Wall clock time and date at job start Mon Mar 8 2021 10:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86298 * 109.47091 * 2 1 4 4 C 1.50700 * 109.46996 * 120.00166 * 2 1 3 5 5 C 1.33387 * 122.53707 * 75.00090 * 4 2 1 6 6 S 1.76199 * 125.20856 * 359.95405 * 5 4 2 7 7 O 1.42099 * 106.39910 * 336.46152 * 6 5 4 8 8 O 1.42094 * 106.40706 * 203.53854 * 6 5 4 9 9 N 1.65607 * 107.21763 * 89.99779 * 6 5 4 10 10 C 1.46498 * 119.99476 * 65.00293 * 9 6 5 11 11 C 1.53001 * 109.46735 * 165.00186 * 10 9 6 12 12 H 1.08998 * 112.84794 * 316.19088 * 11 10 9 13 13 C 1.53778 * 113.69389 * 87.46692 * 11 10 9 14 14 C 1.53778 * 87.08449 * 139.99094 * 13 11 10 15 15 H 1.09000 * 113.61263 * 89.11673 * 14 13 11 16 16 N 1.46502 * 113.61376 * 220.01807 * 14 13 11 17 17 C 1.34943 * 126.03842 * 12.21350 * 16 14 13 18 18 C 1.35311 * 107.74794 * 179.83951 * 17 16 14 19 19 C 1.39863 * 107.91852 * 0.42070 * 18 17 16 20 20 N 1.30836 * 108.20469 * 359.73723 * 19 18 17 21 21 C 1.53784 * 87.08081 * 334.56700 * 14 13 11 22 22 S 1.75885 * 109.58949 * 180.22179 * 5 4 2 23 23 C 1.75882 * 90.96990 * 359.68456 * 22 5 4 24 24 C 1.33378 * 109.59664 * 0.31681 * 23 22 5 25 25 H 0.96694 * 113.99844 * 299.99994 * 1 2 3 26 26 H 1.09003 * 109.47038 * 240.00286 * 2 1 3 27 27 H 1.48492 * 109.99909 * 178.67965 * 3 2 1 28 28 H 1.48500 * 110.00242 * 300.00236 * 3 2 1 29 29 H 0.96994 * 119.99852 * 245.00478 * 9 6 5 30 30 H 1.08997 * 109.47376 * 45.00041 * 10 9 6 31 31 H 1.09003 * 109.47215 * 285.00067 * 10 9 6 32 32 H 1.08999 * 113.61111 * 254.54157 * 13 11 10 33 33 H 1.08999 * 113.61280 * 25.35540 * 13 11 10 34 34 H 1.08007 * 126.12336 * 359.97438 * 17 16 14 35 35 H 1.08000 * 126.04503 * 180.16192 * 18 17 16 36 36 H 1.08003 * 125.89968 * 179.71375 * 19 18 17 37 37 H 1.09004 * 113.61451 * 270.88641 * 21 14 13 38 38 H 1.08994 * 113.61477 * 139.97943 * 21 14 13 39 39 H 1.08011 * 125.19975 * 180.02562 * 23 22 5 40 40 H 1.07997 * 122.54630 * 179.73447 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.8961 -2.0378 1.3571 6 16 1.2747 -3.1576 0.1469 7 8 0.3671 -2.4165 -0.6569 8 8 0.9082 -4.3399 0.8447 9 7 2.5419 -3.5691 -0.8367 10 6 3.6764 -4.3205 -0.2939 11 6 4.5085 -4.8897 -1.4448 12 1 3.8965 -5.3263 -2.2340 13 6 5.5867 -3.9241 -1.9643 14 6 6.5133 -5.1459 -2.0804 15 1 6.4494 -5.6524 -3.0434 16 7 7.8932 -4.8771 -1.6679 17 6 8.3258 -3.7819 -1.0089 18 6 9.6578 -3.9175 -0.8134 19 6 10.0545 -5.1328 -1.3807 20 7 8.9975 -5.7090 -1.8931 21 6 5.6584 -5.8000 -0.9822 22 16 2.5578 -2.4989 2.9202 23 6 2.8626 -0.8138 3.3217 24 6 2.4647 -0.0350 2.3146 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0322 28 1 1.5615 2.4679 -1.2084 29 1 2.5329 -3.3126 -1.7721 30 1 3.3078 -5.1373 0.3266 31 1 4.2963 -3.6572 0.3093 32 1 5.3404 -3.4702 -2.9242 33 1 5.9138 -3.1951 -1.2229 34 1 7.7173 -2.9477 -0.6921 35 1 10.3018 -3.2101 -0.3121 36 1 11.0598 -5.5274 -1.3938 37 1 6.0061 -5.5848 0.0282 38 1 5.4699 -6.8605 -1.1492 39 1 3.3003 -0.4631 4.2447 40 1 2.5517 1.0411 2.3430 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567566_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:01 Heat of formation + Delta-G solvation = 49.523257 kcal Electronic energy + Delta-G solvation = -27387.272679 eV Core-core repulsion = 23425.782176 eV Total energy + Delta-G solvation = -3961.490503 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28321 -40.08841 -40.03264 -38.30291 -37.06972 -36.88668 -36.01254 -32.51088 -31.37345 -30.98594 -28.30097 -27.95607 -26.89522 -24.48447 -24.24393 -22.19495 -21.80129 -21.44194 -20.31894 -19.97983 -19.44128 -18.72547 -18.34482 -18.12228 -17.24851 -16.82467 -16.55744 -16.21900 -15.83252 -15.70310 -15.51989 -15.45005 -15.08082 -14.99739 -14.62995 -14.20432 -13.92791 -13.88747 -13.74509 -13.62968 -13.40210 -13.30743 -13.24520 -13.18679 -12.87793 -12.74259 -12.46694 -12.21420 -12.10796 -11.79615 -11.69950 -11.64315 -11.48100 -10.66687 -10.42694 -10.39499 -10.37343 -9.63194 -9.52328 -5.01747 -0.83606 -0.56350 0.31631 0.74437 0.94639 1.24338 1.31029 1.58977 1.65559 1.92222 1.95638 1.98076 2.60784 3.14651 3.29396 3.35773 3.52162 3.54299 3.62427 3.64788 3.85505 4.00462 4.07283 4.12266 4.20849 4.27190 4.36633 4.38923 4.54664 4.58064 4.64605 4.72171 4.75500 4.77189 4.86589 4.92566 4.93110 4.95830 5.12901 5.15494 5.27798 5.73462 5.95047 6.15006 6.76185 6.82009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.091 4.091 3 Si 0.791 3.209 4 C 0.010 3.990 5 C -0.796 4.796 6 S 2.717 3.283 7 O -0.952 6.952 8 O -0.989 6.989 9 N -1.106 6.106 10 C 0.120 3.880 11 C -0.101 4.101 12 H 0.119 0.881 13 C -0.132 4.132 14 C 0.123 3.877 15 H 0.120 0.880 16 N -0.366 5.366 17 C 0.053 3.947 18 C -0.290 4.290 19 C 0.031 3.969 20 N -0.344 5.344 21 C -0.137 4.137 22 S 0.202 5.798 23 C -0.144 4.144 24 C -0.170 4.170 25 H 0.388 0.612 26 H 0.107 0.893 27 H -0.268 1.268 28 H -0.298 1.298 29 H 0.429 0.571 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.202 0.798 35 H 0.163 0.837 36 H 0.197 0.803 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.211 0.789 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 6.431 4.733 8.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.202 4.202 3 Si 0.694 3.306 4 C -0.009 4.009 5 C -0.999 4.999 6 S 2.805 3.195 7 O -0.942 6.942 8 O -0.979 6.979 9 N -0.869 5.869 10 C -0.005 4.005 11 C -0.122 4.122 12 H 0.137 0.863 13 C -0.170 4.170 14 C 0.022 3.978 15 H 0.137 0.863 16 N -0.149 5.149 17 C -0.093 4.093 18 C -0.319 4.319 19 C -0.154 4.154 20 N -0.166 5.166 21 C -0.176 4.176 22 S 0.468 5.532 23 C -0.282 4.282 24 C -0.199 4.199 25 H 0.237 0.763 26 H 0.124 0.876 27 H -0.194 1.194 28 H -0.226 1.226 29 H 0.267 0.733 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.218 0.782 35 H 0.181 0.819 36 H 0.214 0.786 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.228 0.772 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.613 3.862 4.023 6.158 hybrid contribution 0.677 1.475 -0.644 1.746 sum 3.290 5.337 3.379 7.122 Atomic orbital electron populations 1.86786 1.15835 1.81737 1.49319 1.25504 0.86688 1.12288 0.95696 0.93673 0.78121 0.73456 0.85380 1.19435 0.92864 0.91210 0.97367 1.35491 1.29500 1.14431 1.20507 1.01016 0.72794 0.72694 0.73022 1.93695 1.60179 1.72611 1.67718 1.93570 1.81554 1.47327 1.75481 1.55322 1.37568 1.70492 1.23550 1.21492 0.86886 0.95738 0.96429 1.22498 0.94396 0.96894 0.98378 0.86306 1.23596 0.93270 0.95789 1.04352 1.23115 0.74302 1.00511 0.99900 0.86261 1.48955 1.07363 1.14868 1.43672 1.22992 0.96381 0.92953 0.96981 1.21874 0.95612 1.01310 1.13082 1.24350 0.98762 0.95081 0.97189 1.77318 0.94235 1.19311 1.25735 1.23472 0.94297 1.00724 0.99099 1.84512 1.55018 1.07305 1.06319 1.26645 1.01662 0.95532 1.04331 1.20499 1.03613 1.03031 0.92729 0.76348 0.87559 1.19390 1.22595 0.73323 0.90225 0.89702 0.88348 0.87447 0.78164 0.81895 0.78594 0.88936 0.89817 0.77199 0.79652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.52 11.12 -128.48 -1.43 -2.95 16 2 C -0.09 0.07 1.79 71.24 0.13 0.20 16 3 Si 0.79 -4.12 30.25 68.60 2.07 -2.04 16 4 C 0.01 -0.02 5.13 -20.92 -0.11 -0.13 16 5 C -0.80 -0.57 6.54 66.72 0.44 -0.14 16 6 S 2.72 12.16 5.66 -56.49 -0.32 11.84 16 7 O -0.95 -9.69 14.29 -119.53 -1.71 -11.40 16 8 O -0.99 -10.98 17.38 -128.00 -2.22 -13.20 16 9 N -1.11 3.84 6.00 -187.49 -1.12 2.71 16 10 C 0.12 -0.71 6.06 86.38 0.52 -0.19 16 11 C -0.10 0.82 3.78 -10.27 -0.04 0.78 16 12 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 13 C -0.13 1.16 6.98 31.12 0.22 1.37 16 14 C 0.12 -0.38 5.04 45.52 0.23 -0.15 16 15 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 16 N -0.37 -0.95 3.81 -324.99 -1.24 -2.19 16 17 C 0.05 -0.04 10.69 83.54 0.89 0.85 16 18 C -0.29 -0.35 10.80 21.99 0.24 -0.11 16 19 C 0.03 0.14 12.02 85.23 1.02 1.17 16 20 N -0.34 -2.95 12.58 -57.03 -0.72 -3.66 16 21 C -0.14 0.68 7.44 31.12 0.23 0.91 16 22 S 0.20 -0.49 23.21 -56.49 -1.31 -1.80 16 23 C -0.14 1.18 11.23 66.72 0.75 1.93 16 24 C -0.17 1.27 8.74 21.21 0.19 1.46 16 25 H 0.39 -2.48 8.70 -74.06 -0.64 -3.12 16 26 H 0.11 0.04 7.17 -2.39 -0.02 0.03 16 27 H -0.27 0.73 7.11 99.48 0.71 1.44 16 28 H -0.30 -0.95 7.11 99.48 0.71 -0.25 16 29 H 0.43 -3.12 8.65 -96.75 -0.84 -3.95 16 30 H 0.08 -0.30 7.75 -2.39 -0.02 -0.32 16 31 H 0.08 -0.77 7.85 -2.39 -0.02 -0.79 16 32 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H 0.11 -1.17 6.08 -2.39 -0.01 -1.19 16 34 H 0.20 -1.69 6.69 -2.91 -0.02 -1.71 16 35 H 0.16 -0.50 8.06 -2.91 -0.02 -0.53 16 36 H 0.20 -0.11 8.06 -2.91 -0.02 -0.14 16 37 H 0.09 -0.41 8.10 -2.39 -0.02 -0.43 16 38 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.21 -3.12 8.06 -2.91 -0.02 -3.15 16 40 H 0.19 -2.58 5.73 -2.91 -0.02 -2.59 16 Total: 0.00 -30.65 358.21 -3.63 -34.28 By element: Atomic # 1 Polarization: -19.19 SS G_CDS: -0.34 Total: -19.53 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.71 Total: 7.95 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -3.08 Total: -3.14 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -5.36 Total: -27.55 kcal Atomic # 14 Polarization: -4.12 SS G_CDS: 2.07 Total: -2.04 kcal Atomic # 16 Polarization: 11.67 SS G_CDS: -1.63 Total: 10.04 kcal Total: -30.65 -3.63 -34.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.800 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds