Wall clock time and date at job start Mon Mar 8 2021 10:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.47493 * 2 1 4 4 C 1.50703 * 109.46958 * 240.00088 * 2 1 3 5 5 C 1.33397 * 125.20070 * 319.13878 * 4 2 1 6 6 S 1.76195 * 122.53909 * 359.97438 * 5 4 2 7 7 O 1.42096 * 106.40550 * 314.13273 * 6 5 4 8 8 O 1.42104 * 106.40238 * 181.20893 * 6 5 4 9 9 N 1.65605 * 107.21857 * 67.67122 * 6 5 4 10 10 C 1.46502 * 119.99765 * 63.83184 * 9 6 5 11 11 C 1.53003 * 109.47113 * 165.49780 * 10 9 6 12 12 H 1.09000 * 112.90151 * 43.74719 * 11 10 9 13 13 C 1.53781 * 113.61209 * 174.99667 * 11 10 9 14 14 C 1.53782 * 87.07616 * 139.98248 * 13 11 10 15 15 H 1.09001 * 113.61717 * 89.19853 * 14 13 11 16 16 N 1.46507 * 113.61218 * 220.01665 * 14 13 11 17 17 C 1.34949 * 126.03500 * 83.47410 * 16 14 13 18 18 C 1.35313 * 107.74222 * 180.24822 * 17 16 14 19 19 C 1.39869 * 107.92381 * 359.63597 * 18 17 16 20 20 N 1.30837 * 108.20098 * 0.36692 * 19 18 17 21 21 C 1.53780 * 87.17341 * 334.60761 * 14 13 11 22 22 C 1.38425 * 114.91968 * 180.24919 * 5 4 2 23 23 C 1.33396 * 114.91945 * 359.48699 * 22 5 4 24 24 S 1.75876 * 125.20586 * 139.11160 * 4 2 1 25 25 H 0.96699 * 113.99711 * 300.00121 * 1 2 3 26 26 H 1.08998 * 109.47017 * 120.00618 * 2 1 3 27 27 H 1.48504 * 109.99747 * 178.68378 * 3 2 1 28 28 H 1.48495 * 109.99750 * 300.00089 * 3 2 1 29 29 H 0.96991 * 119.99902 * 243.83076 * 9 6 5 30 30 H 1.09002 * 109.47428 * 45.49454 * 10 9 6 31 31 H 1.09009 * 109.46971 * 285.49627 * 10 9 6 32 32 H 1.08996 * 113.61358 * 25.43452 * 13 11 10 33 33 H 1.08999 * 113.61558 * 254.52435 * 13 11 10 34 34 H 1.07999 * 126.12428 * 359.97438 * 17 16 14 35 35 H 1.07999 * 126.03823 * 179.77394 * 18 17 16 36 36 H 1.08001 * 125.90088 * 180.14090 * 19 18 17 37 37 H 1.09004 * 113.60870 * 139.94366 * 21 14 13 38 38 H 1.09002 * 113.61587 * 270.83696 * 21 14 13 39 39 H 1.07995 * 122.54166 * 179.72843 * 22 5 4 40 40 H 1.07997 * 125.20461 * 180.20525 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.4103 -1.8279 -1.7398 6 16 0.0256 -2.6430 -1.0170 7 8 0.2776 -2.6998 0.3803 8 8 -0.2200 -3.7964 -1.8100 9 7 -1.2857 -1.6512 -1.2156 10 6 -1.7693 -1.3372 -2.5624 11 6 -3.1672 -0.7220 -2.4718 12 1 -3.2536 0.0197 -1.6778 13 6 -3.7182 -0.2428 -3.8252 14 6 -5.0800 -0.8008 -3.3792 15 1 -5.6901 -0.0802 -2.8346 16 7 -5.8171 -1.4754 -4.4507 17 6 -5.6519 -2.7558 -4.8437 18 6 -6.5141 -2.9897 -5.8600 19 6 -7.2367 -1.8145 -6.0906 20 7 -6.8176 -0.9052 -5.2484 21 6 -4.3013 -1.7631 -2.4668 22 6 2.0438 -2.3018 -2.8757 23 6 3.0725 -1.5633 -3.2950 24 16 3.2935 -0.1927 -2.2152 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5139 0.8899 27 1 3.5347 1.7701 0.0321 28 1 1.5616 2.4678 -1.2085 29 1 -1.7334 -1.2782 -0.4403 30 1 -1.8121 -2.2509 -3.1553 31 1 -1.0902 -0.6282 -3.0362 32 1 -3.2908 -0.7660 -4.6805 33 1 -3.7075 0.8409 -3.9420 34 1 -4.9533 -3.4652 -4.4253 35 1 -6.6263 -3.9202 -6.3967 36 1 -8.0051 -1.6798 -6.8375 37 1 -4.7608 -1.9049 -1.4886 38 1 -4.0338 -2.7027 -2.9501 39 1 1.7267 -3.1991 -3.3861 40 1 3.6799 -1.7770 -4.1621 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567566_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:06 Heat of formation + Delta-G solvation = 53.468879 kcal Electronic energy + Delta-G solvation = -27665.829345 eV Core-core repulsion = 23704.509937 eV Total energy + Delta-G solvation = -3961.319408 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24110 -39.98880 -39.55258 -38.39433 -37.39388 -36.91114 -35.72859 -32.43130 -31.99971 -30.95826 -28.13322 -27.51618 -26.81082 -24.48254 -24.21135 -22.15550 -21.85260 -21.61429 -20.40646 -19.78176 -18.92872 -18.70556 -18.46769 -18.01748 -17.74060 -16.96258 -16.77204 -16.12486 -15.93380 -15.53963 -15.44261 -15.22707 -15.09647 -14.93488 -14.47420 -14.41157 -14.19702 -13.83445 -13.77937 -13.53883 -13.34683 -13.23889 -13.20219 -13.09487 -12.85840 -12.72543 -12.68056 -12.17000 -12.11642 -11.88696 -11.73284 -11.62161 -11.39506 -10.78656 -10.34957 -10.25634 -10.19006 -9.83543 -9.49883 -5.20178 -0.68595 -0.52725 0.22117 0.56973 0.96335 1.00338 1.12780 1.56268 1.63326 1.86013 1.93819 2.12732 2.72558 3.09456 3.23557 3.37324 3.46637 3.61197 3.63993 3.72855 3.91770 4.05087 4.05943 4.21053 4.24392 4.36564 4.40978 4.48142 4.58455 4.65077 4.66458 4.73593 4.78031 4.80525 4.89874 4.90904 5.02459 5.05308 5.07397 5.15181 5.39816 5.76260 6.17509 6.37424 6.77747 6.78188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.076 4.076 3 Si 0.777 3.223 4 C -0.060 4.060 5 C -0.676 4.676 6 S 2.736 3.264 7 O -0.976 6.976 8 O -0.996 6.996 9 N -1.073 6.073 10 C 0.130 3.870 11 C -0.090 4.090 12 H 0.132 0.868 13 C -0.137 4.137 14 C 0.123 3.877 15 H 0.125 0.875 16 N -0.366 5.366 17 C 0.051 3.949 18 C -0.291 4.291 19 C 0.031 3.969 20 N -0.342 5.342 21 C -0.138 4.138 22 C -0.094 4.094 23 C -0.208 4.208 24 S 0.119 5.881 25 H 0.418 0.582 26 H 0.117 0.883 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.433 0.567 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.197 0.803 35 H 0.162 0.838 36 H 0.199 0.801 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.164 0.836 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 4.536 3.201 5.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.187 4.187 3 Si 0.678 3.322 4 C -0.181 4.181 5 C -0.775 4.775 6 S 2.822 3.178 7 O -0.966 6.966 8 O -0.986 6.986 9 N -0.838 5.838 10 C 0.004 3.996 11 C -0.110 4.110 12 H 0.150 0.850 13 C -0.177 4.177 14 C 0.022 3.978 15 H 0.143 0.857 16 N -0.148 5.148 17 C -0.095 4.095 18 C -0.320 4.320 19 C -0.154 4.154 20 N -0.163 5.163 21 C -0.176 4.176 22 C -0.122 4.122 23 C -0.343 4.343 24 S 0.381 5.619 25 H 0.273 0.727 26 H 0.135 0.865 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.273 0.727 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.214 0.786 35 H 0.179 0.821 36 H 0.215 0.785 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.181 0.819 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.756 6.416 3.011 7.604 hybrid contribution -0.447 -1.953 -0.999 2.238 sum 2.309 4.463 2.012 5.413 Atomic orbital electron populations 1.86275 1.14896 1.82688 1.52316 1.24616 0.87905 1.11569 0.94597 0.93495 0.78800 0.74326 0.85553 1.24109 0.98363 0.96129 0.99459 1.30003 1.25666 1.10472 1.11376 1.00499 0.72722 0.72430 0.72152 1.93523 1.85321 1.86650 1.31092 1.93542 1.85068 1.47508 1.72501 1.54886 1.45394 1.69144 1.14425 1.21270 0.95433 1.00297 0.82602 1.22501 0.91715 0.98337 0.98493 0.85023 1.23457 0.93622 1.02580 0.98017 1.23196 0.91057 0.97203 0.86363 0.85746 1.49002 1.29013 1.08982 1.27818 1.22975 1.01227 0.87831 0.97507 1.21870 1.03805 1.01512 1.04817 1.24341 1.00550 0.91720 0.98747 1.77289 1.06314 1.24008 1.08719 1.23651 0.95471 0.98031 1.00463 1.19985 0.95689 1.01680 0.94820 1.26194 1.03922 0.98794 1.05353 1.84563 1.29838 1.27602 1.19851 0.72702 0.86545 1.19731 1.19944 0.72712 0.90945 0.91337 0.89855 0.89534 0.78594 0.82053 0.78466 0.88243 0.88568 0.81881 0.78554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 5.07 7.75 -134.41 -1.04 4.03 16 2 C -0.08 0.33 2.15 71.24 0.15 0.49 16 3 Si 0.78 -4.97 31.15 68.60 2.14 -2.83 16 4 C -0.06 -0.12 5.77 24.59 0.14 0.03 16 5 C -0.68 -2.49 5.75 21.22 0.12 -2.37 16 6 S 2.74 10.33 4.91 -56.49 -0.28 10.05 16 7 O -0.98 -7.53 16.51 -121.42 -2.00 -9.53 16 8 O -1.00 -9.92 16.86 -128.00 -2.16 -12.07 16 9 N -1.07 4.94 4.21 -187.47 -0.79 4.15 16 10 C 0.13 -0.72 6.04 86.38 0.52 -0.20 16 11 C -0.09 0.78 3.79 -10.21 -0.04 0.74 16 12 H 0.13 -1.68 8.13 -2.39 -0.02 -1.70 16 13 C -0.14 0.67 7.44 31.12 0.23 0.90 16 14 C 0.12 -0.30 5.02 45.52 0.23 -0.07 16 15 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 16 N -0.37 -1.52 3.81 -324.98 -1.24 -2.75 16 17 C 0.05 0.10 10.69 83.54 0.89 1.00 16 18 C -0.29 -1.01 10.80 21.99 0.24 -0.77 16 19 C 0.03 0.19 12.03 85.24 1.02 1.21 16 20 N -0.34 -3.23 12.58 -57.02 -0.72 -3.95 16 21 C -0.14 0.95 7.01 31.18 0.22 1.16 16 22 C -0.09 -0.30 9.70 21.22 0.21 -0.09 16 23 C -0.21 -0.19 11.23 66.72 0.75 0.56 16 24 S 0.12 0.22 20.82 -56.49 -1.18 -0.95 16 25 H 0.42 -8.27 8.74 -74.06 -0.65 -8.92 16 26 H 0.12 -0.65 7.95 -2.39 -0.02 -0.67 16 27 H -0.27 0.22 7.11 99.48 0.71 0.93 16 28 H -0.27 0.07 7.11 99.48 0.71 0.78 16 29 H 0.43 -4.17 7.49 -96.75 -0.73 -4.90 16 30 H 0.07 -0.28 7.50 -2.39 -0.02 -0.30 16 31 H 0.07 -0.37 8.14 -2.38 -0.02 -0.39 16 32 H 0.08 -0.22 8.10 -2.39 -0.02 -0.24 16 33 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.20 -0.83 6.69 -2.91 -0.02 -0.85 16 35 H 0.16 -0.09 8.06 -2.91 -0.02 -0.12 16 36 H 0.20 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.10 -0.61 6.08 -2.39 -0.01 -0.62 16 39 H 0.16 0.28 7.74 -2.91 -0.02 0.26 16 40 H 0.20 -0.88 8.06 -2.91 -0.02 -0.90 16 Total: 0.00 -27.82 355.40 -2.81 -30.63 By element: Atomic # 1 Polarization: -19.11 SS G_CDS: -0.24 Total: -19.34 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.69 Total: 2.57 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -2.74 Total: -2.55 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -5.21 Total: -17.58 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.14 Total: -2.83 kcal Atomic # 16 Polarization: 10.55 SS G_CDS: -1.45 Total: 9.10 kcal Total: -27.82 -2.81 -30.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.102 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds