Wall clock time and date at job start Mon Mar 8 2021 10:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33391 * 125.20005 * 2 1 4 4 C 1.50705 * 122.54314 * 0.05916 * 3 2 1 5 5 O 1.42903 * 109.46550 * 67.24438 * 4 3 2 6 6 Si 1.86298 * 109.47033 * 307.24551 * 4 3 2 7 7 C 1.38425 * 114.92105 * 180.02562 * 3 2 1 8 8 S 1.76196 * 122.54312 * 179.97438 * 7 3 2 9 9 O 1.42103 * 106.39934 * 31.36296 * 8 7 3 10 10 O 1.42102 * 106.40307 * 164.28334 * 8 7 3 11 11 N 1.65595 * 107.21800 * 277.82403 * 8 7 3 12 12 C 1.46498 * 120.00207 * 65.00185 * 11 8 7 13 13 C 1.52999 * 109.47230 * 165.00163 * 12 11 8 14 14 H 1.08995 * 112.85201 * 45.32791 * 13 12 11 15 15 C 1.53783 * 113.61357 * 176.52703 * 13 12 11 16 16 C 1.53778 * 87.08027 * 139.97781 * 15 13 12 17 17 H 1.08998 * 113.61529 * 89.20268 * 16 15 13 18 18 N 1.46502 * 113.61723 * 220.01750 * 16 15 13 19 19 C 1.34949 * 126.03673 * 84.71464 * 18 16 15 20 20 C 1.35323 * 107.74579 * 179.84381 * 19 18 16 21 21 C 1.39864 * 107.91845 * 0.42371 * 20 19 18 22 22 N 1.30840 * 108.20381 * 359.73823 * 21 20 19 23 23 C 1.53787 * 113.61380 * 274.13218 * 13 12 11 24 24 C 1.33398 * 114.91936 * 0.24746 * 7 3 2 25 25 C 1.50699 * 125.20459 * 179.75445 * 24 7 3 26 26 S 1.75881 * 109.59159 * 359.63581 * 24 7 3 27 27 H 1.09002 * 109.47537 * 93.95122 * 1 2 3 28 28 H 1.08999 * 109.47302 * 213.95622 * 1 2 3 29 29 H 1.09007 * 109.47195 * 333.95644 * 1 2 3 30 30 H 1.08999 * 109.46854 * 187.23967 * 4 3 2 31 31 H 0.96693 * 114.00124 * 65.14205 * 5 4 3 32 32 H 1.48499 * 109.99790 * 307.47182 * 6 4 3 33 33 H 1.48491 * 110.00261 * 68.79072 * 6 4 3 34 34 H 0.97009 * 120.00045 * 244.99915 * 11 8 7 35 35 H 1.09008 * 109.46989 * 284.99612 * 12 11 8 36 36 H 1.08990 * 109.47455 * 44.99497 * 12 11 8 37 37 H 1.08996 * 113.61484 * 254.52821 * 15 13 12 38 38 H 1.08998 * 113.61557 * 25.43200 * 15 13 12 39 39 H 1.08005 * 126.12543 * 359.97438 * 19 18 16 40 40 H 1.08000 * 126.03891 * 180.15951 * 20 19 18 41 41 H 1.07997 * 125.89594 * 179.71978 * 21 20 19 42 42 H 1.09001 * 113.60940 * 334.56985 * 23 13 12 43 43 H 1.08996 * 113.61231 * 105.47035 * 23 13 12 44 44 H 1.08995 * 109.46771 * 84.18012 * 25 24 7 45 45 H 1.09001 * 109.47038 * 204.18452 * 25 24 7 46 46 H 1.09006 * 109.46856 * 324.18374 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4848 0.0013 5 8 1.0434 2.7274 1.2445 6 14 0.4849 2.6577 -1.3958 7 6 3.6379 0.8430 -0.0006 8 16 4.8356 2.1353 -0.0013 9 8 4.2548 3.2209 0.7082 10 8 6.0710 1.5378 0.3675 11 7 5.0101 2.6409 -1.5685 12 6 3.8879 3.2780 -2.2620 13 6 4.3982 3.9752 -3.5247 14 1 5.0879 3.3576 -4.0999 15 6 3.2820 4.6064 -4.3736 16 6 4.2342 5.7922 -4.6018 17 1 4.8789 5.6732 -5.4726 18 7 3.5677 7.0963 -4.5615 19 6 3.3004 7.8173 -3.4526 20 6 2.6824 8.9570 -3.8407 21 6 2.5595 8.9270 -5.2336 22 7 3.0898 7.8121 -5.6668 23 6 4.9115 5.4032 -3.2752 24 6 3.9751 -0.4477 -0.0062 25 6 5.3861 -0.9770 -0.0133 26 16 2.5210 -1.4371 -0.0008 27 1 -0.3634 -0.0708 -1.0252 28 1 -0.3634 -0.8524 0.5740 29 1 -0.3634 0.9234 0.4512 30 1 2.5109 3.2072 -0.1284 31 1 1.6340 2.7317 2.0101 32 1 1.1121 2.2336 -2.6733 33 1 -0.7196 1.8331 -1.1231 34 1 5.8555 2.5153 -2.0274 35 1 3.1535 2.5207 -2.5368 36 1 3.4237 4.0123 -1.6039 37 1 3.0550 4.0477 -5.2815 38 1 2.3915 4.8655 -3.8010 39 1 3.5390 7.5362 -2.4374 40 1 2.3404 9.7478 -3.1894 41 1 2.1051 9.6919 -5.8457 42 1 4.4672 5.8804 -2.4017 43 1 5.9980 5.4867 -3.2977 44 1 5.7666 -1.0105 1.0075 45 1 5.3954 -1.9809 -0.4378 46 1 6.0167 -0.3223 -0.6149 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567566_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:15 Heat of formation + Delta-G solvation = 50.768511 kcal Electronic energy + Delta-G solvation = -32457.535835 eV Core-core repulsion = 28185.024092 eV Total energy + Delta-G solvation = -4272.511742 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.101 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.24613 -40.44004 -40.16334 -38.61631 -37.05003 -37.00357 -36.19956 -34.40751 -32.48893 -31.01403 -30.88688 -28.57359 -28.00754 -27.09273 -26.07701 -24.56930 -23.31905 -22.24535 -21.72725 -20.93191 -20.40673 -19.94935 -19.20599 -18.62277 -18.41526 -18.17953 -17.44961 -17.11560 -16.94596 -16.34452 -15.97484 -15.60633 -15.50647 -15.45269 -15.32795 -15.24067 -14.86906 -14.56140 -14.51753 -14.34767 -14.00531 -13.95671 -13.76222 -13.57901 -13.50154 -13.46472 -13.38700 -13.24939 -13.10212 -12.88334 -12.78332 -12.66590 -12.43023 -12.07836 -11.85488 -11.76032 -11.66969 -11.46013 -11.33299 -10.92993 -10.73377 -10.25999 -10.11662 -9.64855 -9.43617 -4.95979 -0.88671 -0.53371 0.26648 0.59378 0.75753 1.02807 1.24805 1.51837 1.57916 1.86299 1.88122 2.04246 2.52352 2.97202 3.02803 3.15379 3.32357 3.35282 3.41102 3.61362 3.73105 3.78200 3.88106 3.91507 3.93941 4.04536 4.07140 4.14385 4.15094 4.32650 4.34970 4.39267 4.39538 4.41849 4.46316 4.51980 4.56362 4.65116 4.70235 4.80409 4.80690 4.89815 4.92149 4.95711 5.06934 5.11520 5.20094 5.66144 5.82130 6.14924 6.56739 6.87467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.170 4.170 3 C -0.079 4.079 4 C -0.086 4.086 5 O -0.527 6.527 6 Si 0.713 3.287 7 C -0.689 4.689 8 S 2.706 3.294 9 O -0.946 6.946 10 O -0.950 6.950 11 N -1.114 6.114 12 C 0.116 3.884 13 C -0.113 4.113 14 H 0.110 0.890 15 C -0.141 4.141 16 C 0.138 3.862 17 H 0.124 0.876 18 N -0.364 5.364 19 C 0.052 3.948 20 C -0.272 4.272 21 C 0.044 3.956 22 N -0.298 5.298 23 C -0.142 4.142 24 C -0.048 4.048 25 C -0.112 4.112 26 S 0.159 5.841 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.372 0.628 32 H -0.243 1.243 33 H -0.229 1.229 34 H 0.422 0.578 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.182 0.818 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -1.232 -1.598 2.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.288 4.288 3 C -0.089 4.089 4 C -0.197 4.197 5 O -0.333 6.333 6 Si 0.610 3.390 7 C -0.788 4.788 8 S 2.794 3.206 9 O -0.936 6.936 10 O -0.940 6.940 11 N -0.875 5.875 12 C -0.010 4.010 13 C -0.133 4.133 14 H 0.128 0.872 15 C -0.181 4.181 16 C 0.036 3.964 17 H 0.141 0.859 18 N -0.146 5.146 19 C -0.093 4.093 20 C -0.302 4.302 21 C -0.142 4.142 22 N -0.119 5.119 23 C -0.181 4.181 24 C -0.169 4.169 25 C -0.170 4.170 26 S 0.425 5.575 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.220 0.780 32 H -0.168 1.168 33 H -0.152 1.152 34 H 0.258 0.742 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.190 0.810 40 H 0.166 0.834 41 H 0.199 0.801 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.693 -3.704 -2.811 4.702 hybrid contribution 1.115 0.343 1.237 1.701 sum 0.422 -3.361 -1.574 3.735 Atomic orbital electron populations 1.20834 0.87091 1.04973 1.02970 1.24480 1.00426 0.95078 1.08769 1.18634 0.90165 0.97214 1.02894 1.25632 1.06138 0.91253 0.96688 1.86630 1.37325 1.93962 1.15346 0.94215 0.80105 0.90874 0.73849 1.29542 1.11835 1.13483 1.23911 1.01613 0.73083 0.73452 0.72501 1.93558 1.78615 1.51527 1.69902 1.93614 1.41574 1.77907 1.80872 1.55507 1.22072 1.75549 1.34338 1.21626 0.88123 0.97172 0.94091 1.22566 0.99138 0.95584 0.96005 0.87164 1.23535 0.97759 0.95707 1.01062 1.22856 0.94791 0.78253 1.00489 0.85868 1.48698 1.45407 1.16329 1.04144 1.22513 1.00224 0.93219 0.93383 1.21566 1.11982 1.01074 0.95565 1.23941 0.99242 0.95924 0.95051 1.77384 1.17988 1.06983 1.09529 1.23629 1.02270 0.95334 0.96826 1.24638 1.00804 0.95002 0.96457 1.20948 0.88057 1.02313 1.05690 1.84458 0.95238 1.08586 1.69213 0.90499 0.90424 0.88174 0.88851 0.77991 1.16806 1.15224 0.74248 0.90993 0.89427 0.89457 0.88424 0.80975 0.83415 0.80062 0.88154 0.89237 0.88074 0.90086 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.06 8.08 36.01 0.29 0.23 16 2 C -0.17 -0.26 6.10 -36.00 -0.22 -0.48 16 3 C -0.08 -0.13 4.54 -106.24 -0.48 -0.61 16 4 C -0.09 -0.08 1.94 36.01 0.07 -0.01 16 5 O -0.53 -0.78 11.72 -35.23 -0.41 -1.20 16 6 Si 0.71 -0.41 28.10 -169.99 -4.78 -5.18 16 7 C -0.69 -0.84 5.85 -41.20 -0.24 -1.08 16 8 S 2.71 1.89 5.36 -107.50 -0.58 1.31 16 9 O -0.95 -2.48 14.62 -57.17 -0.84 -3.32 16 10 O -0.95 -2.40 14.76 -57.17 -0.84 -3.24 16 11 N -1.11 2.86 6.00 -10.62 -0.06 2.79 16 12 C 0.12 -0.34 4.46 -4.04 -0.02 -0.36 16 13 C -0.11 0.47 3.78 -89.80 -0.34 0.13 16 14 H 0.11 -0.61 8.14 -51.93 -0.42 -1.03 16 15 C -0.14 0.43 7.44 -25.92 -0.19 0.23 16 16 C 0.14 -0.26 5.04 -67.03 -0.34 -0.60 16 17 H 0.12 -0.27 8.14 -51.93 -0.42 -0.69 16 18 N -0.36 -0.34 3.81 -53.98 -0.21 -0.54 16 19 C 0.05 -0.01 10.69 -17.22 -0.18 -0.19 16 20 C -0.27 -0.17 10.80 -40.01 -0.43 -0.60 16 21 C 0.04 0.08 12.03 -17.37 -0.21 -0.13 16 22 N -0.30 -1.01 12.58 30.62 0.39 -0.63 16 23 C -0.14 0.54 7.00 -25.83 -0.18 0.36 16 24 C -0.05 -0.04 6.50 -36.00 -0.23 -0.27 16 25 C -0.11 0.09 8.90 36.01 0.32 0.41 16 26 S 0.16 0.08 23.31 -107.50 -2.51 -2.42 16 27 H 0.08 0.01 7.02 -51.93 -0.36 -0.36 16 28 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 29 H 0.10 0.12 5.14 -51.93 -0.27 -0.15 16 30 H 0.09 0.02 2.66 -51.93 -0.14 -0.12 16 31 H 0.37 -0.01 9.11 45.56 0.42 0.41 16 32 H -0.24 0.08 6.33 56.52 0.36 0.44 16 33 H -0.23 -0.16 4.96 56.52 0.28 0.12 16 34 H 0.42 -2.00 8.65 -34.47 -0.30 -2.30 16 35 H 0.07 -0.20 5.99 -51.92 -0.31 -0.51 16 36 H 0.09 -0.28 6.00 -51.93 -0.31 -0.60 16 37 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 38 H 0.10 -0.28 8.10 -51.93 -0.42 -0.70 16 39 H 0.17 -0.53 6.69 -52.48 -0.35 -0.89 16 40 H 0.15 -0.18 8.06 -52.49 -0.42 -0.60 16 41 H 0.18 -0.17 8.06 -52.49 -0.42 -0.59 16 42 H 0.10 -0.41 6.10 -51.93 -0.32 -0.72 16 43 H 0.09 -0.39 8.14 -51.93 -0.42 -0.82 16 44 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 45 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 46 H 0.10 -0.12 6.36 -51.93 -0.33 -0.45 16 LS Contribution 379.65 15.07 5.72 5.72 Total: 0.00 -9.12 379.65 -12.37 -21.49 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: -5.86 Total: -11.82 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.39 Total: -2.96 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: 0.12 Total: 1.62 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -2.09 Total: -7.75 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: -4.78 Total: -5.18 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -3.08 Total: -1.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -9.12 -12.37 -21.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.259 kcal (2) G-P(sol) polarization free energy of solvation -9.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds