Wall clock time and date at job start Mon Mar 8 2021 10:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86306 * 109.46965 * 2 1 4 4 C 1.50702 * 109.47362 * 119.99776 * 2 1 3 5 5 C 1.33389 * 125.20010 * 64.99905 * 4 2 1 6 6 C 1.38427 * 114.92214 * 179.97438 * 5 4 2 7 7 S 1.76199 * 122.54072 * 179.97438 * 6 5 4 8 8 O 1.42096 * 106.40321 * 336.45684 * 7 6 5 9 9 O 1.42108 * 106.39883 * 203.53693 * 7 6 5 10 10 N 1.65597 * 107.22117 * 89.99842 * 7 6 5 11 11 C 1.46499 * 119.99926 * 64.72196 * 10 7 6 12 12 C 1.53004 * 109.47094 * 165.27799 * 11 10 7 13 13 H 1.08993 * 112.84832 * 316.19644 * 12 11 10 14 14 C 1.53786 * 113.61338 * 87.50479 * 12 11 10 15 15 C 1.53777 * 87.07803 * 139.98216 * 14 12 11 16 16 H 1.09003 * 113.69463 * 89.12973 * 15 14 12 17 17 N 1.46506 * 113.61040 * 220.01400 * 15 14 12 18 18 C 1.34945 * 126.03736 * 12.21926 * 17 15 14 19 19 C 1.35312 * 107.74669 * 179.83744 * 18 17 15 20 20 C 1.39867 * 107.91944 * 0.42016 * 19 18 17 21 21 N 1.30835 * 108.20470 * 359.73793 * 20 19 18 22 22 C 1.53779 * 87.08341 * 334.56257 * 15 14 12 23 23 C 1.33390 * 114.91796 * 0.24797 * 6 5 4 24 24 S 1.75878 * 125.20476 * 244.96241 * 4 2 1 25 25 H 0.96698 * 114.00518 * 60.00203 * 1 2 3 26 26 H 1.09002 * 109.47152 * 240.00075 * 2 1 3 27 27 H 1.48494 * 109.99864 * 298.68099 * 3 2 1 28 28 H 1.48497 * 110.00071 * 60.00064 * 3 2 1 29 29 H 1.07999 * 122.53888 * 359.97438 * 5 4 2 30 30 H 0.97001 * 120.00224 * 245.00409 * 10 7 6 31 31 H 1.09007 * 109.47241 * 285.27714 * 11 10 7 32 32 H 1.08995 * 109.47308 * 45.27753 * 11 10 7 33 33 H 1.08996 * 113.60930 * 254.52922 * 14 12 11 34 34 H 1.08999 * 113.61517 * 25.43292 * 14 12 11 35 35 H 1.08003 * 126.12490 * 359.97438 * 18 17 15 36 36 H 1.08006 * 126.04290 * 180.15817 * 19 18 17 37 37 H 1.08005 * 125.90203 * 179.71946 * 20 19 18 38 38 H 1.08993 * 113.61571 * 270.88382 * 22 15 14 39 39 H 1.09000 * 113.61006 * 139.98250 * 22 15 14 40 40 H 1.08001 * 125.20245 * 179.75605 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7534 -2.0051 1.4974 6 6 2.3064 -2.4360 2.6910 7 16 2.1901 -4.1058 3.2412 8 8 1.0539 -4.6631 2.5950 9 8 2.3436 -4.0745 4.6536 10 7 3.5087 -4.9112 2.6454 11 6 4.8550 -4.5415 3.0893 12 6 5.8423 -5.6416 2.6944 13 1 5.4616 -6.6433 2.8934 14 6 6.4220 -5.4706 1.2803 15 6 7.7705 -5.9248 1.8634 16 1 7.9189 -7.0043 1.8344 17 7 8.9174 -5.1787 1.3397 18 6 8.8612 -4.0394 0.6188 19 6 10.1309 -3.6692 0.3327 20 6 10.9922 -4.6199 0.8900 21 7 10.2660 -5.5252 1.4939 22 6 7.2679 -5.4083 3.2218 23 6 2.9289 -1.4900 3.3959 24 16 2.8428 0.0407 2.5338 25 1 -0.3934 0.4416 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5878 2.4585 -1.2242 28 1 1.5614 2.4679 1.2085 29 1 1.2184 -2.6671 0.8326 30 1 3.3900 -5.6251 1.9995 31 1 5.1484 -3.6036 2.6175 32 1 4.8600 -4.4205 4.1725 33 1 6.0055 -6.1651 0.5508 34 1 6.4230 -4.4381 0.9307 35 1 7.9636 -3.5155 0.3249 36 1 10.4268 -2.7963 -0.2303 37 1 12.0706 -4.6088 0.8316 38 1 7.5001 -4.3589 3.4030 39 1 7.5343 -6.0526 4.0596 40 1 3.4136 -1.6413 4.3491 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567566_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:10 Heat of formation + Delta-G solvation = 48.814238 kcal Electronic energy + Delta-G solvation = -26697.071971 eV Core-core repulsion = 22735.550723 eV Total energy + Delta-G solvation = -3961.521248 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.29966 -40.23183 -39.47626 -38.26099 -37.75786 -36.88165 -36.09834 -32.52012 -32.05668 -30.95479 -28.41107 -27.28031 -27.11719 -24.91594 -24.56306 -22.23515 -21.74656 -21.25988 -20.49750 -20.09557 -19.09735 -18.83283 -18.66880 -18.20353 -17.80478 -17.31467 -16.90660 -16.33640 -15.89540 -15.80174 -15.55582 -15.48979 -15.14447 -14.70942 -14.39344 -14.36302 -14.19340 -14.03445 -14.00364 -13.74597 -13.48408 -13.41827 -13.16284 -13.06978 -12.97868 -12.92287 -12.66478 -12.50347 -12.39794 -11.91644 -11.84825 -11.65128 -11.49603 -10.80364 -10.71295 -10.32112 -10.26323 -9.88467 -9.49959 -5.25453 -0.79491 -0.53425 0.25333 0.52351 0.90720 0.96743 1.09131 1.38905 1.53056 1.74037 1.97315 1.97633 2.67577 2.96982 3.06349 3.08044 3.26773 3.35867 3.42702 3.59789 3.72772 3.77410 3.86452 3.96470 4.05954 4.09604 4.17494 4.23942 4.33914 4.40821 4.45373 4.50991 4.59020 4.64070 4.73491 4.76684 4.85804 4.87049 5.02293 5.05942 5.12635 5.75498 5.76106 6.08985 6.22502 6.81644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.035 4.035 3 Si 0.646 3.354 4 C -0.183 4.183 5 C -0.043 4.043 6 C -0.685 4.685 7 S 2.710 3.290 8 O -0.950 6.950 9 O -0.952 6.952 10 N -1.114 6.114 11 C 0.127 3.873 12 C -0.113 4.113 13 H 0.111 0.889 14 C -0.142 4.142 15 C 0.136 3.864 16 H 0.123 0.877 17 N -0.363 5.363 18 C 0.052 3.948 19 C -0.274 4.274 20 C 0.044 3.956 21 N -0.297 5.297 22 C -0.139 4.139 23 C -0.090 4.090 24 S 0.169 5.831 25 H 0.384 0.616 26 H 0.089 0.911 27 H -0.236 1.236 28 H -0.235 1.235 29 H 0.156 0.844 30 H 0.421 0.579 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.183 0.817 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 2.746 -3.877 6.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.147 4.147 3 Si 0.545 3.455 4 C -0.300 4.300 5 C -0.072 4.072 6 C -0.785 4.785 7 S 2.796 3.204 8 O -0.940 6.940 9 O -0.941 6.941 10 N -0.875 5.875 11 C 0.000 4.000 12 C -0.133 4.133 13 H 0.129 0.871 14 C -0.181 4.181 15 C 0.034 3.966 16 H 0.141 0.859 17 N -0.145 5.145 18 C -0.094 4.094 19 C -0.303 4.303 20 C -0.142 4.142 21 N -0.118 5.118 22 C -0.178 4.178 23 C -0.229 4.229 24 S 0.433 5.567 25 H 0.233 0.767 26 H 0.107 0.893 27 H -0.159 1.159 28 H -0.158 1.158 29 H 0.174 0.826 30 H 0.257 0.743 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.188 0.812 36 H 0.165 0.835 37 H 0.200 0.800 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.351 3.439 -1.679 5.087 hybrid contribution -1.321 -0.380 -1.996 2.424 sum 2.030 3.059 -3.675 5.195 Atomic orbital electron populations 1.86625 1.17141 1.80050 1.50047 1.24032 0.84758 1.10081 0.95867 0.95403 0.91625 0.75158 0.83363 1.23791 1.08134 0.97177 1.00900 1.19580 0.97492 0.95310 0.94788 1.30005 1.15573 1.25992 1.06938 1.01594 0.72338 0.72747 0.73684 1.93621 1.47066 1.76696 1.76636 1.93614 1.85833 1.86543 1.28150 1.55522 1.20331 1.50284 1.61357 1.21333 0.80537 0.97359 1.00735 1.22585 0.94149 1.00525 0.96058 0.87051 1.23592 0.93306 1.03556 0.97601 1.22868 0.81160 0.97374 0.95174 0.85874 1.48734 1.05122 1.19192 1.41436 1.22454 0.99967 0.89972 0.97037 1.21561 0.91726 1.04948 1.12071 1.23950 1.00490 0.92864 0.96898 1.77399 0.86594 1.23764 1.24030 1.23494 0.93804 1.03302 0.97185 1.25936 0.98836 0.95874 1.02270 1.84411 1.49904 1.10543 1.11842 0.76691 0.89325 1.15930 1.15842 0.82650 0.74344 0.91223 0.89407 0.89367 0.88453 0.81153 0.83471 0.80036 0.88751 0.89450 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.23 12.86 -35.23 -0.45 -0.68 16 2 C -0.04 0.04 2.95 36.01 0.11 0.15 16 3 Si 0.65 -1.21 30.98 -169.99 -5.27 -6.47 16 4 C -0.18 -0.03 5.73 -36.00 -0.21 -0.24 16 5 C -0.04 -0.03 9.59 -41.21 -0.40 -0.42 16 6 C -0.69 0.02 5.86 -41.21 -0.24 -0.23 16 7 S 2.71 1.22 5.80 -107.50 -0.62 0.60 16 8 O -0.95 -3.67 17.63 -57.17 -1.01 -4.68 16 9 O -0.95 -3.04 17.12 -57.17 -0.98 -4.02 16 10 N -1.11 3.64 6.00 -10.61 -0.06 3.58 16 11 C 0.13 -0.55 6.05 -4.04 -0.02 -0.57 16 12 C -0.11 0.55 3.78 -89.80 -0.34 0.21 16 13 H 0.11 -0.59 8.14 -51.93 -0.42 -1.01 16 14 C -0.14 0.68 6.98 -25.92 -0.18 0.50 16 15 C 0.14 -0.32 5.04 -67.12 -0.34 -0.66 16 16 H 0.12 -0.28 8.14 -51.93 -0.42 -0.70 16 17 N -0.36 -0.19 3.81 -54.07 -0.21 -0.39 16 18 C 0.05 -0.04 10.69 -17.23 -0.18 -0.22 16 19 C -0.27 -0.03 10.80 -40.02 -0.43 -0.46 16 20 C 0.04 0.06 12.02 -17.37 -0.21 -0.15 16 21 N -0.30 -0.95 12.58 30.62 0.39 -0.57 16 22 C -0.14 0.48 7.44 -25.92 -0.19 0.29 16 23 C -0.09 0.10 10.70 29.04 0.31 0.41 16 24 S 0.17 -0.18 20.60 -107.50 -2.21 -2.39 16 25 H 0.38 -1.47 8.74 45.56 0.40 -1.07 16 26 H 0.09 -0.30 7.96 -51.93 -0.41 -0.71 16 27 H -0.24 0.09 7.11 56.52 0.40 0.49 16 28 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 29 H 0.16 0.05 7.97 -52.49 -0.42 -0.37 16 30 H 0.42 -2.05 8.65 -34.47 -0.30 -2.35 16 31 H 0.07 -0.40 7.84 -51.93 -0.41 -0.81 16 32 H 0.09 -0.35 7.76 -51.93 -0.40 -0.75 16 33 H 0.09 -0.46 8.14 -51.93 -0.42 -0.89 16 34 H 0.10 -0.54 6.07 -51.93 -0.32 -0.85 16 35 H 0.17 -0.70 6.68 -52.48 -0.35 -1.05 16 36 H 0.15 -0.26 8.06 -52.48 -0.42 -0.68 16 37 H 0.18 -0.21 8.06 -52.48 -0.42 -0.63 16 38 H 0.09 -0.30 8.10 -51.93 -0.42 -0.72 16 39 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 40 H 0.19 -0.63 8.00 -52.49 -0.42 -1.05 16 LS Contribution 365.68 15.07 5.51 5.51 Total: 0.00 -12.64 365.68 -12.03 -24.66 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: -4.78 Total: -13.74 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.33 Total: -1.40 kcal Atomic # 7 Polarization: 2.50 SS G_CDS: 0.12 Total: 2.61 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -2.44 Total: -9.39 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.27 Total: -6.47 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.84 Total: -1.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -12.64 -12.03 -24.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.476 kcal (2) G-P(sol) polarization free energy of solvation -12.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds