Wall clock time and date at job start Mon Mar 8 2021 10:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33391 * 125.20005 * 2 1 4 4 C 1.50705 * 122.54314 * 0.05916 * 3 2 1 5 5 O 1.42903 * 109.46550 * 67.24438 * 4 3 2 6 6 Si 1.86298 * 109.47033 * 307.24551 * 4 3 2 7 7 C 1.38425 * 114.92105 * 180.02562 * 3 2 1 8 8 S 1.76196 * 122.54312 * 179.97438 * 7 3 2 9 9 O 1.42103 * 106.39934 * 31.36296 * 8 7 3 10 10 O 1.42102 * 106.40307 * 164.28334 * 8 7 3 11 11 N 1.65595 * 107.21800 * 277.82403 * 8 7 3 12 12 C 1.46498 * 120.00207 * 65.00185 * 11 8 7 13 13 C 1.52999 * 109.47230 * 165.00163 * 12 11 8 14 14 H 1.08995 * 112.85201 * 45.32791 * 13 12 11 15 15 C 1.53783 * 113.61357 * 176.52703 * 13 12 11 16 16 C 1.53778 * 87.08027 * 139.97781 * 15 13 12 17 17 H 1.08998 * 113.61529 * 89.20268 * 16 15 13 18 18 N 1.46502 * 113.61723 * 220.01750 * 16 15 13 19 19 C 1.34949 * 126.03673 * 84.71464 * 18 16 15 20 20 C 1.35323 * 107.74579 * 179.84381 * 19 18 16 21 21 C 1.39864 * 107.91845 * 0.42371 * 20 19 18 22 22 N 1.30840 * 108.20381 * 359.73823 * 21 20 19 23 23 C 1.53787 * 113.61380 * 274.13218 * 13 12 11 24 24 C 1.33398 * 114.91936 * 0.24746 * 7 3 2 25 25 C 1.50699 * 125.20459 * 179.75445 * 24 7 3 26 26 S 1.75881 * 109.59159 * 359.63581 * 24 7 3 27 27 H 1.09002 * 109.47537 * 93.95122 * 1 2 3 28 28 H 1.08999 * 109.47302 * 213.95622 * 1 2 3 29 29 H 1.09007 * 109.47195 * 333.95644 * 1 2 3 30 30 H 1.08999 * 109.46854 * 187.23967 * 4 3 2 31 31 H 0.96693 * 114.00124 * 65.14205 * 5 4 3 32 32 H 1.48499 * 109.99790 * 307.47182 * 6 4 3 33 33 H 1.48491 * 110.00261 * 68.79072 * 6 4 3 34 34 H 0.97009 * 120.00045 * 244.99915 * 11 8 7 35 35 H 1.09008 * 109.46989 * 284.99612 * 12 11 8 36 36 H 1.08990 * 109.47455 * 44.99497 * 12 11 8 37 37 H 1.08996 * 113.61484 * 254.52821 * 15 13 12 38 38 H 1.08998 * 113.61557 * 25.43200 * 15 13 12 39 39 H 1.08005 * 126.12543 * 359.97438 * 19 18 16 40 40 H 1.08000 * 126.03891 * 180.15951 * 20 19 18 41 41 H 1.07997 * 125.89594 * 179.71978 * 21 20 19 42 42 H 1.09001 * 113.60940 * 334.56985 * 23 13 12 43 43 H 1.08996 * 113.61231 * 105.47035 * 23 13 12 44 44 H 1.08995 * 109.46771 * 84.18012 * 25 24 7 45 45 H 1.09001 * 109.47038 * 204.18452 * 25 24 7 46 46 H 1.09006 * 109.46856 * 324.18374 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4848 0.0013 5 8 1.0434 2.7274 1.2445 6 14 0.4849 2.6577 -1.3958 7 6 3.6379 0.8430 -0.0006 8 16 4.8356 2.1353 -0.0013 9 8 4.2548 3.2209 0.7082 10 8 6.0710 1.5378 0.3675 11 7 5.0101 2.6409 -1.5685 12 6 3.8879 3.2780 -2.2620 13 6 4.3982 3.9752 -3.5247 14 1 5.0879 3.3576 -4.0999 15 6 3.2820 4.6064 -4.3736 16 6 4.2342 5.7922 -4.6018 17 1 4.8789 5.6732 -5.4726 18 7 3.5677 7.0963 -4.5615 19 6 3.3004 7.8173 -3.4526 20 6 2.6824 8.9570 -3.8407 21 6 2.5595 8.9270 -5.2336 22 7 3.0898 7.8121 -5.6668 23 6 4.9115 5.4032 -3.2752 24 6 3.9751 -0.4477 -0.0062 25 6 5.3861 -0.9770 -0.0133 26 16 2.5210 -1.4371 -0.0008 27 1 -0.3634 -0.0708 -1.0252 28 1 -0.3634 -0.8524 0.5740 29 1 -0.3634 0.9234 0.4512 30 1 2.5109 3.2072 -0.1284 31 1 1.6340 2.7317 2.0101 32 1 1.1121 2.2336 -2.6733 33 1 -0.7196 1.8331 -1.1231 34 1 5.8555 2.5153 -2.0274 35 1 3.1535 2.5207 -2.5368 36 1 3.4237 4.0123 -1.6039 37 1 3.0550 4.0477 -5.2815 38 1 2.3915 4.8655 -3.8010 39 1 3.5390 7.5362 -2.4374 40 1 2.3404 9.7478 -3.1894 41 1 2.1051 9.6919 -5.8457 42 1 4.4672 5.8804 -2.4017 43 1 5.9980 5.4867 -3.2977 44 1 5.7666 -1.0105 1.0075 45 1 5.3954 -1.9809 -0.4378 46 1 6.0167 -0.3223 -0.6149 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567566_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:14 Heat of formation + Delta-G solvation = 49.733654 kcal Electronic energy + Delta-G solvation = -32457.580710 eV Core-core repulsion = 28185.024092 eV Total energy + Delta-G solvation = -4272.556617 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.101 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.18721 -40.44220 -39.99937 -38.70415 -37.15053 -37.06913 -36.04517 -34.42110 -32.43279 -31.01041 -30.88478 -28.44559 -27.97131 -26.81405 -26.10202 -24.43922 -23.32751 -22.12222 -21.68977 -20.92776 -20.32683 -19.90946 -19.18768 -18.59442 -18.35584 -18.22031 -17.39453 -17.02411 -16.80035 -16.35964 -15.96090 -15.49984 -15.46372 -15.42658 -15.29712 -15.21136 -14.88276 -14.55549 -14.42239 -14.32801 -13.98742 -13.80225 -13.74048 -13.56245 -13.52131 -13.36615 -13.35309 -13.22459 -13.07429 -12.84299 -12.72668 -12.68137 -12.20044 -11.89890 -11.83794 -11.64016 -11.60346 -11.39544 -11.36331 -10.94885 -10.57910 -10.28005 -10.14430 -9.68454 -9.42604 -4.91290 -0.89755 -0.57457 0.24387 0.55538 0.70994 1.03893 1.26099 1.55344 1.68095 1.90571 1.91769 2.01731 2.51042 3.05738 3.21277 3.36094 3.37746 3.57439 3.57593 3.68644 3.74971 3.89160 3.94414 4.03935 4.08886 4.13649 4.16927 4.22736 4.33853 4.34839 4.45598 4.48777 4.53643 4.59650 4.66404 4.68188 4.80040 4.80763 4.81116 4.87298 4.94651 4.99341 5.01781 5.03310 5.08994 5.23183 5.34012 5.82863 5.96147 6.24479 6.55287 6.85315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.187 4.187 3 C -0.086 4.086 4 C -0.099 4.099 5 O -0.537 6.537 6 Si 0.753 3.247 7 C -0.699 4.699 8 S 2.718 3.282 9 O -0.968 6.968 10 O -0.970 6.970 11 N -1.100 6.100 12 C 0.107 3.893 13 C -0.099 4.099 14 H 0.128 0.872 15 C -0.142 4.142 16 C 0.125 3.875 17 H 0.122 0.878 18 N -0.366 5.366 19 C 0.053 3.947 20 C -0.289 4.289 21 C 0.031 3.969 22 N -0.343 5.343 23 C -0.137 4.137 24 C -0.052 4.052 25 C -0.117 4.117 26 S 0.169 5.831 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.376 0.624 32 H -0.244 1.244 33 H -0.248 1.248 34 H 0.433 0.567 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.201 0.799 40 H 0.162 0.838 41 H 0.196 0.804 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 -1.610 -1.629 2.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.305 4.305 3 C -0.097 4.097 4 C -0.209 4.209 5 O -0.343 6.343 6 Si 0.650 3.350 7 C -0.798 4.798 8 S 2.805 3.195 9 O -0.958 6.958 10 O -0.960 6.960 11 N -0.864 5.864 12 C -0.019 4.019 13 C -0.120 4.120 14 H 0.146 0.854 15 C -0.181 4.181 16 C 0.024 3.976 17 H 0.140 0.860 18 N -0.148 5.148 19 C -0.093 4.093 20 C -0.318 4.318 21 C -0.154 4.154 22 N -0.164 5.164 23 C -0.175 4.175 24 C -0.173 4.173 25 C -0.176 4.176 26 S 0.436 5.564 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.225 0.775 32 H -0.169 1.169 33 H -0.173 1.173 34 H 0.272 0.728 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.218 0.782 40 H 0.180 0.820 41 H 0.213 0.787 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.124 -4.086 -2.839 4.977 hybrid contribution 0.940 0.432 1.258 1.628 sum 0.815 -3.654 -1.581 4.064 Atomic orbital electron populations 1.20849 0.86800 1.04991 1.03290 1.24675 1.00936 0.95627 1.09295 1.18778 0.90420 0.97568 1.02911 1.25903 1.06940 0.91160 0.96899 1.86602 1.37880 1.93990 1.15838 0.93798 0.78313 0.90088 0.72825 1.29615 1.11813 1.13866 1.24479 1.01092 0.72369 0.72952 0.73039 1.93529 1.78899 1.52245 1.71092 1.93584 1.42437 1.78230 1.81755 1.55215 1.22832 1.75068 1.33311 1.21788 0.88037 0.97407 0.94664 1.22514 0.98777 0.95449 0.95223 0.85431 1.23542 0.97936 0.95306 1.01299 1.23132 0.95351 0.77549 1.01606 0.86034 1.48939 1.45146 1.16915 1.03844 1.23019 0.99190 0.92773 0.94318 1.21866 1.12576 1.02004 0.95381 1.24323 0.99075 0.95958 0.96019 1.77302 1.19654 1.08139 1.11344 1.23662 1.02800 0.95226 0.95822 1.24895 1.01514 0.95004 0.95863 1.21074 0.87183 1.03440 1.05863 1.84356 0.94946 1.08085 1.69024 0.90148 0.89571 0.88920 0.88322 0.77544 1.16914 1.17317 0.72829 0.91006 0.89057 0.89474 0.88546 0.78189 0.82022 0.78690 0.87673 0.88236 0.88194 0.88268 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.17 8.08 71.24 0.58 0.40 16 2 C -0.19 -0.62 6.10 24.59 0.15 -0.47 16 3 C -0.09 -0.29 4.54 -20.92 -0.09 -0.39 16 4 C -0.10 -0.19 1.94 71.24 0.14 -0.06 16 5 O -0.54 -1.92 11.72 -148.98 -1.75 -3.67 16 6 Si 0.75 -0.84 28.10 68.60 1.93 1.09 16 7 C -0.70 -1.73 5.85 21.22 0.12 -1.60 16 8 S 2.72 3.38 5.36 -56.49 -0.30 3.08 16 9 O -0.97 -5.15 14.62 -128.00 -1.87 -7.02 16 10 O -0.97 -4.81 14.76 -128.00 -1.89 -6.70 16 11 N -1.10 6.66 6.00 -187.50 -1.12 5.53 16 12 C 0.11 -0.73 4.46 86.38 0.39 -0.35 16 13 C -0.10 0.97 3.78 -10.26 -0.04 0.93 16 14 H 0.13 -1.66 8.14 -2.39 -0.02 -1.68 16 15 C -0.14 0.93 7.44 31.12 0.23 1.16 16 16 C 0.13 -0.52 5.04 45.57 0.23 -0.29 16 17 H 0.12 -0.51 8.14 -2.39 -0.02 -0.53 16 18 N -0.37 -0.73 3.81 -324.71 -1.24 -1.96 16 19 C 0.05 -0.03 10.69 83.54 0.89 0.86 16 20 C -0.29 -0.38 10.80 21.99 0.24 -0.14 16 21 C 0.03 0.13 12.03 85.23 1.02 1.16 16 22 N -0.34 -2.65 12.58 -57.03 -0.72 -3.37 16 23 C -0.14 1.21 7.00 31.18 0.22 1.43 16 24 C -0.05 -0.07 6.50 24.59 0.16 0.09 16 25 C -0.12 0.24 8.90 71.24 0.63 0.87 16 26 S 0.17 0.17 23.31 -56.49 -1.32 -1.15 16 27 H 0.08 0.05 7.02 -2.39 -0.02 0.03 16 28 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.09 0.29 5.14 -2.38 -0.01 0.28 16 30 H 0.10 0.04 2.66 -2.39 -0.01 0.04 16 31 H 0.38 0.34 9.11 -74.06 -0.67 -0.34 16 32 H -0.24 0.29 6.33 99.48 0.63 0.92 16 33 H -0.25 -0.48 4.96 99.48 0.49 0.01 16 34 H 0.43 -4.68 8.65 -96.74 -0.84 -5.52 16 35 H 0.07 -0.46 5.99 -2.38 -0.01 -0.47 16 36 H 0.09 -0.68 6.00 -2.39 -0.01 -0.69 16 37 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.10 -0.60 8.10 -2.39 -0.02 -0.62 16 39 H 0.20 -1.52 6.69 -2.91 -0.02 -1.54 16 40 H 0.16 -0.43 8.06 -2.91 -0.02 -0.45 16 41 H 0.20 -0.17 8.06 -2.91 -0.02 -0.19 16 42 H 0.10 -1.02 6.10 -2.39 -0.01 -1.03 16 43 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.10 -0.29 6.36 -2.38 -0.02 -0.31 16 Total: 0.00 -21.06 379.65 -4.11 -25.17 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: -0.70 Total: -14.60 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.87 Total: 3.61 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -3.08 Total: 0.20 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -5.51 Total: -17.39 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: 1.93 Total: 1.09 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.62 Total: 1.92 kcal Total: -21.06 -4.11 -25.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567566_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.905 kcal (2) G-P(sol) polarization free energy of solvation -21.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds