Wall clock time and date at job start Mon Mar 8 2021 10:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86306 * 109.46965 * 2 1 4 4 C 1.50702 * 109.47362 * 119.99776 * 2 1 3 5 5 C 1.33389 * 125.20010 * 64.99905 * 4 2 1 6 6 C 1.38427 * 114.92214 * 179.97438 * 5 4 2 7 7 S 1.76199 * 122.54072 * 179.97438 * 6 5 4 8 8 O 1.42096 * 106.40321 * 336.45684 * 7 6 5 9 9 O 1.42108 * 106.39883 * 203.53693 * 7 6 5 10 10 N 1.65597 * 107.22117 * 89.99842 * 7 6 5 11 11 C 1.46499 * 119.99926 * 64.72196 * 10 7 6 12 12 C 1.53004 * 109.47094 * 165.27799 * 11 10 7 13 13 H 1.08993 * 112.84832 * 316.19644 * 12 11 10 14 14 C 1.53786 * 113.61338 * 87.50479 * 12 11 10 15 15 C 1.53777 * 87.07803 * 139.98216 * 14 12 11 16 16 H 1.09003 * 113.69463 * 89.12973 * 15 14 12 17 17 N 1.46506 * 113.61040 * 220.01400 * 15 14 12 18 18 C 1.34945 * 126.03736 * 12.21926 * 17 15 14 19 19 C 1.35312 * 107.74669 * 179.83744 * 18 17 15 20 20 C 1.39867 * 107.91944 * 0.42016 * 19 18 17 21 21 N 1.30835 * 108.20470 * 359.73793 * 20 19 18 22 22 C 1.53779 * 87.08341 * 334.56257 * 15 14 12 23 23 C 1.33390 * 114.91796 * 0.24797 * 6 5 4 24 24 S 1.75878 * 125.20476 * 244.96241 * 4 2 1 25 25 H 0.96698 * 114.00518 * 60.00203 * 1 2 3 26 26 H 1.09002 * 109.47152 * 240.00075 * 2 1 3 27 27 H 1.48494 * 109.99864 * 298.68099 * 3 2 1 28 28 H 1.48497 * 110.00071 * 60.00064 * 3 2 1 29 29 H 1.07999 * 122.53888 * 359.97438 * 5 4 2 30 30 H 0.97001 * 120.00224 * 245.00409 * 10 7 6 31 31 H 1.09007 * 109.47241 * 285.27714 * 11 10 7 32 32 H 1.08995 * 109.47308 * 45.27753 * 11 10 7 33 33 H 1.08996 * 113.60930 * 254.52922 * 14 12 11 34 34 H 1.08999 * 113.61517 * 25.43292 * 14 12 11 35 35 H 1.08003 * 126.12490 * 359.97438 * 18 17 15 36 36 H 1.08006 * 126.04290 * 180.15817 * 19 18 17 37 37 H 1.08005 * 125.90203 * 179.71946 * 20 19 18 38 38 H 1.08993 * 113.61571 * 270.88382 * 22 15 14 39 39 H 1.09000 * 113.61006 * 139.98250 * 22 15 14 40 40 H 1.08001 * 125.20245 * 179.75605 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7534 -2.0051 1.4974 6 6 2.3064 -2.4360 2.6910 7 16 2.1901 -4.1058 3.2412 8 8 1.0539 -4.6631 2.5950 9 8 2.3436 -4.0745 4.6536 10 7 3.5087 -4.9112 2.6454 11 6 4.8550 -4.5415 3.0893 12 6 5.8423 -5.6416 2.6944 13 1 5.4616 -6.6433 2.8934 14 6 6.4220 -5.4706 1.2803 15 6 7.7705 -5.9248 1.8634 16 1 7.9189 -7.0043 1.8344 17 7 8.9174 -5.1787 1.3397 18 6 8.8612 -4.0394 0.6188 19 6 10.1309 -3.6692 0.3327 20 6 10.9922 -4.6199 0.8900 21 7 10.2660 -5.5252 1.4939 22 6 7.2679 -5.4083 3.2218 23 6 2.9289 -1.4900 3.3959 24 16 2.8428 0.0407 2.5338 25 1 -0.3934 0.4416 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5878 2.4585 -1.2242 28 1 1.5614 2.4679 1.2085 29 1 1.2184 -2.6671 0.8326 30 1 3.3900 -5.6251 1.9995 31 1 5.1484 -3.6036 2.6175 32 1 4.8600 -4.4205 4.1725 33 1 6.0055 -6.1651 0.5508 34 1 6.4230 -4.4381 0.9307 35 1 7.9636 -3.5155 0.3249 36 1 10.4268 -2.7963 -0.2303 37 1 12.0706 -4.6088 0.8316 38 1 7.5001 -4.3589 3.4030 39 1 7.5343 -6.0526 4.0596 40 1 3.4136 -1.6413 4.3491 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567566_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:10 Heat of formation + Delta-G solvation = 43.331891 kcal Electronic energy + Delta-G solvation = -26697.309704 eV Core-core repulsion = 22735.550723 eV Total energy + Delta-G solvation = -3961.758980 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.20020 -39.98671 -39.40573 -38.39510 -37.69270 -37.02494 -35.88482 -32.42532 -31.98218 -30.90616 -28.17788 -27.19167 -26.78737 -24.85254 -24.37763 -22.08350 -21.65093 -21.20843 -20.33605 -19.96289 -19.01619 -18.73412 -18.58908 -18.13652 -17.77043 -17.11826 -16.70207 -16.24617 -15.85935 -15.71212 -15.44099 -15.40192 -14.94526 -14.54366 -14.32737 -14.28029 -14.14914 -13.94139 -13.79803 -13.65589 -13.33554 -13.30731 -13.22231 -13.19907 -12.88916 -12.78609 -12.68182 -12.45828 -12.11130 -11.70553 -11.66525 -11.50691 -11.39053 -10.66348 -10.48708 -10.30393 -10.18439 -9.80715 -9.44394 -5.11068 -0.77346 -0.47223 0.34475 0.60419 0.96416 1.02824 1.19097 1.50740 1.67648 1.84758 1.99327 2.07332 2.68695 3.18937 3.25140 3.36091 3.41091 3.64896 3.68028 3.75210 3.92763 3.95087 4.10132 4.17219 4.20691 4.36532 4.39553 4.49453 4.64047 4.67171 4.69173 4.77087 4.82258 4.88772 4.91695 4.95787 5.04166 5.06203 5.07054 5.20457 5.39121 5.80349 6.07768 6.24112 6.49998 6.83574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.046 4.046 3 Si 0.719 3.281 4 C -0.197 4.197 5 C -0.056 4.056 6 C -0.691 4.691 7 S 2.728 3.272 8 O -0.990 6.990 9 O -0.983 6.983 10 N -1.100 6.100 11 C 0.119 3.881 12 C -0.101 4.101 13 H 0.117 0.883 14 C -0.130 4.130 15 C 0.120 3.880 16 H 0.116 0.884 17 N -0.366 5.366 18 C 0.056 3.944 19 C -0.291 4.291 20 C 0.029 3.971 21 N -0.347 5.347 22 C -0.136 4.136 23 C -0.088 4.088 24 S 0.184 5.816 25 H 0.400 0.600 26 H 0.114 0.886 27 H -0.256 1.256 28 H -0.280 1.280 29 H 0.153 0.847 30 H 0.430 0.570 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.206 0.794 36 H 0.163 0.837 37 H 0.195 0.805 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 3.480 -4.637 6.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.157 4.157 3 Si 0.620 3.380 4 C -0.314 4.314 5 C -0.085 4.085 6 C -0.792 4.792 7 S 2.816 3.184 8 O -0.980 6.980 9 O -0.972 6.972 10 N -0.864 5.864 11 C -0.006 4.006 12 C -0.121 4.121 13 H 0.135 0.865 14 C -0.169 4.169 15 C 0.019 3.981 16 H 0.134 0.866 17 N -0.148 5.148 18 C -0.090 4.090 19 C -0.320 4.320 20 C -0.156 4.156 21 N -0.169 5.169 22 C -0.176 4.176 23 C -0.227 4.227 24 S 0.448 5.552 25 H 0.251 0.749 26 H 0.131 0.869 27 H -0.180 1.180 28 H -0.206 1.206 29 H 0.170 0.830 30 H 0.268 0.732 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.223 0.777 36 H 0.181 0.819 37 H 0.211 0.789 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.470 4.135 -2.455 5.930 hybrid contribution -1.353 -0.557 -1.747 2.279 sum 2.117 3.578 -4.202 5.911 Atomic orbital electron populations 1.86576 1.18154 1.80600 1.51406 1.24298 0.84147 1.10809 0.96428 0.94618 0.90427 0.73145 0.79773 1.24058 1.08369 0.97302 1.01670 1.19663 0.97986 0.95666 0.95203 1.29825 1.16520 1.25677 1.07142 1.00728 0.72174 0.72731 0.72784 1.93565 1.49566 1.77705 1.77137 1.93572 1.86380 1.87095 1.30198 1.55173 1.19814 1.50030 1.61383 1.21548 0.79629 0.98473 1.00997 1.22489 0.93086 1.00682 0.95876 0.86521 1.23606 0.91090 1.04508 0.97648 1.23156 0.81434 0.97097 0.96452 0.86640 1.48975 1.04736 1.19699 1.41390 1.23038 1.01002 0.89319 0.95664 1.21880 0.92036 1.05461 1.12665 1.24328 1.01449 0.93025 0.96778 1.77315 0.88297 1.25406 1.25895 1.23468 0.94574 1.03074 0.96455 1.26253 0.98136 0.95519 1.02757 1.84371 1.49316 1.10231 1.11310 0.74894 0.86852 1.17995 1.20614 0.82976 0.73192 0.89084 0.89649 0.88467 0.87060 0.77721 0.81925 0.78853 0.88737 0.90138 0.77593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.39 12.86 -148.98 -1.92 -2.31 16 2 C -0.05 0.14 2.95 71.24 0.21 0.35 16 3 Si 0.72 -3.02 30.98 68.60 2.13 -0.89 16 4 C -0.20 0.04 5.73 24.59 0.14 0.18 16 5 C -0.06 -0.06 9.59 21.22 0.20 0.14 16 6 C -0.69 0.29 5.86 21.22 0.12 0.42 16 7 S 2.73 2.81 5.80 -56.49 -0.33 2.49 16 8 O -0.99 -8.50 17.63 -128.00 -2.26 -10.76 16 9 O -0.98 -6.54 17.12 -128.00 -2.19 -8.73 16 10 N -1.10 8.13 6.00 -187.48 -1.12 7.01 16 11 C 0.12 -1.21 6.05 86.38 0.52 -0.69 16 12 C -0.10 1.11 3.78 -10.26 -0.04 1.07 16 13 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 14 C -0.13 1.47 6.98 31.12 0.22 1.69 16 15 C 0.12 -0.59 5.04 45.51 0.23 -0.36 16 16 H 0.12 -0.44 8.14 -2.39 -0.02 -0.46 16 17 N -0.37 -0.36 3.81 -324.99 -1.24 -1.59 16 18 C 0.06 -0.15 10.69 83.54 0.89 0.74 16 19 C -0.29 0.04 10.80 21.99 0.24 0.27 16 20 C 0.03 0.11 12.02 85.24 1.02 1.13 16 21 N -0.35 -2.61 12.58 -57.02 -0.72 -3.33 16 22 C -0.14 1.00 7.44 31.12 0.23 1.23 16 23 C -0.09 0.28 10.70 66.72 0.71 1.00 16 24 S 0.18 -0.54 20.60 -56.49 -1.16 -1.70 16 25 H 0.40 -3.14 8.74 -74.06 -0.65 -3.78 16 26 H 0.11 -0.93 7.96 -2.39 -0.02 -0.95 16 27 H -0.26 0.31 7.11 99.48 0.71 1.02 16 28 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 29 H 0.15 0.16 7.97 -2.91 -0.02 0.14 16 30 H 0.43 -4.61 8.65 -96.74 -0.84 -5.44 16 31 H 0.09 -1.28 7.84 -2.38 -0.02 -1.30 16 32 H 0.09 -0.77 7.76 -2.39 -0.02 -0.79 16 33 H 0.10 -1.21 8.14 -2.39 -0.02 -1.23 16 34 H 0.11 -1.55 6.07 -2.39 -0.01 -1.57 16 35 H 0.21 -2.25 6.68 -2.91 -0.02 -2.27 16 36 H 0.16 -0.71 8.06 -2.91 -0.02 -0.73 16 37 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 38 H 0.09 -0.68 8.10 -2.39 -0.02 -0.70 16 39 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.21 -1.67 8.00 -2.91 -0.02 -1.69 16 Total: 0.00 -30.25 365.68 -4.45 -34.70 By element: Atomic # 1 Polarization: -21.71 SS G_CDS: -0.35 Total: -22.06 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.71 Total: 7.18 kcal Atomic # 7 Polarization: 5.17 SS G_CDS: -3.08 Total: 2.09 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -6.36 Total: -21.80 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.13 Total: -0.89 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.49 Total: 0.78 kcal Total: -30.25 -4.45 -34.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.028 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds