Wall clock time and date at job start Mon Mar 8 2021 10:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47190 * 2 1 4 4 C 1.50699 * 109.47044 * 119.99776 * 2 1 3 5 5 C 1.33389 * 122.54185 * 75.00519 * 4 2 1 6 6 S 1.76206 * 125.19843 * 0.02562 * 5 4 2 7 7 O 1.42095 * 106.40243 * 263.54421 * 6 5 4 8 8 O 1.42092 * 106.40188 * 36.46534 * 6 5 4 9 9 N 1.65602 * 107.21553 * 150.00639 * 6 5 4 10 10 C 1.46497 * 120.00311 * 64.99690 * 9 6 5 11 11 C 1.53003 * 109.47086 * 165.00339 * 10 9 6 12 12 H 1.09000 * 112.85101 * 43.80273 * 11 10 9 13 13 C 1.53774 * 113.61438 * 175.00460 * 11 10 9 14 14 C 1.53773 * 87.08438 * 139.97644 * 13 11 10 15 15 H 1.09007 * 113.61620 * 89.11657 * 14 13 11 16 16 N 1.46503 * 113.61807 * 219.93306 * 14 13 11 17 17 C 1.36879 * 126.39617 * 239.71458 * 16 14 13 18 18 C 1.34675 * 106.81348 * 179.84180 * 17 16 14 19 19 N 1.34123 * 108.02081 * 0.41846 * 18 17 16 20 20 C 1.30491 * 109.25825 * 359.73706 * 19 18 17 21 21 C 1.53781 * 87.08409 * 334.56636 * 14 13 11 22 22 S 1.75882 * 109.59634 * 180.02562 * 5 4 2 23 23 C 1.75887 * 90.96996 * 359.97438 * 22 5 4 24 24 C 1.33386 * 109.59271 * 359.72724 * 23 22 5 25 25 H 0.96695 * 114.00385 * 300.00492 * 1 2 3 26 26 H 1.09001 * 109.47626 * 240.00326 * 2 1 3 27 27 H 1.48506 * 110.00048 * 300.00131 * 3 2 1 28 28 H 1.48502 * 109.99996 * 61.31456 * 3 2 1 29 29 H 0.96998 * 119.99899 * 245.00126 * 9 6 5 30 30 H 1.08998 * 109.47397 * 284.99941 * 10 9 6 31 31 H 1.08998 * 109.46962 * 44.99923 * 10 9 6 32 32 H 1.09005 * 113.61405 * 254.52870 * 13 11 10 33 33 H 1.09004 * 113.61598 * 25.34121 * 13 11 10 34 34 H 1.07999 * 126.59583 * 359.97438 * 17 16 14 35 35 H 1.08002 * 125.98481 * 180.19050 * 18 17 16 36 36 H 1.08000 * 125.65583 * 180.02562 * 20 19 18 37 37 H 1.09001 * 113.61549 * 270.88667 * 21 14 13 38 38 H 1.09000 * 113.61933 * 139.97641 * 21 14 13 39 39 H 1.08001 * 125.19836 * 180.02562 * 23 22 5 40 40 H 1.08000 * 122.53764 * 180.23690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8961 -2.0377 1.3573 6 16 1.2764 -3.1577 0.1463 7 8 -0.0654 -3.4452 0.5150 8 8 1.6367 -2.6203 -1.1188 9 7 2.1201 -4.5732 0.3105 10 6 1.9923 -5.3641 1.5370 11 6 2.5523 -6.7679 1.2993 12 1 3.4964 -6.7604 0.7546 13 6 2.5772 -7.6434 2.5632 14 6 2.1290 -8.8108 1.6683 15 1 2.9571 -9.3631 1.2237 16 7 1.1352 -9.6844 2.2970 17 6 1.2710 -11.0241 2.5428 18 6 0.1302 -11.4296 3.1327 19 7 -0.6835 -10.3684 3.2357 20 6 -0.0883 -9.3196 2.7372 21 6 1.5190 -7.7552 0.7311 22 16 2.5629 -2.4991 2.9181 23 6 2.8614 -0.8135 3.3223 24 6 2.4700 -0.0352 2.3123 25 1 -0.3934 0.4417 0.7649 26 1 1.7924 -0.5138 -0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 2.6989 -4.8787 -0.4055 30 1 2.5497 -4.8818 2.3400 31 1 0.9410 -5.4346 1.8160 32 1 3.5740 -7.7738 2.9845 33 1 1.8369 -7.3543 3.3093 34 1 2.1289 -11.6376 2.3104 35 1 -0.0919 -12.4341 3.4614 36 1 -0.5049 -8.3245 2.6855 37 1 0.4885 -7.4975 0.9756 38 1 1.6616 -7.9758 -0.3268 39 1 3.2996 -0.4628 4.2451 40 1 2.5621 1.0405 2.3384 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567572_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:27 Heat of formation + Delta-G solvation = 30.475489 kcal Electronic energy + Delta-G solvation = -27113.312297 eV Core-core repulsion = 23150.995821 eV Total energy + Delta-G solvation = -3962.316476 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.07058 -40.21071 -40.07593 -38.41933 -37.32464 -37.08393 -36.15402 -33.33562 -31.46481 -30.32762 -28.41437 -28.06212 -26.80144 -24.49423 -24.34568 -22.50253 -21.99980 -21.59026 -20.42222 -19.99440 -19.59183 -18.80903 -18.49218 -17.95995 -17.32334 -16.75346 -16.66829 -16.43818 -16.15847 -15.96252 -15.70916 -15.44223 -15.30532 -15.08176 -14.73348 -14.46646 -14.24716 -14.02761 -13.77439 -13.62588 -13.56569 -13.40899 -13.40016 -13.28998 -13.03572 -12.81822 -12.54921 -12.32621 -12.09736 -11.79587 -11.60389 -11.52249 -10.93879 -10.79628 -10.63529 -10.45901 -10.40773 -9.64633 -9.44616 -4.99637 -0.86470 -0.65780 0.22013 0.63396 1.12246 1.17134 1.24447 1.53456 1.83731 1.91364 1.92847 2.22088 2.49191 3.21771 3.27632 3.31387 3.45846 3.47999 3.62663 3.67868 3.84970 3.96428 4.03635 4.04793 4.15139 4.24636 4.37823 4.44443 4.46299 4.59393 4.64588 4.67563 4.71935 4.77946 4.82409 4.90313 4.98101 4.99081 5.08126 5.23825 5.46140 5.84823 5.94348 6.30945 6.33328 7.15989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.137 4.137 3 Si 0.801 3.199 4 C 0.004 3.996 5 C -0.795 4.795 6 S 2.727 3.273 7 O -0.982 6.982 8 O -0.975 6.975 9 N -1.102 6.102 10 C 0.113 3.887 11 C -0.097 4.097 12 H 0.135 0.865 13 C -0.133 4.133 14 C 0.102 3.898 15 H 0.148 0.852 16 N -0.444 5.444 17 C -0.046 4.046 18 C -0.067 4.067 19 N -0.543 5.543 20 C 0.172 3.828 21 C -0.150 4.150 22 S 0.231 5.769 23 C -0.151 4.151 24 C -0.177 4.177 25 H 0.390 0.610 26 H 0.133 0.867 27 H -0.298 1.298 28 H -0.255 1.255 29 H 0.435 0.565 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.204 0.796 35 H 0.174 0.826 36 H 0.217 0.783 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.211 0.789 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.756 1.479 3.606 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.246 4.246 3 Si 0.702 3.298 4 C -0.015 4.015 5 C -0.998 4.998 6 S 2.815 3.185 7 O -0.972 6.972 8 O -0.965 6.965 9 N -0.868 5.868 10 C -0.013 4.013 11 C -0.118 4.118 12 H 0.153 0.847 13 C -0.172 4.172 14 C 0.000 4.000 15 H 0.165 0.835 16 N -0.126 5.126 17 C -0.180 4.180 18 C -0.214 4.214 19 N -0.262 5.262 20 C -0.110 4.110 21 C -0.188 4.188 22 S 0.497 5.503 23 C -0.288 4.288 24 C -0.206 4.206 25 H 0.240 0.760 26 H 0.150 0.850 27 H -0.226 1.226 28 H -0.180 1.180 29 H 0.273 0.727 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.220 0.780 35 H 0.191 0.809 36 H 0.233 0.767 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.228 0.772 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.422 0.886 3.697 11.094 hybrid contribution -0.424 1.054 -0.436 1.217 sum 9.998 1.940 3.261 10.694 Atomic orbital electron populations 1.86667 1.17779 1.80760 1.50313 1.25958 0.84208 1.15904 0.98495 0.93677 0.89365 0.69066 0.77731 1.19147 0.94024 0.91442 0.96854 1.35464 1.28424 1.14474 1.21420 1.00681 0.73036 0.72363 0.72444 1.93576 1.34863 1.84245 1.84499 1.93527 1.84171 1.78846 1.39975 1.55227 1.65460 1.37973 1.28103 1.21663 1.02327 0.92189 0.85120 1.22562 1.00472 0.90540 0.98199 0.84749 1.23475 1.04283 0.92842 0.96594 1.23413 0.91351 0.89626 0.95593 0.83488 1.45775 1.14264 1.08474 1.44094 1.23218 1.02833 0.85009 1.06949 1.22670 0.92697 0.99121 1.06904 1.70256 1.33237 1.00208 1.22532 1.25159 0.84202 1.00565 1.01122 1.23639 0.99892 0.94480 1.00765 1.83817 1.55114 1.06808 1.04544 1.26681 1.01795 0.96306 1.04011 1.20497 1.03960 1.03179 0.92976 0.75995 0.84973 1.22580 1.18042 0.72670 0.89883 0.90263 0.87876 0.89123 0.77965 0.80916 0.76713 0.89579 0.89054 0.77189 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.08 12.88 -148.98 -1.92 -6.00 16 2 C -0.14 -0.54 2.21 71.24 0.16 -0.38 16 3 Si 0.80 -1.57 30.45 68.60 2.09 0.52 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.10 16 5 C -0.80 -1.45 6.48 66.72 0.43 -1.02 16 6 S 2.73 14.17 5.57 -56.49 -0.31 13.86 16 7 O -0.98 -12.44 17.49 -128.00 -2.24 -14.67 16 8 O -0.98 -10.10 15.53 -128.00 -1.99 -12.09 16 9 N -1.10 5.10 6.00 -187.49 -1.12 3.98 16 10 C 0.11 -0.88 5.58 86.38 0.48 -0.40 16 11 C -0.10 1.16 3.79 -10.27 -0.04 1.12 16 12 H 0.13 -2.17 8.12 -2.39 -0.02 -2.19 16 13 C -0.13 1.50 7.32 31.12 0.23 1.73 16 14 C 0.10 -0.90 4.64 45.51 0.21 -0.68 16 15 H 0.15 -1.89 8.14 -2.38 -0.02 -1.91 16 16 N -0.44 0.51 2.94 -503.80 -1.48 -0.97 16 17 C -0.05 -0.02 11.58 83.09 0.96 0.95 16 18 C -0.07 -0.43 11.87 83.53 0.99 0.56 16 19 N -0.54 -5.91 11.25 -200.31 -2.25 -8.17 16 20 C 0.17 0.68 11.38 180.26 2.05 2.73 16 21 C -0.15 1.27 7.19 31.12 0.22 1.50 16 22 S 0.23 -1.19 20.66 -56.49 -1.17 -2.36 16 23 C -0.15 1.09 11.23 66.72 0.75 1.84 16 24 C -0.18 0.77 8.74 21.22 0.19 0.95 16 25 H 0.39 -0.13 8.70 -74.06 -0.64 -0.78 16 26 H 0.13 0.89 5.80 -2.39 -0.01 0.87 16 27 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 28 H -0.26 0.52 6.81 99.48 0.68 1.20 16 29 H 0.43 -4.06 8.64 -96.75 -0.84 -4.90 16 30 H 0.08 -0.89 5.83 -2.39 -0.01 -0.90 16 31 H 0.08 -0.43 7.45 -2.39 -0.02 -0.45 16 32 H 0.10 -1.41 8.14 -2.38 -0.02 -1.43 16 33 H 0.09 -0.84 7.87 -2.38 -0.02 -0.86 16 34 H 0.20 -1.38 8.06 -2.91 -0.02 -1.40 16 35 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.22 -0.26 7.44 -2.91 -0.02 -0.28 16 37 H 0.09 -0.48 6.69 -2.39 -0.02 -0.50 16 38 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.21 -2.97 8.06 -2.91 -0.02 -2.99 16 40 H 0.18 -1.49 5.53 -2.91 -0.02 -1.51 16 Total: 0.00 -32.27 354.50 -4.23 -36.50 By element: Atomic # 1 Polarization: -19.04 SS G_CDS: -0.36 Total: -19.40 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 6.53 Total: 8.79 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -4.86 Total: -5.16 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -6.15 Total: -32.76 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.09 Total: 0.52 kcal Atomic # 16 Polarization: 12.98 SS G_CDS: -1.48 Total: 11.50 kcal Total: -32.27 -4.23 -36.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567572_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.974 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds