Wall clock time and date at job start Mon Mar 8 2021 10:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86298 * 109.47091 * 2 1 4 4 C 1.50700 * 109.46996 * 120.00166 * 2 1 3 5 5 C 1.33387 * 122.53707 * 75.00090 * 4 2 1 6 6 S 1.76199 * 125.20856 * 359.95405 * 5 4 2 7 7 O 1.42099 * 106.39910 * 336.46152 * 6 5 4 8 8 O 1.42094 * 106.40706 * 203.53854 * 6 5 4 9 9 N 1.65607 * 107.21763 * 89.99779 * 6 5 4 10 10 C 1.46498 * 119.99476 * 65.00293 * 9 6 5 11 11 C 1.53001 * 109.46735 * 165.00186 * 10 9 6 12 12 H 1.08998 * 112.84794 * 316.19088 * 11 10 9 13 13 C 1.53778 * 113.69389 * 87.46692 * 11 10 9 14 14 C 1.53778 * 87.08449 * 139.99094 * 13 11 10 15 15 H 1.09000 * 113.61263 * 89.11673 * 14 13 11 16 16 N 1.46502 * 113.61376 * 220.01807 * 14 13 11 17 17 C 1.34943 * 126.03842 * 12.21350 * 16 14 13 18 18 C 1.35311 * 107.74794 * 179.83951 * 17 16 14 19 19 C 1.39863 * 107.91852 * 0.42070 * 18 17 16 20 20 N 1.30836 * 108.20469 * 359.73723 * 19 18 17 21 21 C 1.53784 * 87.08081 * 334.56700 * 14 13 11 22 22 S 1.75885 * 109.58949 * 180.22179 * 5 4 2 23 23 C 1.75882 * 90.96990 * 359.68456 * 22 5 4 24 24 C 1.33378 * 109.59664 * 0.31681 * 23 22 5 25 25 H 0.96694 * 113.99844 * 299.99994 * 1 2 3 26 26 H 1.09003 * 109.47038 * 240.00286 * 2 1 3 27 27 H 1.48492 * 109.99909 * 178.67965 * 3 2 1 28 28 H 1.48500 * 110.00242 * 300.00236 * 3 2 1 29 29 H 0.96994 * 119.99852 * 245.00478 * 9 6 5 30 30 H 1.08997 * 109.47376 * 45.00041 * 10 9 6 31 31 H 1.09003 * 109.47215 * 285.00067 * 10 9 6 32 32 H 1.08999 * 113.61111 * 254.54157 * 13 11 10 33 33 H 1.08999 * 113.61280 * 25.35540 * 13 11 10 34 34 H 1.08007 * 126.12336 * 359.97438 * 17 16 14 35 35 H 1.08000 * 126.04503 * 180.16192 * 18 17 16 36 36 H 1.08003 * 125.89968 * 179.71375 * 19 18 17 37 37 H 1.09004 * 113.61451 * 270.88641 * 21 14 13 38 38 H 1.08994 * 113.61477 * 139.97943 * 21 14 13 39 39 H 1.08011 * 125.19975 * 180.02562 * 23 22 5 40 40 H 1.07997 * 122.54630 * 179.73447 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8961 -2.0378 1.3571 6 16 1.2747 -3.1576 0.1469 7 8 0.3671 -2.4165 -0.6569 8 8 0.9082 -4.3399 0.8447 9 7 2.5419 -3.5691 -0.8367 10 6 3.6764 -4.3205 -0.2939 11 6 4.5085 -4.8897 -1.4448 12 1 3.8965 -5.3263 -2.2340 13 6 5.5867 -3.9241 -1.9643 14 6 6.5133 -5.1459 -2.0804 15 1 6.4494 -5.6524 -3.0434 16 7 7.8932 -4.8771 -1.6679 17 6 8.3258 -3.7819 -1.0089 18 6 9.6578 -3.9175 -0.8134 19 6 10.0545 -5.1328 -1.3807 20 7 8.9975 -5.7090 -1.8931 21 6 5.6584 -5.8000 -0.9822 22 16 2.5578 -2.4989 2.9202 23 6 2.8626 -0.8138 3.3217 24 6 2.4647 -0.0350 2.3146 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0322 28 1 1.5615 2.4679 -1.2084 29 1 2.5329 -3.3126 -1.7721 30 1 3.3078 -5.1373 0.3266 31 1 4.2963 -3.6572 0.3093 32 1 5.3404 -3.4702 -2.9242 33 1 5.9138 -3.1951 -1.2229 34 1 7.7173 -2.9477 -0.6921 35 1 10.3018 -3.2101 -0.3121 36 1 11.0598 -5.5274 -1.3938 37 1 6.0061 -5.5848 0.0282 38 1 5.4699 -6.8605 -1.1492 39 1 3.3003 -0.4631 4.2447 40 1 2.5517 1.0411 2.3430 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567566_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:02 Heat of formation + Delta-G solvation = 54.009667 kcal Electronic energy + Delta-G solvation = -27387.078134 eV Core-core repulsion = 23425.782176 eV Total energy + Delta-G solvation = -3961.295957 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.31917 -40.24805 -40.14537 -38.12552 -37.01871 -36.78129 -36.12324 -32.53911 -31.51904 -30.97490 -28.43553 -28.02057 -27.13722 -24.58862 -24.40195 -22.28416 -21.82216 -21.48666 -20.45788 -20.03354 -19.53150 -18.76473 -18.36567 -18.12440 -17.36274 -16.95590 -16.60770 -16.29625 -15.82771 -15.77695 -15.59875 -15.47529 -15.21598 -15.10360 -14.73226 -14.29899 -14.05032 -14.03411 -13.80920 -13.70879 -13.50284 -13.42534 -13.02839 -13.01329 -12.95473 -12.71652 -12.54838 -12.40907 -12.14327 -11.91850 -11.86109 -11.77047 -11.51585 -10.81731 -10.54413 -10.48240 -10.33860 -9.75413 -9.51968 -5.17869 -0.88779 -0.58507 0.21414 0.55580 0.94658 1.09058 1.14727 1.50956 1.51881 1.85947 1.92262 1.95761 2.66153 2.94859 3.06110 3.29883 3.35097 3.38086 3.45853 3.51847 3.70771 3.84283 3.89812 3.94477 4.00104 4.06301 4.17269 4.26498 4.31871 4.38737 4.43248 4.49466 4.55096 4.61682 4.70910 4.74201 4.74864 4.85005 4.93943 5.04128 5.10651 5.73406 5.74230 6.06752 6.58734 6.79781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.504 6.504 2 C -0.069 4.069 3 Si 0.690 3.310 4 C 0.005 3.995 5 C -0.777 4.777 6 S 2.707 3.293 7 O -0.918 6.918 8 O -0.950 6.950 9 N -1.116 6.116 10 C 0.125 3.875 11 C -0.113 4.113 12 H 0.112 0.888 13 C -0.143 4.143 14 C 0.137 3.863 15 H 0.124 0.876 16 N -0.363 5.363 17 C 0.051 3.949 18 C -0.273 4.273 19 C 0.044 3.956 20 N -0.296 5.296 21 C -0.138 4.138 22 S 0.224 5.776 23 C -0.163 4.163 24 C -0.163 4.163 25 H 0.372 0.628 26 H 0.117 0.883 27 H -0.254 1.254 28 H -0.247 1.247 29 H 0.421 0.579 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.170 0.830 35 H 0.147 0.853 36 H 0.183 0.817 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.179 0.821 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 4.490 3.533 6.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.307 6.307 2 C -0.182 4.182 3 Si 0.590 3.410 4 C -0.013 4.013 5 C -0.978 4.978 6 S 2.792 3.208 7 O -0.908 6.908 8 O -0.940 6.940 9 N -0.877 5.877 10 C -0.001 4.001 11 C -0.133 4.133 12 H 0.130 0.870 13 C -0.182 4.182 14 C 0.035 3.965 15 H 0.142 0.858 16 N -0.145 5.145 17 C -0.095 4.095 18 C -0.303 4.303 19 C -0.142 4.142 20 N -0.117 5.117 21 C -0.178 4.178 22 S 0.491 5.509 23 C -0.301 4.301 24 C -0.193 4.193 25 H 0.218 0.782 26 H 0.134 0.866 27 H -0.178 1.178 28 H -0.171 1.171 29 H 0.256 0.744 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.187 0.813 35 H 0.165 0.835 36 H 0.200 0.800 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.197 0.803 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.956 1.966 2.825 3.959 hybrid contribution 0.881 2.064 -0.267 2.260 sum 2.837 4.030 2.558 5.553 Atomic orbital electron populations 1.86833 1.14817 1.81089 1.47986 1.25117 0.87169 1.10296 0.95633 0.94829 0.80881 0.77315 0.87949 1.19280 0.93474 0.91518 0.97030 1.35833 1.27567 1.14259 1.20127 1.01801 0.72522 0.73329 0.73176 1.93742 1.58145 1.72111 1.66757 1.93623 1.80292 1.45475 1.74634 1.55635 1.38102 1.70558 1.23451 1.21340 0.87134 0.95624 0.95984 1.22586 0.94825 0.97225 0.98657 0.86985 1.23593 0.94649 0.96439 1.03489 1.22858 0.75019 0.98813 0.99815 0.85789 1.48727 1.07109 1.14883 1.43751 1.22441 0.96128 0.92761 0.98158 1.21555 0.94833 1.01281 1.12616 1.23950 0.98307 0.94483 0.97421 1.77398 0.92971 1.17457 1.23866 1.23498 0.94053 1.00756 0.99464 1.84408 1.54653 1.05137 1.06710 1.26250 1.03113 0.97252 1.03502 1.20230 1.03953 1.01549 0.93538 0.78208 0.86594 1.17821 1.17128 0.74434 0.89380 0.91359 0.89376 0.88582 0.81284 0.83487 0.79982 0.88741 0.89346 0.80325 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 -0.57 11.12 -56.67 -0.63 -1.20 16 2 C -0.07 0.02 1.79 36.01 0.06 0.09 16 3 Si 0.69 -1.41 30.25 -169.99 -5.14 -6.56 16 4 C 0.01 0.00 5.13 -106.25 -0.55 -0.55 16 5 C -0.78 -0.23 6.54 29.04 0.19 -0.04 16 6 S 2.71 4.26 5.66 -107.50 -0.61 3.65 16 7 O -0.92 -3.86 14.29 -66.03 -0.94 -4.80 16 8 O -0.95 -4.35 17.38 -57.17 -0.99 -5.35 16 9 N -1.12 2.22 6.00 -10.61 -0.06 2.15 16 10 C 0.13 -0.37 6.06 -4.04 -0.02 -0.39 16 11 C -0.11 0.44 3.78 -89.81 -0.34 0.10 16 12 H 0.11 -0.50 8.14 -51.93 -0.42 -0.93 16 13 C -0.14 0.56 6.98 -25.92 -0.18 0.38 16 14 C 0.14 -0.22 5.04 -67.12 -0.34 -0.56 16 15 H 0.12 -0.21 8.14 -51.93 -0.42 -0.64 16 16 N -0.36 -0.43 3.81 -54.07 -0.21 -0.63 16 17 C 0.05 0.00 10.69 -17.23 -0.18 -0.18 16 18 C -0.27 -0.20 10.80 -40.02 -0.43 -0.63 16 19 C 0.04 0.08 12.02 -17.37 -0.21 -0.12 16 20 N -0.30 -1.10 12.58 30.62 0.39 -0.71 16 21 C -0.14 0.37 7.44 -25.91 -0.19 0.17 16 22 S 0.22 -0.22 23.21 -107.50 -2.50 -2.71 16 23 C -0.16 0.47 11.23 29.03 0.33 0.79 16 24 C -0.16 0.42 8.74 -41.21 -0.36 0.06 16 25 H 0.37 -1.21 8.70 45.56 0.40 -0.81 16 26 H 0.12 -0.02 7.17 -51.93 -0.37 -0.39 16 27 H -0.25 0.07 7.11 56.52 0.40 0.48 16 28 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 29 H 0.42 -1.60 8.65 -34.47 -0.30 -1.89 16 30 H 0.09 -0.20 7.75 -51.93 -0.40 -0.61 16 31 H 0.07 -0.28 7.85 -51.93 -0.41 -0.69 16 32 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 33 H 0.10 -0.43 6.08 -51.93 -0.32 -0.74 16 34 H 0.17 -0.53 6.69 -52.48 -0.35 -0.88 16 35 H 0.15 -0.17 8.06 -52.49 -0.42 -0.59 16 36 H 0.18 -0.14 8.06 -52.48 -0.42 -0.56 16 37 H 0.09 -0.22 8.10 -51.93 -0.42 -0.64 16 38 H 0.09 -0.22 8.14 -51.93 -0.42 -0.65 16 39 H 0.18 -0.99 8.06 -52.48 -0.42 -1.41 16 40 H 0.16 -0.80 5.73 -52.49 -0.30 -1.10 16 LS Contribution 358.21 15.07 5.40 5.40 Total: 0.00 -12.30 358.21 -12.16 -24.46 By element: Atomic # 1 Polarization: -8.17 SS G_CDS: -4.63 Total: -12.80 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.23 Total: -0.90 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: 0.12 Total: 0.80 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -2.57 Total: -11.35 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.14 Total: -6.56 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -3.10 Total: 0.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -12.30 -12.16 -24.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.468 kcal (2) G-P(sol) polarization free energy of solvation -12.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds