Wall clock time and date at job start Mon Mar 8 2021 10:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47394 * 2 1 4 4 C 1.50702 * 109.47137 * 120.00255 * 2 1 3 5 5 C 1.33389 * 125.20312 * 39.34141 * 4 2 1 6 6 S 1.76204 * 122.53912 * 359.97438 * 5 4 2 7 7 O 1.42096 * 106.40567 * 52.96035 * 6 5 4 8 8 O 1.42101 * 106.40037 * 280.04103 * 6 5 4 9 9 N 1.65599 * 107.21724 * 166.50314 * 6 5 4 10 10 C 1.46497 * 120.00350 * 68.67178 * 9 6 5 11 11 C 1.53001 * 109.47092 * 162.82645 * 10 9 6 12 12 H 1.08999 * 112.85288 * 43.80344 * 11 10 9 13 13 C 1.53788 * 113.61283 * 174.99908 * 11 10 9 14 14 C 1.53783 * 87.07974 * 139.97769 * 13 11 10 15 15 H 1.08997 * 113.60782 * 89.12190 * 14 13 11 16 16 N 1.46502 * 113.61108 * 219.93346 * 14 13 11 17 17 C 1.36881 * 126.39608 * 239.99988 * 16 14 13 18 18 C 1.34668 * 106.81888 * 179.97438 * 17 16 14 19 19 N 1.34129 * 108.01780 * 0.02562 * 18 17 16 20 20 C 1.30498 * 109.25798 * 359.71990 * 19 18 17 21 21 C 1.53775 * 87.08297 * 334.56601 * 14 13 11 22 22 C 1.38422 * 114.92323 * 180.24629 * 5 4 2 23 23 C 1.33390 * 114.92010 * 359.49913 * 22 5 4 24 24 S 1.75877 * 125.20336 * 219.32131 * 4 2 1 25 25 H 0.96702 * 113.99606 * 306.78677 * 1 2 3 26 26 H 1.09005 * 109.47029 * 239.99661 * 2 1 3 27 27 H 1.48498 * 110.00103 * 300.00390 * 3 2 1 28 28 H 1.48504 * 109.99716 * 61.31870 * 3 2 1 29 29 H 0.97005 * 119.99665 * 248.94224 * 9 6 5 30 30 H 1.09002 * 109.46973 * 282.82511 * 10 9 6 31 31 H 1.09002 * 109.47081 * 42.82326 * 10 9 6 32 32 H 1.08994 * 113.61545 * 254.53201 * 13 11 10 33 33 H 1.09009 * 113.61126 * 25.43149 * 13 11 10 34 34 H 1.08006 * 126.59182 * 359.97316 * 17 16 14 35 35 H 1.07998 * 125.99050 * 179.97438 * 18 17 16 36 36 H 1.07998 * 125.65112 * 180.29290 * 20 19 18 37 37 H 1.09001 * 113.61554 * 270.88487 * 21 14 13 38 38 H 1.09003 * 113.61608 * 139.97894 * 21 14 13 39 39 H 1.08002 * 122.53913 * 179.72583 * 22 5 4 40 40 H 1.07995 * 125.20719 * 180.19947 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.3930 -1.8119 1.7561 6 16 -0.0190 -2.6023 1.0587 7 8 0.2828 -2.8269 -0.3116 8 8 -1.1500 -1.8604 1.4939 9 7 -0.1413 -4.0967 1.7617 10 6 -0.4964 -4.2131 3.1782 11 6 -0.9572 -5.6420 3.4727 12 1 -0.3209 -6.3960 3.0093 13 6 -1.2385 -5.9040 4.9617 14 6 -2.4561 -6.7254 4.5063 15 1 -2.2307 -7.7764 4.3253 16 7 -3.6406 -6.5343 5.3470 17 6 -4.2997 -7.5034 6.0542 18 6 -5.3242 -6.8974 6.6840 19 7 -5.2919 -5.5939 6.3695 20 6 -4.2828 -5.3681 5.5735 21 6 -2.4590 -5.8672 3.2303 22 6 2.0239 -2.2835 2.8944 23 6 3.0810 -1.5710 3.2871 24 16 3.3175 -0.2145 2.1927 25 1 -0.3933 0.5290 0.7075 26 1 1.7924 -0.5139 -0.8900 27 1 1.5616 2.4679 -1.2084 28 1 1.5880 2.4584 1.2243 29 1 0.0261 -4.8949 1.2364 30 1 0.3737 -3.9783 3.7913 31 1 -1.3023 -3.5165 3.4091 32 1 -0.4691 -6.4993 5.4533 33 1 -1.5019 -5.0060 5.5209 34 1 -4.0467 -8.5525 6.0985 35 1 -6.0459 -7.3771 7.3286 36 1 -4.0081 -4.4080 5.1621 37 1 -3.0561 -4.9593 3.3161 38 1 -2.6750 -6.4330 2.3240 39 1 1.6879 -3.1638 3.4223 40 1 3.6948 -1.7907 4.1481 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567572_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:32 Heat of formation + Delta-G solvation = 36.510335 kcal Electronic energy + Delta-G solvation = -27321.637740 eV Core-core repulsion = 23359.582954 eV Total energy + Delta-G solvation = -3962.054785 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.08027 -40.40950 -39.75131 -38.05482 -37.86157 -36.66867 -36.16672 -33.34368 -31.90943 -30.28843 -28.54553 -27.62818 -27.13117 -24.79923 -24.40589 -22.49601 -21.91674 -21.76706 -20.75369 -20.00600 -19.41869 -18.81504 -18.35692 -17.80960 -17.38420 -17.23311 -16.85936 -16.66343 -16.12488 -15.80372 -15.62260 -15.50386 -15.22158 -15.10396 -14.75039 -14.45342 -14.26012 -14.14304 -14.01256 -13.88201 -13.61517 -13.52887 -13.10454 -12.97548 -12.87240 -12.73309 -12.58931 -12.38307 -12.26626 -12.03657 -11.85624 -11.61721 -11.26301 -10.83112 -10.71109 -10.46654 -10.20514 -9.86348 -9.39222 -5.28802 -0.67647 -0.56306 0.26843 0.56491 0.92555 1.06731 1.12963 1.41494 1.73483 1.78488 1.94729 2.34301 2.73296 2.97619 3.02658 3.04303 3.21357 3.29848 3.33925 3.65272 3.68953 3.81223 3.84713 3.89962 3.96504 3.98504 4.16009 4.23078 4.29035 4.35169 4.38390 4.52446 4.55233 4.59618 4.63041 4.72505 4.75870 4.83046 4.97106 5.01038 5.38686 5.76462 5.87656 6.10108 6.27855 7.22673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.078 4.078 3 Si 0.679 3.321 4 C -0.098 4.098 5 C -0.666 4.666 6 S 2.721 3.279 7 O -0.945 6.945 8 O -0.946 6.946 9 N -1.120 6.120 10 C 0.121 3.879 11 C -0.114 4.114 12 H 0.109 0.891 13 C -0.139 4.139 14 C 0.108 3.892 15 H 0.125 0.875 16 N -0.450 5.450 17 C -0.058 4.058 18 C -0.030 4.030 19 N -0.494 5.494 20 C 0.181 3.819 21 C -0.142 4.142 22 C -0.093 4.093 23 C -0.209 4.209 24 S 0.164 5.836 25 H 0.388 0.612 26 H 0.150 0.850 27 H -0.227 1.227 28 H -0.239 1.239 29 H 0.421 0.579 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.154 0.846 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 -2.427 1.668 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.188 4.188 3 Si 0.575 3.425 4 C -0.219 4.219 5 C -0.765 4.765 6 S 2.806 3.194 7 O -0.935 6.935 8 O -0.936 6.936 9 N -0.881 5.881 10 C -0.005 4.005 11 C -0.134 4.134 12 H 0.127 0.873 13 C -0.178 4.178 14 C 0.004 3.996 15 H 0.143 0.857 16 N -0.132 5.132 17 C -0.190 4.190 18 C -0.178 4.178 19 N -0.211 5.211 20 C -0.101 4.101 21 C -0.180 4.180 22 C -0.121 4.121 23 C -0.344 4.344 24 S 0.428 5.572 25 H 0.238 0.762 26 H 0.167 0.833 27 H -0.150 1.150 28 H -0.162 1.162 29 H 0.256 0.744 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.218 0.782 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.171 0.829 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.803 0.343 0.821 7.854 hybrid contribution -0.573 -2.421 0.681 2.579 sum 7.230 -2.078 1.502 7.671 Atomic orbital electron populations 1.86670 1.16256 1.73093 1.56859 1.25052 0.84830 1.12342 0.96607 0.95123 0.90756 0.73237 0.83376 1.24957 0.99444 0.97380 1.00160 1.29920 1.26089 1.10130 1.10343 1.01428 0.73366 0.71907 0.72737 1.93596 1.85142 1.84600 1.30184 1.93571 1.47017 1.70326 1.82642 1.55649 1.86636 1.25588 1.20261 1.21493 1.00751 0.97721 0.80503 1.22607 0.96826 0.97067 0.96893 0.87283 1.23500 0.97100 1.01029 0.96150 1.23060 0.83705 1.01566 0.91276 0.85711 1.45584 1.23202 1.08503 1.35954 1.22780 0.98549 0.95738 1.01937 1.22367 1.00350 0.90511 1.04555 1.70342 1.19051 1.17059 1.14687 1.24886 0.92592 0.91566 1.01020 1.23582 0.96299 1.00816 0.97321 1.19884 0.95770 1.01426 0.95054 1.25926 1.03361 1.00117 1.05019 1.84254 1.26673 1.27197 1.19096 0.76163 0.83258 1.15001 1.16233 0.74437 0.91040 0.89312 0.89529 0.88461 0.80961 0.81356 0.78214 0.88328 0.89558 0.82906 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.29 9.71 -59.58 -0.58 -1.87 16 2 C -0.08 -0.04 2.41 36.01 0.09 0.04 16 3 Si 0.68 -0.91 31.08 -169.99 -5.28 -6.19 16 4 C -0.10 -0.06 5.78 -36.00 -0.21 -0.26 16 5 C -0.67 -0.45 5.71 -41.21 -0.24 -0.69 16 6 S 2.72 4.65 4.23 -107.50 -0.46 4.20 16 7 O -0.95 -4.63 17.18 -61.58 -1.06 -5.69 16 8 O -0.95 -3.88 16.08 -65.15 -1.05 -4.93 16 9 N -1.12 2.64 5.70 -10.61 -0.06 2.58 16 10 C 0.12 -0.47 5.57 -4.04 -0.02 -0.49 16 11 C -0.11 0.58 3.80 -89.80 -0.34 0.24 16 12 H 0.11 -0.70 8.12 -51.93 -0.42 -1.12 16 13 C -0.14 0.65 7.32 -25.91 -0.19 0.46 16 14 C 0.11 -0.37 4.64 -67.12 -0.31 -0.68 16 15 H 0.13 -0.59 8.14 -51.93 -0.42 -1.02 16 16 N -0.45 0.10 2.94 -110.59 -0.33 -0.23 16 17 C -0.06 -0.03 11.58 -16.56 -0.19 -0.22 16 18 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 19 N -0.49 -2.32 11.25 -14.67 -0.17 -2.49 16 20 C 0.18 0.29 11.36 -90.38 -1.03 -0.73 16 21 C -0.14 0.53 7.19 -25.92 -0.19 0.34 16 22 C -0.09 0.13 9.52 -41.21 -0.39 -0.26 16 23 C -0.21 0.40 11.23 29.04 0.33 0.73 16 24 S 0.16 -0.25 20.86 -107.50 -2.24 -2.49 16 25 H 0.39 -0.05 8.48 45.56 0.39 0.33 16 26 H 0.15 -0.02 7.96 -51.93 -0.41 -0.43 16 27 H -0.23 -0.22 7.11 56.52 0.40 0.18 16 28 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 29 H 0.42 -1.73 8.65 -34.47 -0.30 -2.03 16 30 H 0.07 -0.40 5.42 -51.93 -0.28 -0.68 16 31 H 0.09 -0.28 7.33 -51.93 -0.38 -0.66 16 32 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 33 H 0.10 -0.40 7.85 -51.92 -0.41 -0.81 16 34 H 0.17 -0.40 8.06 -52.48 -0.42 -0.82 16 35 H 0.17 0.15 8.06 -52.49 -0.42 -0.27 16 36 H 0.20 -0.23 7.46 -52.49 -0.39 -0.62 16 37 H 0.10 -0.29 6.70 -51.93 -0.35 -0.63 16 38 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 39 H 0.15 -0.62 4.86 -52.49 -0.25 -0.88 16 40 H 0.18 -0.77 8.06 -52.49 -0.42 -1.19 16 LS Contribution 352.67 15.07 5.31 5.31 Total: 0.00 -12.20 352.67 -13.35 -25.55 By element: Atomic # 1 Polarization: -7.38 SS G_CDS: -4.54 Total: -11.93 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.90 Total: -1.83 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -0.55 Total: -0.13 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -2.68 Total: -12.49 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.28 Total: -6.19 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -2.70 Total: 1.71 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -12.20 -13.35 -25.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567572_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.059 kcal (2) G-P(sol) polarization free energy of solvation -12.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds