Wall clock time and date at job start Mon Mar 8 2021 10:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33388 * 125.20432 * 2 1 4 4 C 1.50702 * 122.53438 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47013 * 141.01163 * 4 3 2 6 6 Si 1.86297 * 109.47452 * 21.01084 * 4 3 2 7 7 C 1.38415 * 114.92505 * 179.79488 * 3 2 1 8 8 S 1.76205 * 122.54366 * 180.27291 * 7 3 2 9 9 O 1.42102 * 106.40096 * 192.90376 * 8 7 3 10 10 O 1.42103 * 106.39677 * 325.81889 * 8 7 3 11 11 N 1.65591 * 107.21729 * 79.35872 * 8 7 3 12 12 C 1.46504 * 120.00301 * 63.60165 * 11 8 7 13 13 H 1.09000 * 112.84487 * 345.92900 * 12 11 8 14 14 C 1.53781 * 113.61932 * 117.23189 * 12 11 8 15 15 C 1.53786 * 87.07880 * 89.11697 * 14 12 11 16 16 H 1.08995 * 113.60867 * 139.98412 * 15 14 12 17 17 N 1.46494 * 113.61621 * 270.88719 * 15 14 12 18 18 C 1.34952 * 126.03660 * 302.18914 * 17 15 14 19 19 C 1.35317 * 107.74616 * 179.97438 * 18 17 15 20 20 C 1.39867 * 107.92043 * 359.97438 * 19 18 17 21 21 N 1.30838 * 108.20202 * 359.74167 * 20 19 18 22 22 C 1.53779 * 113.61448 * 214.73380 * 12 11 8 23 23 C 1.33390 * 114.91910 * 0.42528 * 7 3 2 24 24 C 1.50707 * 125.20272 * 179.85837 * 23 7 3 25 25 S 1.75882 * 109.59375 * 359.59904 * 23 7 3 26 26 H 1.09006 * 109.47086 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47297 * 299.99443 * 1 2 3 28 28 H 1.09001 * 109.47393 * 60.00156 * 1 2 3 29 29 H 1.08999 * 109.47425 * 261.00479 * 4 3 2 30 30 H 0.96698 * 113.99957 * 180.02562 * 5 4 3 31 31 H 1.48501 * 110.00155 * 59.99452 * 6 4 3 32 32 H 1.48499 * 110.00371 * 181.31841 * 6 4 3 33 33 H 0.96999 * 120.00456 * 243.59483 * 11 8 7 34 34 H 1.08996 * 113.61811 * 203.67093 * 14 12 11 35 35 H 1.09000 * 113.61016 * 334.57016 * 14 12 11 36 36 H 1.07997 * 126.12865 * 359.95944 * 18 17 15 37 37 H 1.08001 * 126.03880 * 180.02562 * 19 18 17 38 38 H 1.08005 * 125.89764 * 180.02562 * 20 19 18 39 39 H 1.08993 * 113.61556 * 25.42999 * 22 12 11 40 40 H 1.09002 * 113.61041 * 156.33077 * 22 12 11 41 41 H 1.09000 * 109.46917 * 174.70591 * 24 23 7 42 42 H 1.08996 * 109.47026 * 54.70698 * 24 23 7 43 43 H 1.09001 * 109.47265 * 294.70509 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7051 2.4846 0.0006 5 8 2.4941 3.3219 0.8482 6 14 -0.0474 2.4381 0.6309 7 6 3.6379 0.8429 0.0045 8 16 4.8356 2.1353 0.0124 9 8 6.0841 1.5272 -0.2889 10 8 4.2840 3.1981 -0.7528 11 7 4.9487 2.6893 1.5688 12 6 5.4276 1.7999 2.6300 13 1 5.4438 0.7524 2.3290 14 6 6.7341 2.2740 3.2882 15 6 5.8582 3.0656 4.2736 16 1 6.2233 3.0396 5.3003 17 7 5.5375 4.4199 3.8165 18 6 6.4284 5.3828 3.5001 19 6 5.7328 6.4813 3.1253 20 6 4.3701 6.1793 3.2153 21 7 4.2519 4.9419 3.6239 22 6 4.7482 2.0402 3.9884 23 6 3.9750 -0.4476 -0.0008 24 6 5.3861 -0.9770 -0.0007 25 16 2.5210 -1.4371 -0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7157 2.8820 -1.0143 30 1 2.1836 4.2364 0.8969 31 1 -0.0756 1.8981 2.0140 32 1 -0.6324 3.8028 0.6065 33 1 4.6979 3.6026 1.7780 34 1 7.3030 1.4712 3.7572 35 1 7.3444 2.9051 2.6422 36 1 7.5040 5.2929 3.5391 37 1 6.1552 7.4244 2.8114 38 1 3.5561 6.8500 2.9828 39 1 3.7553 2.4826 3.9079 40 1 4.7742 1.1735 4.6489 41 1 5.3667 -2.0631 0.0891 42 1 5.9332 -0.5525 0.8411 43 1 5.8789 -0.6981 -0.9321 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567564_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:32:49 Heat of formation + Delta-G solvation = 62.248143 kcal Electronic energy + Delta-G solvation = -31866.105243 eV Core-core repulsion = 27749.628914 eV Total energy + Delta-G solvation = -4116.476329 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.085 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37717 -40.21749 -39.88423 -38.49845 -37.14907 -36.91273 -34.67038 -34.14146 -31.92968 -30.86861 -30.83683 -28.10055 -26.81624 -25.92076 -25.78037 -23.19918 -22.59465 -21.78152 -20.82338 -20.36927 -19.78965 -19.12281 -18.77914 -18.07176 -17.94813 -17.41130 -17.07563 -16.66122 -16.53475 -15.87242 -15.40196 -15.29244 -15.08631 -15.00007 -14.82484 -14.63405 -14.50121 -14.24782 -14.11355 -14.06855 -13.70504 -13.62888 -13.46970 -13.32613 -13.25458 -13.16571 -12.90958 -12.83882 -12.67862 -12.59658 -12.28417 -12.03453 -11.68295 -11.64553 -11.48396 -11.43498 -10.64181 -10.46095 -10.29217 -9.94807 -9.49327 -9.41106 -4.74839 -0.64854 -0.42584 0.40893 0.67767 0.83476 0.97028 1.30520 1.55573 1.56062 1.91690 1.92570 2.05475 2.73364 3.12229 3.24730 3.27344 3.39585 3.52419 3.63284 3.81577 3.88730 3.98412 4.00062 4.11674 4.15731 4.21551 4.29666 4.37237 4.48147 4.55224 4.58886 4.64679 4.70094 4.72913 4.74546 4.83568 4.87482 4.90937 4.94888 5.02029 5.09622 5.14165 5.20844 5.31265 5.73519 6.08090 6.17202 6.47769 6.76793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.203 4.203 3 C -0.042 4.042 4 C -0.081 4.081 5 O -0.551 6.551 6 Si 0.743 3.257 7 C -0.687 4.687 8 S 2.726 3.274 9 O -0.986 6.986 10 O -0.981 6.981 11 N -1.077 6.077 12 C 0.116 3.884 13 H 0.111 0.889 14 C -0.148 4.148 15 C 0.121 3.879 16 H 0.123 0.877 17 N -0.360 5.360 18 C 0.051 3.949 19 C -0.289 4.289 20 C 0.028 3.972 21 N -0.318 5.318 22 C -0.140 4.140 23 C -0.071 4.071 24 C -0.112 4.112 25 S 0.202 5.798 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.394 0.606 31 H -0.308 1.308 32 H -0.280 1.280 33 H 0.420 0.580 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.196 0.804 37 H 0.159 0.841 38 H 0.197 0.803 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -5.228 2.296 5.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.321 4.321 3 C -0.052 4.052 4 C -0.191 4.191 5 O -0.361 6.361 6 Si 0.650 3.350 7 C -0.788 4.788 8 S 2.815 3.185 9 O -0.976 6.976 10 O -0.971 6.971 11 N -0.838 5.838 12 C 0.008 3.992 13 H 0.129 0.871 14 C -0.188 4.188 15 C 0.019 3.981 16 H 0.140 0.860 17 N -0.143 5.143 18 C -0.096 4.096 19 C -0.318 4.318 20 C -0.157 4.157 21 N -0.140 5.140 22 C -0.179 4.179 23 C -0.192 4.192 24 C -0.170 4.170 25 S 0.469 5.531 26 H 0.140 0.860 27 H 0.110 0.890 28 H 0.148 0.852 29 H 0.106 0.894 30 H 0.245 0.755 31 H -0.237 1.237 32 H -0.208 1.208 33 H 0.259 0.741 34 H 0.165 0.835 35 H 0.095 0.905 36 H 0.213 0.787 37 H 0.176 0.824 38 H 0.214 0.786 39 H 0.092 0.908 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.932 -8.044 2.531 8.651 hybrid contribution 0.967 3.594 0.470 3.751 sum -0.965 -4.450 3.001 5.454 Atomic orbital electron populations 1.20480 0.85761 1.05633 1.04893 1.24527 1.01427 0.95226 1.10874 1.17702 0.90577 0.94957 1.01985 1.24876 1.07028 0.88419 0.98760 1.86225 1.55726 1.25736 1.68380 0.93663 0.77327 0.80761 0.83274 1.29407 1.12327 1.13331 1.23753 1.00659 0.72737 0.72635 0.72446 1.93559 1.41888 1.78632 1.83481 1.93485 1.79959 1.54682 1.68991 1.55137 1.80751 1.23019 1.24911 1.21890 0.95318 0.93834 0.88161 0.87106 1.24006 0.96456 1.01020 0.97362 1.22429 0.98846 0.77437 0.99372 0.85965 1.48630 1.03617 1.11123 1.50945 1.22973 0.98174 0.88907 0.99514 1.21838 0.93199 1.01609 1.15168 1.24332 0.98492 0.93776 0.99068 1.77324 1.01155 1.11866 1.23687 1.23571 0.98564 0.99140 0.96630 1.24895 1.02064 0.95088 0.97151 1.20995 0.87381 1.02975 1.05664 1.84098 0.93539 1.06761 1.68718 0.86041 0.89024 0.85151 0.89442 0.75522 1.23725 1.20773 0.74128 0.83514 0.90455 0.78699 0.82358 0.78616 0.90818 0.84683 0.88076 0.88365 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.72 7.94 71.24 0.57 1.28 16 2 C -0.20 -0.16 6.24 24.59 0.15 -0.01 16 3 C -0.04 -0.24 5.30 -20.92 -0.11 -0.35 16 4 C -0.08 -0.41 2.03 71.24 0.14 -0.27 16 5 O -0.55 -3.80 7.72 -126.86 -0.98 -4.78 16 6 Si 0.74 0.82 25.48 68.60 1.75 2.57 16 7 C -0.69 -4.74 5.76 21.21 0.12 -4.62 16 8 S 2.73 27.15 4.82 -56.49 -0.27 26.87 16 9 O -0.99 -11.81 14.49 -128.00 -1.86 -13.66 16 10 O -0.98 -15.44 15.00 -118.95 -1.78 -17.22 16 11 N -1.08 -6.25 4.61 -167.19 -0.77 -7.02 16 12 C 0.12 0.00 4.43 45.52 0.20 0.20 16 13 H 0.11 -0.33 6.69 -2.39 -0.02 -0.34 16 14 C -0.15 0.63 7.54 31.12 0.23 0.86 16 15 C 0.12 -0.24 4.90 45.52 0.22 -0.02 16 16 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 17 N -0.36 -1.16 2.65 -325.00 -0.86 -2.02 16 18 C 0.05 0.09 11.03 83.54 0.92 1.01 16 19 C -0.29 -0.91 10.80 21.99 0.24 -0.67 16 20 C 0.03 0.14 12.03 85.24 1.02 1.16 16 21 N -0.32 -2.27 10.37 -57.02 -0.59 -2.86 16 22 C -0.14 0.20 7.48 31.12 0.23 0.43 16 23 C -0.07 -0.22 6.50 24.59 0.16 -0.06 16 24 C -0.11 0.01 8.60 71.24 0.61 0.63 16 25 S 0.20 -0.19 23.31 -56.49 -1.32 -1.50 16 26 H 0.12 -1.31 8.14 -2.38 -0.02 -1.33 16 27 H 0.09 -0.47 3.88 -2.39 -0.01 -0.48 16 28 H 0.13 -1.46 6.74 -2.39 -0.02 -1.48 16 29 H 0.09 0.45 7.84 -2.39 -0.02 0.43 16 30 H 0.39 0.95 8.74 -74.06 -0.65 0.31 16 31 H -0.31 -2.40 6.92 99.48 0.69 -1.71 16 32 H -0.28 -1.57 7.11 99.48 0.71 -0.86 16 33 H 0.42 3.16 5.61 -96.75 -0.54 2.62 16 34 H 0.15 -1.57 8.14 -2.39 -0.02 -1.59 16 35 H 0.08 -0.13 7.82 -2.39 -0.02 -0.15 16 36 H 0.20 -0.87 8.06 -2.91 -0.02 -0.90 16 37 H 0.16 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.20 -0.03 8.06 -2.91 -0.02 -0.06 16 39 H 0.07 0.36 7.50 -2.39 -0.02 0.34 16 40 H 0.14 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.10 -0.16 6.19 -2.39 -0.01 -0.17 16 43 H 0.09 0.23 7.39 -2.39 -0.02 0.21 16 Total: 0.00 -25.51 356.35 -2.05 -27.56 By element: Atomic # 1 Polarization: -7.42 SS G_CDS: -0.09 Total: -7.51 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 4.72 Total: -0.42 kcal Atomic # 7 Polarization: -9.68 SS G_CDS: -2.22 Total: -11.90 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -4.62 Total: -35.66 kcal Atomic # 14 Polarization: 0.82 SS G_CDS: 1.75 Total: 2.57 kcal Atomic # 16 Polarization: 26.96 SS G_CDS: -1.59 Total: 25.37 kcal Total: -25.51 -2.05 -27.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567564_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.806 kcal (2) G-P(sol) polarization free energy of solvation -25.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds