Wall clock time and date at job start Mon Mar 8 2021 10:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.47493 * 2 1 4 4 C 1.50703 * 109.46958 * 240.00088 * 2 1 3 5 5 C 1.33397 * 125.20070 * 319.13878 * 4 2 1 6 6 S 1.76195 * 122.53909 * 359.97438 * 5 4 2 7 7 O 1.42096 * 106.40550 * 314.13273 * 6 5 4 8 8 O 1.42104 * 106.40238 * 181.20893 * 6 5 4 9 9 N 1.65605 * 107.21857 * 67.67122 * 6 5 4 10 10 C 1.46502 * 119.99765 * 63.83184 * 9 6 5 11 11 C 1.53003 * 109.47113 * 165.49780 * 10 9 6 12 12 H 1.09000 * 112.90151 * 43.74719 * 11 10 9 13 13 C 1.53781 * 113.61209 * 174.99667 * 11 10 9 14 14 C 1.53782 * 87.07616 * 139.98248 * 13 11 10 15 15 H 1.09001 * 113.61717 * 89.19853 * 14 13 11 16 16 N 1.46507 * 113.61218 * 220.01665 * 14 13 11 17 17 C 1.34949 * 126.03500 * 83.47410 * 16 14 13 18 18 C 1.35313 * 107.74222 * 180.24822 * 17 16 14 19 19 C 1.39869 * 107.92381 * 359.63597 * 18 17 16 20 20 N 1.30837 * 108.20098 * 0.36692 * 19 18 17 21 21 C 1.53780 * 87.17341 * 334.60761 * 14 13 11 22 22 C 1.38425 * 114.91968 * 180.24919 * 5 4 2 23 23 C 1.33396 * 114.91945 * 359.48699 * 22 5 4 24 24 S 1.75876 * 125.20586 * 139.11160 * 4 2 1 25 25 H 0.96699 * 113.99711 * 300.00121 * 1 2 3 26 26 H 1.08998 * 109.47017 * 120.00618 * 2 1 3 27 27 H 1.48504 * 109.99747 * 178.68378 * 3 2 1 28 28 H 1.48495 * 109.99750 * 300.00089 * 3 2 1 29 29 H 0.96991 * 119.99902 * 243.83076 * 9 6 5 30 30 H 1.09002 * 109.47428 * 45.49454 * 10 9 6 31 31 H 1.09009 * 109.46971 * 285.49627 * 10 9 6 32 32 H 1.08996 * 113.61358 * 25.43452 * 13 11 10 33 33 H 1.08999 * 113.61558 * 254.52435 * 13 11 10 34 34 H 1.07999 * 126.12428 * 359.97438 * 17 16 14 35 35 H 1.07999 * 126.03823 * 179.77394 * 18 17 16 36 36 H 1.08001 * 125.90088 * 180.14090 * 19 18 17 37 37 H 1.09004 * 113.60870 * 139.94366 * 21 14 13 38 38 H 1.09002 * 113.61587 * 270.83696 * 21 14 13 39 39 H 1.07995 * 122.54166 * 179.72843 * 22 5 4 40 40 H 1.07997 * 125.20461 * 180.20525 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.4103 -1.8279 -1.7398 6 16 0.0256 -2.6430 -1.0170 7 8 0.2776 -2.6998 0.3803 8 8 -0.2200 -3.7964 -1.8100 9 7 -1.2857 -1.6512 -1.2156 10 6 -1.7693 -1.3372 -2.5624 11 6 -3.1672 -0.7220 -2.4718 12 1 -3.2536 0.0197 -1.6778 13 6 -3.7182 -0.2428 -3.8252 14 6 -5.0800 -0.8008 -3.3792 15 1 -5.6901 -0.0802 -2.8346 16 7 -5.8171 -1.4754 -4.4507 17 6 -5.6519 -2.7558 -4.8437 18 6 -6.5141 -2.9897 -5.8600 19 6 -7.2367 -1.8145 -6.0906 20 7 -6.8176 -0.9052 -5.2484 21 6 -4.3013 -1.7631 -2.4668 22 6 2.0438 -2.3018 -2.8757 23 6 3.0725 -1.5633 -3.2950 24 16 3.2935 -0.1927 -2.2152 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5139 0.8899 27 1 3.5347 1.7701 0.0321 28 1 1.5616 2.4678 -1.2085 29 1 -1.7334 -1.2782 -0.4403 30 1 -1.8121 -2.2509 -3.1553 31 1 -1.0902 -0.6282 -3.0362 32 1 -3.2908 -0.7660 -4.6805 33 1 -3.7075 0.8409 -3.9420 34 1 -4.9533 -3.4652 -4.4253 35 1 -6.6263 -3.9202 -6.3967 36 1 -8.0051 -1.6798 -6.8375 37 1 -4.7608 -1.9049 -1.4886 38 1 -4.0338 -2.7027 -2.9501 39 1 1.7267 -3.1991 -3.3861 40 1 3.6799 -1.7770 -4.1621 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567566_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:06 Heat of formation + Delta-G solvation = 56.338685 kcal Electronic energy + Delta-G solvation = -27665.704901 eV Core-core repulsion = 23704.509937 eV Total energy + Delta-G solvation = -3961.194964 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.21425 -40.11135 -39.60753 -38.26772 -37.51340 -36.69712 -35.81503 -32.40807 -32.05571 -30.87474 -28.23057 -27.55922 -27.00741 -24.53630 -24.25017 -22.17704 -21.81028 -21.60180 -20.45814 -19.76821 -19.04393 -18.73068 -18.51458 -18.09105 -17.68746 -17.01862 -16.88086 -16.24829 -15.90216 -15.52918 -15.46220 -15.25912 -15.09223 -15.01505 -14.53483 -14.44782 -14.23820 -13.91623 -13.78194 -13.52237 -13.39395 -13.28514 -13.02865 -12.98726 -12.89521 -12.76319 -12.65069 -12.29397 -12.22261 -11.88647 -11.81892 -11.68173 -11.42894 -10.94491 -10.37877 -10.24479 -10.17903 -9.83837 -9.42517 -5.42253 -0.64616 -0.45795 0.23508 0.58668 0.90406 1.04047 1.09286 1.36698 1.61046 1.67738 2.04561 2.13785 2.74193 2.97934 3.08414 3.19741 3.41480 3.45585 3.46617 3.58700 3.85144 4.01047 4.02021 4.09143 4.15178 4.18376 4.27337 4.34589 4.45700 4.50463 4.57346 4.61170 4.67708 4.72674 4.82012 4.84865 4.91922 4.97281 5.07356 5.17914 5.20540 5.83053 6.12440 6.16782 6.19342 6.88554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.066 4.066 3 Si 0.688 3.312 4 C -0.053 4.053 5 C -0.664 4.664 6 S 2.724 3.276 7 O -0.953 6.953 8 O -0.964 6.964 9 N -1.088 6.088 10 C 0.133 3.867 11 C -0.107 4.107 12 H 0.110 0.890 13 C -0.140 4.140 14 C 0.136 3.864 15 H 0.123 0.877 16 N -0.363 5.363 17 C 0.053 3.947 18 C -0.275 4.275 19 C 0.044 3.956 20 N -0.299 5.299 21 C -0.142 4.142 22 C -0.076 4.076 23 C -0.210 4.210 24 S 0.134 5.866 25 H 0.396 0.604 26 H 0.110 0.890 27 H -0.237 1.237 28 H -0.237 1.237 29 H 0.421 0.579 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.182 0.818 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 4.094 2.327 4.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.178 4.178 3 Si 0.586 3.414 4 C -0.173 4.173 5 C -0.762 4.762 6 S 2.809 3.191 7 O -0.943 6.943 8 O -0.954 6.954 9 N -0.851 5.851 10 C 0.007 3.993 11 C -0.127 4.127 12 H 0.128 0.872 13 C -0.179 4.179 14 C 0.034 3.966 15 H 0.141 0.859 16 N -0.145 5.145 17 C -0.093 4.093 18 C -0.304 4.304 19 C -0.142 4.142 20 N -0.120 5.120 21 C -0.181 4.181 22 C -0.104 4.104 23 C -0.345 4.345 24 S 0.397 5.603 25 H 0.246 0.754 26 H 0.127 0.873 27 H -0.161 1.161 28 H -0.160 1.160 29 H 0.258 0.742 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.199 0.801 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.178 0.822 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.848 5.981 2.090 6.947 hybrid contribution -0.481 -1.851 -0.695 2.035 sum 2.368 4.130 1.395 4.961 Atomic orbital electron populations 1.86335 1.16180 1.82133 1.50681 1.24448 0.86653 1.11085 0.95654 0.94471 0.82055 0.76965 0.87944 1.23703 0.98684 0.96189 0.98769 1.30015 1.25305 1.10000 1.10889 1.01134 0.72391 0.72495 0.73094 1.93563 1.84755 1.86102 1.29848 1.93584 1.84471 1.45347 1.71962 1.55218 1.46641 1.69629 1.13600 1.21188 0.94660 1.00316 0.83156 1.22558 0.93017 0.98402 0.98767 0.87226 1.23496 0.94237 1.02609 0.97556 1.22888 0.90881 0.96369 0.86445 0.85912 1.48740 1.29418 1.08625 1.27698 1.22503 1.01256 0.87718 0.97835 1.21560 1.03552 1.01087 1.04193 1.23935 1.00130 0.91522 0.98643 1.77372 1.04672 1.22572 1.07342 1.23629 0.95740 0.98269 1.00432 1.19814 0.95062 1.01144 0.94401 1.25921 1.04143 0.99430 1.05034 1.84504 1.29393 1.27064 1.19318 0.75359 0.87267 1.16097 1.15995 0.74177 0.90358 0.91587 0.88917 0.89711 0.81040 0.83480 0.80060 0.89381 0.88441 0.82189 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.14 7.75 -50.47 -0.39 1.75 16 2 C -0.07 0.12 2.15 36.01 0.08 0.20 16 3 Si 0.69 -2.05 31.15 -169.99 -5.30 -7.34 16 4 C -0.05 -0.05 5.77 -36.00 -0.21 -0.26 16 5 C -0.66 -1.11 5.75 -41.20 -0.24 -1.34 16 6 S 2.72 4.91 4.91 -107.50 -0.53 4.38 16 7 O -0.95 -3.68 16.51 -64.05 -1.06 -4.74 16 8 O -0.96 -4.44 16.86 -57.17 -0.96 -5.40 16 9 N -1.09 2.06 4.21 -10.61 -0.04 2.01 16 10 C 0.13 -0.32 6.04 -4.04 -0.02 -0.35 16 11 C -0.11 0.40 3.79 -89.72 -0.34 0.06 16 12 H 0.11 -0.56 8.13 -51.93 -0.42 -0.98 16 13 C -0.14 0.31 7.44 -25.92 -0.19 0.12 16 14 C 0.14 -0.15 5.02 -67.11 -0.34 -0.49 16 15 H 0.12 -0.18 8.14 -51.93 -0.42 -0.60 16 16 N -0.36 -0.69 3.81 -54.07 -0.21 -0.89 16 17 C 0.05 0.05 10.69 -17.22 -0.18 -0.13 16 18 C -0.27 -0.44 10.80 -40.01 -0.43 -0.87 16 19 C 0.04 0.11 12.03 -17.37 -0.21 -0.10 16 20 N -0.30 -1.27 12.58 30.62 0.39 -0.88 16 21 C -0.14 0.41 7.01 -25.83 -0.18 0.23 16 22 C -0.08 -0.10 9.70 -41.21 -0.40 -0.50 16 23 C -0.21 -0.07 11.23 29.04 0.33 0.26 16 24 S 0.13 0.10 20.82 -107.50 -2.24 -2.14 16 25 H 0.40 -3.47 8.74 45.56 0.40 -3.08 16 26 H 0.11 -0.26 7.95 -51.93 -0.41 -0.67 16 27 H -0.24 0.14 7.11 56.52 0.40 0.54 16 28 H -0.24 0.05 7.11 56.52 0.40 0.45 16 29 H 0.42 -1.69 7.49 -34.47 -0.26 -1.95 16 30 H 0.08 -0.15 7.50 -51.93 -0.39 -0.54 16 31 H 0.07 -0.16 8.14 -51.92 -0.42 -0.58 16 32 H 0.09 -0.14 8.10 -51.93 -0.42 -0.56 16 33 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.17 -0.31 6.69 -52.49 -0.35 -0.66 16 35 H 0.15 -0.04 8.06 -52.49 -0.42 -0.46 16 36 H 0.18 -0.04 8.06 -52.49 -0.42 -0.46 16 37 H 0.09 -0.31 8.14 -51.93 -0.42 -0.74 16 38 H 0.10 -0.27 6.08 -51.93 -0.32 -0.58 16 39 H 0.16 0.05 7.74 -52.49 -0.41 -0.35 16 40 H 0.18 -0.37 8.06 -52.49 -0.42 -0.79 16 LS Contribution 355.40 15.07 5.36 5.36 Total: 0.00 -11.65 355.40 -12.06 -23.71 By element: Atomic # 1 Polarization: -7.91 SS G_CDS: -4.73 Total: -12.64 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.34 Total: -3.16 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: 0.13 Total: 0.23 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -2.41 Total: -8.40 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: -5.30 Total: -7.34 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -2.77 Total: 2.24 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -11.65 -12.06 -23.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.047 kcal (2) G-P(sol) polarization free energy of solvation -11.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds