Wall clock time and date at job start Mon Mar 8 2021 10:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33388 * 125.20432 * 2 1 4 4 C 1.50702 * 122.53438 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47013 * 141.01163 * 4 3 2 6 6 Si 1.86297 * 109.47452 * 21.01084 * 4 3 2 7 7 C 1.38415 * 114.92505 * 179.79488 * 3 2 1 8 8 S 1.76205 * 122.54366 * 180.27291 * 7 3 2 9 9 O 1.42102 * 106.40096 * 192.90376 * 8 7 3 10 10 O 1.42103 * 106.39677 * 325.81889 * 8 7 3 11 11 N 1.65591 * 107.21729 * 79.35872 * 8 7 3 12 12 C 1.46504 * 120.00301 * 63.60165 * 11 8 7 13 13 H 1.09000 * 112.84487 * 345.92900 * 12 11 8 14 14 C 1.53781 * 113.61932 * 117.23189 * 12 11 8 15 15 C 1.53786 * 87.07880 * 89.11697 * 14 12 11 16 16 H 1.08995 * 113.60867 * 139.98412 * 15 14 12 17 17 N 1.46494 * 113.61621 * 270.88719 * 15 14 12 18 18 C 1.34952 * 126.03660 * 302.18914 * 17 15 14 19 19 C 1.35317 * 107.74616 * 179.97438 * 18 17 15 20 20 C 1.39867 * 107.92043 * 359.97438 * 19 18 17 21 21 N 1.30838 * 108.20202 * 359.74167 * 20 19 18 22 22 C 1.53779 * 113.61448 * 214.73380 * 12 11 8 23 23 C 1.33390 * 114.91910 * 0.42528 * 7 3 2 24 24 C 1.50707 * 125.20272 * 179.85837 * 23 7 3 25 25 S 1.75882 * 109.59375 * 359.59904 * 23 7 3 26 26 H 1.09006 * 109.47086 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47297 * 299.99443 * 1 2 3 28 28 H 1.09001 * 109.47393 * 60.00156 * 1 2 3 29 29 H 1.08999 * 109.47425 * 261.00479 * 4 3 2 30 30 H 0.96698 * 113.99957 * 180.02562 * 5 4 3 31 31 H 1.48501 * 110.00155 * 59.99452 * 6 4 3 32 32 H 1.48499 * 110.00371 * 181.31841 * 6 4 3 33 33 H 0.96999 * 120.00456 * 243.59483 * 11 8 7 34 34 H 1.08996 * 113.61811 * 203.67093 * 14 12 11 35 35 H 1.09000 * 113.61016 * 334.57016 * 14 12 11 36 36 H 1.07997 * 126.12865 * 359.95944 * 18 17 15 37 37 H 1.08001 * 126.03880 * 180.02562 * 19 18 17 38 38 H 1.08005 * 125.89764 * 180.02562 * 20 19 18 39 39 H 1.08993 * 113.61556 * 25.42999 * 22 12 11 40 40 H 1.09002 * 113.61041 * 156.33077 * 22 12 11 41 41 H 1.09000 * 109.46917 * 174.70591 * 24 23 7 42 42 H 1.08996 * 109.47026 * 54.70698 * 24 23 7 43 43 H 1.09001 * 109.47265 * 294.70509 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7051 2.4846 0.0006 5 8 2.4941 3.3219 0.8482 6 14 -0.0474 2.4381 0.6309 7 6 3.6379 0.8429 0.0045 8 16 4.8356 2.1353 0.0124 9 8 6.0841 1.5272 -0.2889 10 8 4.2840 3.1981 -0.7528 11 7 4.9487 2.6893 1.5688 12 6 5.4276 1.7999 2.6300 13 1 5.4438 0.7524 2.3290 14 6 6.7341 2.2740 3.2882 15 6 5.8582 3.0656 4.2736 16 1 6.2233 3.0396 5.3003 17 7 5.5375 4.4199 3.8165 18 6 6.4284 5.3828 3.5001 19 6 5.7328 6.4813 3.1253 20 6 4.3701 6.1793 3.2153 21 7 4.2519 4.9419 3.6239 22 6 4.7482 2.0402 3.9884 23 6 3.9750 -0.4476 -0.0008 24 6 5.3861 -0.9770 -0.0007 25 16 2.5210 -1.4371 -0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7157 2.8820 -1.0143 30 1 2.1836 4.2364 0.8969 31 1 -0.0756 1.8981 2.0140 32 1 -0.6324 3.8028 0.6065 33 1 4.6979 3.6026 1.7780 34 1 7.3030 1.4712 3.7572 35 1 7.3444 2.9051 2.6422 36 1 7.5040 5.2929 3.5391 37 1 6.1552 7.4244 2.8114 38 1 3.5561 6.8500 2.9828 39 1 3.7553 2.4826 3.9079 40 1 4.7742 1.1735 4.6489 41 1 5.3667 -2.0631 0.0891 42 1 5.9332 -0.5525 0.8411 43 1 5.8789 -0.6981 -0.9321 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567564_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:32:50 Heat of formation + Delta-G solvation = 63.200117 kcal Electronic energy + Delta-G solvation = -31866.063963 eV Core-core repulsion = 27749.628914 eV Total energy + Delta-G solvation = -4116.435049 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.085 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.37017 -40.15996 -39.90761 -38.21901 -36.98414 -36.55742 -34.68024 -34.06705 -31.88430 -30.91132 -30.82130 -28.03549 -26.92322 -25.91391 -25.79138 -23.11818 -22.57221 -21.74901 -20.68123 -20.35416 -19.71001 -19.01369 -18.62621 -17.99470 -17.93628 -17.26391 -16.99195 -16.64047 -16.47347 -15.67227 -15.37825 -15.26876 -15.02675 -14.92982 -14.80786 -14.68506 -14.49397 -14.31187 -14.14306 -13.96645 -13.73476 -13.64610 -13.37092 -13.26354 -13.24345 -13.03675 -12.72140 -12.64686 -12.58999 -12.47381 -12.20504 -12.04402 -11.70936 -11.52267 -11.39830 -11.37118 -10.54514 -10.40920 -10.24642 -9.91715 -9.46013 -9.37531 -4.69838 -0.49373 -0.29628 0.43363 0.73835 0.93400 1.00478 1.38747 1.50816 1.63054 1.98961 2.00863 2.20398 2.95122 3.04923 3.20565 3.33455 3.46127 3.54353 3.60073 3.76145 3.86574 3.93552 4.01257 4.04752 4.10977 4.15068 4.21046 4.25954 4.40527 4.47771 4.52935 4.55175 4.61799 4.64223 4.69384 4.73157 4.80640 4.91490 4.96570 5.02468 5.06358 5.16325 5.20934 5.28086 5.77130 6.13044 6.24451 6.52185 6.82362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.201 4.201 3 C -0.013 4.013 4 C -0.062 4.062 5 O -0.539 6.539 6 Si 0.649 3.351 7 C -0.673 4.673 8 S 2.722 3.278 9 O -0.967 6.967 10 O -0.946 6.946 11 N -1.078 6.078 12 C 0.134 3.866 13 H 0.100 0.900 14 C -0.159 4.159 15 C 0.129 3.871 16 H 0.104 0.896 17 N -0.357 5.357 18 C 0.056 3.944 19 C -0.273 4.273 20 C 0.042 3.958 21 N -0.290 5.290 22 C -0.145 4.145 23 C -0.060 4.060 24 C -0.107 4.107 25 S 0.163 5.837 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.389 0.611 31 H -0.265 1.265 32 H -0.249 1.249 33 H 0.423 0.577 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.172 0.828 37 H 0.148 0.852 38 H 0.183 0.817 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -3.447 1.749 4.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.319 4.319 3 C -0.024 4.024 4 C -0.174 4.174 5 O -0.347 6.347 6 Si 0.551 3.449 7 C -0.772 4.772 8 S 2.808 3.192 9 O -0.957 6.957 10 O -0.936 6.936 11 N -0.839 5.839 12 C 0.024 3.976 13 H 0.118 0.882 14 C -0.200 4.200 15 C 0.027 3.973 16 H 0.122 0.878 17 N -0.140 5.140 18 C -0.090 4.090 19 C -0.302 4.302 20 C -0.144 4.144 21 N -0.111 5.111 22 C -0.184 4.184 23 C -0.181 4.181 24 C -0.165 4.165 25 S 0.429 5.571 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.239 0.761 31 H -0.191 1.191 32 H -0.175 1.175 33 H 0.262 0.738 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.189 0.811 37 H 0.166 0.834 38 H 0.200 0.800 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.880 -6.272 2.006 6.849 hybrid contribution 0.933 3.098 0.599 3.290 sum -0.948 -3.175 2.605 4.214 Atomic orbital electron populations 1.20237 0.87852 1.03891 1.03987 1.24072 0.99801 0.95380 1.12608 1.17532 0.90381 0.94281 1.00201 1.24532 1.05641 0.88424 0.98790 1.86238 1.55017 1.25200 1.68277 0.94590 0.80046 0.83519 0.86730 1.29606 1.12331 1.13237 1.21990 1.01149 0.72935 0.72882 0.72241 1.93591 1.40781 1.78430 1.82872 1.93540 1.79435 1.53120 1.67501 1.55277 1.80579 1.22943 1.25072 1.21554 0.94057 0.93540 0.88415 0.88248 1.23962 0.97314 1.00639 0.98083 1.22159 0.98670 0.78249 0.98238 0.87787 1.48418 1.04006 1.10350 1.51236 1.22510 0.97050 0.89174 1.00269 1.21568 0.93246 1.00750 1.14652 1.23962 0.97546 0.93696 0.99182 1.77375 0.99871 1.11258 1.22633 1.23552 1.00106 0.98283 0.96475 1.24641 1.00702 0.95123 0.97660 1.20898 0.88159 1.01458 1.06015 1.84288 0.94986 1.07935 1.69867 0.88460 0.88761 0.87712 0.88970 0.76141 1.19130 1.17520 0.73759 0.86632 0.89483 0.81094 0.83449 0.80009 0.88070 0.87320 0.90397 0.88927 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.26 7.94 36.01 0.29 0.54 16 2 C -0.20 -0.13 6.24 -36.00 -0.22 -0.35 16 3 C -0.01 -0.03 5.30 -106.25 -0.56 -0.60 16 4 C -0.06 -0.11 2.03 36.01 0.07 -0.04 16 5 O -0.54 -1.18 7.72 -58.37 -0.45 -1.63 16 6 Si 0.65 0.11 25.48 -169.99 -4.33 -4.22 16 7 C -0.67 -1.95 5.76 -41.21 -0.24 -2.19 16 8 S 2.72 10.88 4.82 -107.50 -0.52 10.37 16 9 O -0.97 -4.98 14.49 -57.17 -0.83 -5.81 16 10 O -0.95 -6.13 15.00 -66.64 -1.00 -7.12 16 11 N -1.08 -2.25 4.61 -4.20 -0.02 -2.27 16 12 C 0.13 -0.03 4.43 -67.12 -0.30 -0.32 16 13 H 0.10 -0.15 6.69 -51.93 -0.35 -0.50 16 14 C -0.16 0.28 7.54 -25.92 -0.20 0.09 16 15 C 0.13 -0.11 4.90 -67.12 -0.33 -0.44 16 16 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 17 N -0.36 -0.44 2.65 -54.08 -0.14 -0.58 16 18 C 0.06 0.03 11.03 -17.22 -0.19 -0.16 16 19 C -0.27 -0.28 10.80 -40.01 -0.43 -0.71 16 20 C 0.04 0.06 12.03 -17.37 -0.21 -0.14 16 21 N -0.29 -0.78 10.37 30.62 0.32 -0.47 16 22 C -0.14 0.11 7.48 -25.92 -0.19 -0.08 16 23 C -0.06 -0.09 6.50 -36.00 -0.23 -0.32 16 24 C -0.11 0.00 8.60 36.01 0.31 0.31 16 25 S 0.16 0.01 23.31 -107.50 -2.51 -2.50 16 26 H 0.10 -0.40 8.14 -51.93 -0.42 -0.83 16 27 H 0.10 -0.21 3.88 -51.93 -0.20 -0.41 16 28 H 0.10 -0.49 6.74 -51.93 -0.35 -0.84 16 29 H 0.09 0.14 7.84 -51.93 -0.41 -0.27 16 30 H 0.39 -0.12 8.74 45.56 0.40 0.28 16 31 H -0.27 -0.85 6.92 56.52 0.39 -0.46 16 32 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 33 H 0.42 1.14 5.61 -34.47 -0.19 0.94 16 34 H 0.12 -0.49 8.14 -51.93 -0.42 -0.91 16 35 H 0.09 -0.07 7.82 -51.93 -0.41 -0.48 16 36 H 0.17 -0.36 8.06 -52.49 -0.42 -0.78 16 37 H 0.15 -0.09 8.06 -52.49 -0.42 -0.51 16 38 H 0.18 -0.19 8.06 -52.48 -0.42 -0.61 16 39 H 0.10 0.17 7.50 -51.93 -0.39 -0.22 16 40 H 0.11 -0.34 8.14 -51.93 -0.42 -0.76 16 41 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 42 H 0.09 -0.07 6.19 -51.93 -0.32 -0.39 16 43 H 0.11 0.09 7.39 -51.93 -0.38 -0.30 16 LS Contribution 356.35 15.07 5.37 5.37 Total: 0.00 -9.95 356.35 -11.74 -21.69 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -5.19 Total: -8.42 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.44 Total: -4.40 kcal Atomic # 7 Polarization: -3.47 SS G_CDS: 0.15 Total: -3.32 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -2.28 Total: -14.57 kcal Atomic # 14 Polarization: 0.11 SS G_CDS: -4.33 Total: -4.22 kcal Atomic # 16 Polarization: 10.89 SS G_CDS: -3.02 Total: 7.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -9.95 -11.74 -21.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567564_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.890 kcal (2) G-P(sol) polarization free energy of solvation -9.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds