Wall clock time and date at job start Mon Mar 8 2021 10:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47190 * 2 1 4 4 C 1.50699 * 109.47044 * 119.99776 * 2 1 3 5 5 C 1.33389 * 122.54185 * 75.00519 * 4 2 1 6 6 S 1.76206 * 125.19843 * 0.02562 * 5 4 2 7 7 O 1.42095 * 106.40243 * 263.54421 * 6 5 4 8 8 O 1.42092 * 106.40188 * 36.46534 * 6 5 4 9 9 N 1.65602 * 107.21553 * 150.00639 * 6 5 4 10 10 C 1.46497 * 120.00311 * 64.99690 * 9 6 5 11 11 C 1.53003 * 109.47086 * 165.00339 * 10 9 6 12 12 H 1.09000 * 112.85101 * 43.80273 * 11 10 9 13 13 C 1.53774 * 113.61438 * 175.00460 * 11 10 9 14 14 C 1.53773 * 87.08438 * 139.97644 * 13 11 10 15 15 H 1.09007 * 113.61620 * 89.11657 * 14 13 11 16 16 N 1.46503 * 113.61807 * 219.93306 * 14 13 11 17 17 C 1.36879 * 126.39617 * 239.71458 * 16 14 13 18 18 C 1.34675 * 106.81348 * 179.84180 * 17 16 14 19 19 N 1.34123 * 108.02081 * 0.41846 * 18 17 16 20 20 C 1.30491 * 109.25825 * 359.73706 * 19 18 17 21 21 C 1.53781 * 87.08409 * 334.56636 * 14 13 11 22 22 S 1.75882 * 109.59634 * 180.02562 * 5 4 2 23 23 C 1.75887 * 90.96996 * 359.97438 * 22 5 4 24 24 C 1.33386 * 109.59271 * 359.72724 * 23 22 5 25 25 H 0.96695 * 114.00385 * 300.00492 * 1 2 3 26 26 H 1.09001 * 109.47626 * 240.00326 * 2 1 3 27 27 H 1.48506 * 110.00048 * 300.00131 * 3 2 1 28 28 H 1.48502 * 109.99996 * 61.31456 * 3 2 1 29 29 H 0.96998 * 119.99899 * 245.00126 * 9 6 5 30 30 H 1.08998 * 109.47397 * 284.99941 * 10 9 6 31 31 H 1.08998 * 109.46962 * 44.99923 * 10 9 6 32 32 H 1.09005 * 113.61405 * 254.52870 * 13 11 10 33 33 H 1.09004 * 113.61598 * 25.34121 * 13 11 10 34 34 H 1.07999 * 126.59583 * 359.97438 * 17 16 14 35 35 H 1.08002 * 125.98481 * 180.19050 * 18 17 16 36 36 H 1.08000 * 125.65583 * 180.02562 * 20 19 18 37 37 H 1.09001 * 113.61549 * 270.88667 * 21 14 13 38 38 H 1.09000 * 113.61933 * 139.97641 * 21 14 13 39 39 H 1.08001 * 125.19836 * 180.02562 * 23 22 5 40 40 H 1.08000 * 122.53764 * 180.23690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8961 -2.0377 1.3573 6 16 1.2764 -3.1577 0.1463 7 8 -0.0654 -3.4452 0.5150 8 8 1.6367 -2.6203 -1.1188 9 7 2.1201 -4.5732 0.3105 10 6 1.9923 -5.3641 1.5370 11 6 2.5523 -6.7679 1.2993 12 1 3.4964 -6.7604 0.7546 13 6 2.5772 -7.6434 2.5632 14 6 2.1290 -8.8108 1.6683 15 1 2.9571 -9.3631 1.2237 16 7 1.1352 -9.6844 2.2970 17 6 1.2710 -11.0241 2.5428 18 6 0.1302 -11.4296 3.1327 19 7 -0.6835 -10.3684 3.2357 20 6 -0.0883 -9.3196 2.7372 21 6 1.5190 -7.7552 0.7311 22 16 2.5629 -2.4991 2.9181 23 6 2.8614 -0.8135 3.3223 24 6 2.4700 -0.0352 2.3123 25 1 -0.3934 0.4417 0.7649 26 1 1.7924 -0.5138 -0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 2.6989 -4.8787 -0.4055 30 1 2.5497 -4.8818 2.3400 31 1 0.9410 -5.4346 1.8160 32 1 3.5740 -7.7738 2.9845 33 1 1.8369 -7.3543 3.3093 34 1 2.1289 -11.6376 2.3104 35 1 -0.0919 -12.4341 3.4614 36 1 -0.5049 -8.3245 2.6855 37 1 0.4885 -7.4975 0.9756 38 1 1.6616 -7.9758 -0.3268 39 1 3.2996 -0.4628 4.2451 40 1 2.5621 1.0405 2.3384 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567572_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:28 Heat of formation + Delta-G solvation = 35.321216 kcal Electronic energy + Delta-G solvation = -27113.102171 eV Core-core repulsion = 23150.995821 eV Total energy + Delta-G solvation = -3962.106349 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.08875 -40.43819 -40.16233 -38.21457 -37.26563 -36.87493 -36.29785 -33.36277 -31.56831 -30.29648 -28.60447 -28.06209 -27.15329 -24.65754 -24.43447 -22.56453 -22.03901 -21.61828 -20.59212 -19.99342 -19.68672 -18.86175 -18.51389 -17.96117 -17.36835 -17.02026 -16.68139 -16.45292 -16.16242 -15.98521 -15.75677 -15.61294 -15.35663 -15.14634 -14.77682 -14.48295 -14.31817 -14.11210 -13.91702 -13.75371 -13.66635 -13.55087 -13.22194 -13.17332 -13.05056 -12.72324 -12.63777 -12.41771 -12.28445 -12.05135 -11.88772 -11.58346 -10.85449 -10.83083 -10.74250 -10.52025 -10.47542 -9.79880 -9.39727 -5.06791 -0.84990 -0.69193 0.12019 0.46750 1.11692 1.12337 1.14169 1.48466 1.75855 1.84969 1.88389 2.33868 2.55921 2.96534 3.00474 3.23502 3.27517 3.32143 3.38843 3.54333 3.64727 3.83259 3.85102 3.88334 3.94281 3.99371 4.10013 4.19157 4.32669 4.33623 4.40868 4.46542 4.58447 4.59144 4.59527 4.67317 4.78984 4.82042 4.94066 4.95077 5.37804 5.66715 5.87122 6.27141 6.27718 7.22206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.519 6.519 2 C -0.110 4.110 3 Si 0.708 3.292 4 C 0.011 3.989 5 C -0.768 4.768 6 S 2.721 3.279 7 O -0.938 6.938 8 O -0.942 6.942 9 N -1.116 6.116 10 C 0.122 3.878 11 C -0.112 4.112 12 H 0.111 0.889 13 C -0.139 4.139 14 C 0.108 3.892 15 H 0.126 0.874 16 N -0.450 5.450 17 C -0.057 4.057 18 C -0.030 4.030 19 N -0.493 5.493 20 C 0.181 3.819 21 C -0.143 4.143 22 S 0.200 5.800 23 C -0.161 4.161 24 C -0.165 4.165 25 H 0.378 0.622 26 H 0.150 0.850 27 H -0.248 1.248 28 H -0.255 1.255 29 H 0.424 0.576 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.179 0.821 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 1.049 2.326 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.325 6.325 2 C -0.221 4.221 3 Si 0.607 3.393 4 C -0.007 4.007 5 C -0.968 4.968 6 S 2.805 3.195 7 O -0.927 6.927 8 O -0.932 6.932 9 N -0.878 5.878 10 C -0.004 4.004 11 C -0.132 4.132 12 H 0.129 0.871 13 C -0.178 4.178 14 C 0.005 3.995 15 H 0.144 0.856 16 N -0.133 5.133 17 C -0.190 4.190 18 C -0.178 4.178 19 N -0.211 5.211 20 C -0.101 4.101 21 C -0.181 4.181 22 S 0.467 5.533 23 C -0.298 4.298 24 C -0.195 4.195 25 H 0.226 0.774 26 H 0.167 0.833 27 H -0.173 1.173 28 H -0.180 1.180 29 H 0.260 0.740 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.191 0.809 35 H 0.186 0.814 36 H 0.218 0.782 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.196 0.804 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.745 0.493 2.429 8.132 hybrid contribution 0.392 1.226 -0.048 1.288 sum 8.136 1.718 2.381 8.650 Atomic orbital electron populations 1.86717 1.16520 1.80018 1.49274 1.25560 0.84797 1.13393 0.98396 0.94707 0.90972 0.72820 0.80760 1.19046 0.93733 0.91335 0.96571 1.35691 1.26712 1.14430 1.19988 1.01381 0.73463 0.71760 0.72854 1.93632 1.31830 1.83352 1.83920 1.93578 1.83860 1.77897 1.37899 1.55580 1.65812 1.39331 1.27107 1.21446 1.02298 0.91264 0.85427 1.22579 1.00133 0.92200 0.98278 0.87094 1.23498 1.03727 0.93740 0.96810 1.23049 0.91586 0.89624 0.95285 0.85649 1.45581 1.14378 1.08351 1.44956 1.22780 1.02894 0.84571 1.08725 1.22371 0.91548 0.98873 1.04991 1.70338 1.31352 0.98795 1.20609 1.24888 0.83414 1.00477 1.01305 1.23596 1.00093 0.93929 1.00456 1.83990 1.56310 1.06326 1.06710 1.26212 1.03353 0.96902 1.03357 1.20366 1.03567 1.02141 0.93411 0.77388 0.83253 1.17258 1.18020 0.74047 0.91349 0.89300 0.89418 0.88419 0.80949 0.81352 0.78215 0.88301 0.89458 0.80377 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.37 12.88 -35.23 -0.45 -1.82 16 2 C -0.11 -0.14 2.21 36.01 0.08 -0.06 16 3 Si 0.71 -0.74 30.45 -169.99 -5.18 -5.92 16 4 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -0.50 6.48 29.04 0.19 -0.31 16 6 S 2.72 4.68 5.57 -107.50 -0.60 4.08 16 7 O -0.94 -4.73 17.49 -57.18 -1.00 -5.73 16 8 O -0.94 -3.71 15.53 -57.18 -0.89 -4.60 16 9 N -1.12 2.78 6.00 -10.61 -0.06 2.72 16 10 C 0.12 -0.45 5.58 -4.04 -0.02 -0.47 16 11 C -0.11 0.58 3.79 -89.80 -0.34 0.24 16 12 H 0.11 -0.74 8.12 -51.93 -0.42 -1.16 16 13 C -0.14 0.67 7.32 -25.93 -0.19 0.48 16 14 C 0.11 -0.40 4.64 -67.12 -0.31 -0.71 16 15 H 0.13 -0.64 8.14 -51.92 -0.42 -1.06 16 16 N -0.45 0.19 2.94 -110.59 -0.33 -0.13 16 17 C -0.06 -0.02 11.58 -16.56 -0.19 -0.21 16 18 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 19 N -0.49 -2.25 11.25 -14.67 -0.16 -2.41 16 20 C 0.18 0.26 11.38 -90.38 -1.03 -0.77 16 21 C -0.14 0.57 7.19 -25.91 -0.19 0.38 16 22 S 0.20 -0.39 20.66 -107.50 -2.22 -2.61 16 23 C -0.16 0.39 11.23 29.04 0.33 0.72 16 24 C -0.16 0.24 8.74 -41.21 -0.36 -0.12 16 25 H 0.38 -0.39 8.70 45.56 0.40 0.01 16 26 H 0.15 0.30 5.80 -51.93 -0.30 0.00 16 27 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 28 H -0.26 0.07 6.81 56.52 0.39 0.45 16 29 H 0.42 -1.96 8.64 -34.47 -0.30 -2.26 16 30 H 0.07 -0.33 5.83 -51.93 -0.30 -0.63 16 31 H 0.09 -0.28 7.45 -51.93 -0.39 -0.66 16 32 H 0.09 -0.48 8.14 -51.93 -0.42 -0.90 16 33 H 0.10 -0.42 7.87 -51.93 -0.41 -0.83 16 34 H 0.17 -0.44 8.06 -52.49 -0.42 -0.86 16 35 H 0.17 0.13 8.06 -52.49 -0.42 -0.29 16 36 H 0.20 -0.26 7.44 -52.49 -0.39 -0.65 16 37 H 0.10 -0.32 6.69 -51.93 -0.35 -0.66 16 38 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 39 H 0.18 -0.92 8.06 -52.49 -0.42 -1.34 16 40 H 0.16 -0.50 5.53 -52.49 -0.29 -0.79 16 LS Contribution 354.50 15.07 5.34 5.34 Total: 0.00 -12.45 354.50 -12.85 -25.30 By element: Atomic # 1 Polarization: -8.04 SS G_CDS: -4.50 Total: -12.55 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.79 Total: -1.65 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -0.55 Total: 0.17 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -2.34 Total: -12.16 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.18 Total: -5.92 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -2.82 Total: 1.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -12.45 -12.85 -25.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567572_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.616 kcal (2) G-P(sol) polarization free energy of solvation -12.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds