.69042 -38.24578 -37.81956 -36.89040 -34.73881 -31.90633 -31.79281 -30.90716 -27.60673 -27.05316 -25.66123 -24.46672 -22.50531 -21.94451 -21.72887 -20.77006 -20.23017 -19.40404 -18.58993 -18.49067 -17.91787 -17.20446 -17.00410 -16.68006 -16.61876 -15.98443 -15.71007 -15.55697 -15.29916 -15.05526 -14.34853 -14.29539 -14.16329 -14.13345 -13.85045 -13.82671 -13.55212 -13.33005 -13.24637 -13.14816 -12.79621 -12.53652 -12.37354 -12.33632 -12.18985 -12.07614 -11.64243 -11.54769 -11.25367 -10.63566 -10.34712 -10.12053 -9.72780 -9.49516 -5.21071 -0.78168 -0.50576 0.36839 0.66343 0.97204 1.01528 1.16369 1.47933 1.54931 1.78315 1.95285 1.96749 2.63752 3.01500 3.04871 3.24739 3.27647 3.51534 3.54390 3.68209 3.93853 3.99438 4.05146 4.12872 4.16070 4.32282 4.41058 4.52085 4.56999 4.61287 4.73096 4.80140 4.86153 4.89118 4.93688 5.14713 5.16441 5.22023 5.75522 5.90218 6.10912 6.17479 6.78635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.098 4.098 3 Si 0.764 3.236 4 C -0.123 4.123 5 C -0.673 4.673 6 S 2.726 3.274 7 O -0.980 6.980 8 O -0.983 6.983 9 N -1.095 6.095 10 C 0.125 3.875 11 H 0.136 0.864 12 C -0.156 4.156 13 C 0.130 3.870 14 H 0.132 0.868 15 N -0.365 5.365 16 C 0.054 3.946 17 C -0.290 4.290 18 C 0.031 3.969 19 N -0.342 5.342 20 C -0.150 4.150 21 C -0.107 4.107 22 C -0.204 4.204 23 S 0.194 5.806 24 H 0.394 0.606 25 H 0.148 0.852 26 H -0.265 1.265 27 H -0.256 1.256 28 H 0.430 0.570 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.206 0.794 32 H 0.162 0.838 33 H 0.196 0.804 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.177 0.823 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.395 0.028 2.854 8.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.207 4.207 3 Si 0.662 3.338 4 C -0.244 4.244 5 C -0.774 4.774 6 S 2.814 3.186 7 O -0.969 6.969 8 O -0.973 6.973 9 N -0.856 5.856 10 C 0.016 3.984 11 H 0.154 0.846 12 C -0.197 4.197 13 C 0.028 3.972 14 H 0.150 0.850 15 N -0.147 5.147 16 C -0.092 4.092 17 C -0.320 4.320 18 C -0.154 4.154 19 N -0.163 5.163 20 C -0.190 4.190 21 C -0.134 4.134 22 C -0.340 4.340 23 S 0.458 5.542 24 H 0.245 0.755 25 H 0.165 0.835 26 H -0.190 1.190 27 H -0.181 1.181 28 H 0.268 0.732 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.222 0.778 32 H 0.180 0.820 33 H 0.213 0.787 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.193 0.807 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.975 3.201 2.385 8.918 hybrid contribution -1.290 -2.380 0.220 2.717 sum 6.684 0.820 2.606 7.221 Atomic orbital electron populations 1.86643 1.17831 1.74706 1.56334 1.25443 0.83893 1.14260 0.97094 0.94242 0.89224 0.70160 0.80194 1.25073 1.00849 0.97826 1.00630 1.29670 1.25687 1.10426 1.11665 1.00846 0.73337 0.72300 0.72090 1.93543 1.48494 1.72747 1.82164 1.93540 1.85822 1.85661 1.32290 1.55313 1.88816 1.25000 1.16485 1.22269 0.96691 1.00024 0.79372 0.84639 1.23934 0.99285 0.98726 0.97729 1.22877 0.99409 0.75279 0.99675 0.84995 1.48824 1.29330 1.07280 1.29275 1.23047 0.96824 0.90081 0.99229 1.21880 1.05950 0.99021 1.05107 1.24347 0.97350 0.94778 0.98951 1.77329 1.19351 1.05409 1.14259 1.24174 0.96696 0.99370 0.98746 1.20151 0.96119 1.02508 0.94611 1.26355 1.03211 0.99070 1.05349 1.84154 1.25013 1.26957 1.18051 0.75500 0.83464 1.18971 1.18052 0.73197 0.89635 0.88629 0.77756 0.82020 0.78704 0.86160 0.86167 0.80652 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.71 9.75 -125.37 -1.22 -4.93 16 2 C -0.10 -0.19 2.34 71.24 0.17 -0.03 16 3 Si 0.76 -1.90 31.09 68.60 2.13 0.23 16 4 C -0.12 -0.08 5.77 24.59 0.14 0.06 16 5 C -0.67 -0.49 5.72 21.22 0.12 -0.37 16 6 S 2.73 12.22 4.15 -56.49 -0.23 11.99 16 7 O -0.98 -10.02 16.66 -120.81 -2.01 -12.04 16 8 O -0.98 -11.27 16.99 -122.90 -2.09 -13.36 16 9 N -1.09 4.48 5.60 -167.19 -0.94 3.55 16 10 C 0.12 -0.91 2.81 45.52 0.13 -0.78 16 11 H 0.14 -1.18 7.68 -2.39 -0.02 -1.20 16 12 C -0.16 0.70 7.68 31.12 0.24 0.94 16 13 C 0.13 -0.67 5.03 45.58 0.23 -0.44 16 14 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 15 N -0.36 -0.30 3.81 -324.70 -1.24 -1.53 16 16 C 0.05 -0.12 10.70 83.54 0.89 0.77 16 17 C -0.29 -0.10 10.80 21.99 0.24 0.13 16 18 C 0.03 0.12 12.02 85.23 1.02 1.14 16 19 N -0.34 -2.48 12.58 -57.02 -0.72 -3.20 16 20 C -0.15 1.71 6.28 31.18 0.20 1.91 16 21 C -0.11 0.56 9.39 21.22 0.20 0.76 16 22 C -0.20 1.46 11.23 66.72 0.75 2.21 16 23 S 0.19 -0.98 20.85 -56.49 -1.18 -2.15 16 24 H 0.39 0.64 8.54 -74.06 -0.63 0.00 16 25 H 0.15 0.20 7.96 -2.39 -0.02 0.18 16 26 H -0.26 -0.86 7.11 99.48 0.71 -0.16 16 27 H -0.26 -0.02 7.11 99.48 0.71 0.69 16 28 H 0.43 -3.22 8.96 -96.75 -0.87 -4.08 16 29 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.21 -2.13 6.70 -2.91 -0.02 -2.15 16 32 H 0.16 -0.58 8.06 -2.91 -0.02 -0.60 16 33 H 0.20 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.12 -1.67 6.33 -2.39 -0.02 -1.69 16 35 H 0.12 -1.90 6.88 -2.39 -0.02 -1.92 16 36 H 0.18 -1.95 3.48 -2.91 -0.01 -1.96 16 37 H 0.21 -2.76 8.06 -2.91 -0.02 -2.78 16 Total: 0.00 -29.03 330.60 -3.48 -32.50 By element: Atomic # 1 Polarization: -17.05 SS G_CDS: -0.31 Total: -17.37 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.33 Total: 6.31 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -2.89 Total: -1.19 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -5.32 Total: -30.33 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.13 Total: 0.23 kcal Atomic # 16 Polarization: 11.25 SS G_CDS: -1.41 Total: 9.83 kcal Total: -29.03 -3.48 -32.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567564_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.471 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds