Wall clock time and date at job start Mon Mar 8 2021 10:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86293 * 109.47394 * 2 1 4 4 C 1.50702 * 109.47137 * 120.00255 * 2 1 3 5 5 C 1.33389 * 125.20312 * 39.34141 * 4 2 1 6 6 S 1.76204 * 122.53912 * 359.97438 * 5 4 2 7 7 O 1.42096 * 106.40567 * 52.96035 * 6 5 4 8 8 O 1.42101 * 106.40037 * 280.04103 * 6 5 4 9 9 N 1.65599 * 107.21724 * 166.50314 * 6 5 4 10 10 C 1.46497 * 120.00350 * 68.67178 * 9 6 5 11 11 C 1.53001 * 109.47092 * 162.82645 * 10 9 6 12 12 H 1.08999 * 112.85288 * 43.80344 * 11 10 9 13 13 C 1.53788 * 113.61283 * 174.99908 * 11 10 9 14 14 C 1.53783 * 87.07974 * 139.97769 * 13 11 10 15 15 H 1.08997 * 113.60782 * 89.12190 * 14 13 11 16 16 N 1.46502 * 113.61108 * 219.93346 * 14 13 11 17 17 C 1.36881 * 126.39608 * 239.99988 * 16 14 13 18 18 C 1.34668 * 106.81888 * 179.97438 * 17 16 14 19 19 N 1.34129 * 108.01780 * 0.02562 * 18 17 16 20 20 C 1.30498 * 109.25798 * 359.71990 * 19 18 17 21 21 C 1.53775 * 87.08297 * 334.56601 * 14 13 11 22 22 C 1.38422 * 114.92323 * 180.24629 * 5 4 2 23 23 C 1.33390 * 114.92010 * 359.49913 * 22 5 4 24 24 S 1.75877 * 125.20336 * 219.32131 * 4 2 1 25 25 H 0.96702 * 113.99606 * 306.78677 * 1 2 3 26 26 H 1.09005 * 109.47029 * 239.99661 * 2 1 3 27 27 H 1.48498 * 110.00103 * 300.00390 * 3 2 1 28 28 H 1.48504 * 109.99716 * 61.31870 * 3 2 1 29 29 H 0.97005 * 119.99665 * 248.94224 * 9 6 5 30 30 H 1.09002 * 109.46973 * 282.82511 * 10 9 6 31 31 H 1.09002 * 109.47081 * 42.82326 * 10 9 6 32 32 H 1.08994 * 113.61545 * 254.53201 * 13 11 10 33 33 H 1.09009 * 113.61126 * 25.43149 * 13 11 10 34 34 H 1.08006 * 126.59182 * 359.97316 * 17 16 14 35 35 H 1.07998 * 125.99050 * 179.97438 * 18 17 16 36 36 H 1.07998 * 125.65112 * 180.29290 * 20 19 18 37 37 H 1.09001 * 113.61554 * 270.88487 * 21 14 13 38 38 H 1.09003 * 113.61608 * 139.97894 * 21 14 13 39 39 H 1.08002 * 122.53913 * 179.72583 * 22 5 4 40 40 H 1.07995 * 125.20719 * 180.19947 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.3930 -1.8119 1.7561 6 16 -0.0190 -2.6023 1.0587 7 8 0.2828 -2.8269 -0.3116 8 8 -1.1500 -1.8604 1.4939 9 7 -0.1413 -4.0967 1.7617 10 6 -0.4964 -4.2131 3.1782 11 6 -0.9572 -5.6420 3.4727 12 1 -0.3209 -6.3960 3.0093 13 6 -1.2385 -5.9040 4.9617 14 6 -2.4561 -6.7254 4.5063 15 1 -2.2307 -7.7764 4.3253 16 7 -3.6406 -6.5343 5.3470 17 6 -4.2997 -7.5034 6.0542 18 6 -5.3242 -6.8974 6.6840 19 7 -5.2919 -5.5939 6.3695 20 6 -4.2828 -5.3681 5.5735 21 6 -2.4590 -5.8672 3.2303 22 6 2.0239 -2.2835 2.8944 23 6 3.0810 -1.5710 3.2871 24 16 3.3175 -0.2145 2.1927 25 1 -0.3933 0.5290 0.7075 26 1 1.7924 -0.5139 -0.8900 27 1 1.5616 2.4679 -1.2084 28 1 1.5880 2.4584 1.2243 29 1 0.0261 -4.8949 1.2364 30 1 0.3737 -3.9783 3.7913 31 1 -1.3023 -3.5165 3.4091 32 1 -0.4691 -6.4993 5.4533 33 1 -1.5019 -5.0060 5.5209 34 1 -4.0467 -8.5525 6.0985 35 1 -6.0459 -7.3771 7.3286 36 1 -4.0081 -4.4080 5.1621 37 1 -3.0561 -4.9593 3.3161 38 1 -2.6750 -6.4330 2.3240 39 1 1.6879 -3.1638 3.4223 40 1 3.6948 -1.7907 4.1481 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567572_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:31 Heat of formation + Delta-G solvation = 33.633767 kcal Electronic energy + Delta-G solvation = -27321.762477 eV Core-core repulsion = 23359.582954 eV Total energy + Delta-G solvation = -3962.179523 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.07290 -40.15206 -39.71124 -38.24923 -37.87737 -36.86789 -36.02701 -33.32402 -31.84188 -30.33027 -28.34117 -27.57868 -26.78924 -24.67352 -24.31305 -22.46108 -21.85508 -21.70426 -20.66209 -19.91954 -19.38570 -18.72062 -18.36489 -17.76640 -17.34117 -17.15418 -16.67488 -16.61183 -16.12995 -15.78722 -15.53082 -15.45119 -15.14980 -14.97191 -14.71726 -14.43798 -14.24327 -14.14932 -13.89446 -13.57412 -13.55506 -13.32453 -13.22606 -13.10632 -12.96282 -12.77847 -12.51359 -12.31248 -12.07362 -11.79656 -11.61912 -11.50218 -11.26699 -10.94472 -10.49958 -10.45922 -10.11903 -9.72855 -9.45224 -5.21759 -0.72954 -0.50320 0.36880 0.66219 1.00720 1.11866 1.17331 1.47423 1.77219 1.88751 2.00085 2.21491 2.68064 3.02000 3.26696 3.30176 3.34370 3.56039 3.64720 3.72502 3.84849 3.98045 4.03751 4.04629 4.15104 4.25950 4.31856 4.43042 4.48064 4.62410 4.64133 4.67828 4.78238 4.82065 4.84676 4.91221 5.00284 5.02283 5.16638 5.26255 5.47026 5.84303 6.02689 6.10907 6.30629 7.15398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.099 4.099 3 Si 0.764 3.236 4 C -0.124 4.124 5 C -0.675 4.675 6 S 2.728 3.272 7 O -0.987 6.987 8 O -0.980 6.980 9 N -1.108 6.108 10 C 0.112 3.888 11 C -0.099 4.099 12 H 0.131 0.869 13 C -0.132 4.132 14 C 0.101 3.899 15 H 0.145 0.855 16 N -0.444 5.444 17 C -0.048 4.048 18 C -0.067 4.067 19 N -0.544 5.544 20 C 0.172 3.828 21 C -0.150 4.150 22 C -0.104 4.104 23 C -0.207 4.207 24 S 0.189 5.811 25 H 0.394 0.606 26 H 0.148 0.852 27 H -0.263 1.263 28 H -0.257 1.257 29 H 0.430 0.570 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.203 0.797 35 H 0.174 0.826 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.179 0.821 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.212 -3.610 2.674 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.208 4.208 3 Si 0.662 3.338 4 C -0.245 4.245 5 C -0.776 4.776 6 S 2.816 3.184 7 O -0.977 6.977 8 O -0.969 6.969 9 N -0.872 5.872 10 C -0.013 4.013 11 C -0.119 4.119 12 H 0.149 0.851 13 C -0.171 4.171 14 C -0.001 4.001 15 H 0.163 0.837 16 N -0.126 5.126 17 C -0.181 4.181 18 C -0.213 4.213 19 N -0.263 5.263 20 C -0.110 4.110 21 C -0.188 4.188 22 C -0.131 4.131 23 C -0.342 4.342 24 S 0.453 5.547 25 H 0.245 0.755 26 H 0.165 0.835 27 H -0.188 1.188 28 H -0.181 1.181 29 H 0.268 0.732 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.220 0.780 35 H 0.191 0.809 36 H 0.233 0.767 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.196 0.804 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 10.133 -0.877 1.808 10.331 hybrid contribution -1.275 -2.074 0.388 2.466 sum 8.858 -2.951 2.196 9.592 Atomic orbital electron populations 1.86636 1.17706 1.73686 1.57386 1.25435 0.84001 1.14313 0.97030 0.94215 0.89273 0.70132 0.80203 1.25079 1.00829 0.97883 1.00684 1.29822 1.25893 1.10468 1.11431 1.00751 0.73208 0.72410 0.72051 1.93534 1.85707 1.85371 1.33057 1.93524 1.48878 1.71603 1.82930 1.55302 1.86451 1.24385 1.21061 1.21730 1.01554 0.98489 0.79548 1.22578 0.95935 0.96681 0.96717 0.85081 1.23465 0.96640 1.00702 0.96246 1.23431 0.82894 1.02972 0.90849 0.83694 1.45781 1.23584 1.07686 1.35551 1.23217 0.97432 0.96934 1.00539 1.22666 1.02015 0.90463 1.06204 1.70261 1.21003 1.18460 1.16548 1.25163 0.92330 0.92825 1.00676 1.23630 0.97427 1.00383 0.97384 1.20148 0.95904 1.02487 0.94563 1.26354 1.03215 0.99276 1.05377 1.84126 1.24954 1.27198 1.18376 0.75472 0.83496 1.18821 1.18140 0.73249 0.88738 0.90371 0.87999 0.89104 0.78018 0.80906 0.76674 0.89605 0.89404 0.80445 0.77885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -3.97 9.71 -125.70 -1.22 -5.19 16 2 C -0.10 -0.25 2.41 71.24 0.17 -0.08 16 3 Si 0.76 -1.49 31.08 68.60 2.13 0.64 16 4 C -0.12 -0.19 5.78 24.59 0.14 -0.05 16 5 C -0.67 -1.04 5.71 21.22 0.12 -0.92 16 6 S 2.73 12.58 4.23 -56.49 -0.24 12.34 16 7 O -0.99 -11.61 17.18 -123.78 -2.13 -13.74 16 8 O -0.98 -9.95 16.08 -120.37 -1.94 -11.89 16 9 N -1.11 5.54 5.70 -187.49 -1.07 4.47 16 10 C 0.11 -0.99 5.57 86.38 0.48 -0.51 16 11 C -0.10 1.19 3.80 -10.26 -0.04 1.15 16 12 H 0.13 -2.09 8.12 -2.39 -0.02 -2.11 16 13 C -0.13 1.49 7.32 31.12 0.23 1.72 16 14 C 0.10 -0.84 4.64 45.52 0.21 -0.63 16 15 H 0.15 -1.77 8.14 -2.39 -0.02 -1.79 16 16 N -0.44 0.37 2.94 -503.81 -1.48 -1.12 16 17 C -0.05 -0.03 11.58 83.09 0.96 0.93 16 18 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 19 N -0.54 -6.03 11.25 -200.32 -2.25 -8.28 16 20 C 0.17 0.72 11.36 180.26 2.05 2.76 16 21 C -0.15 1.21 7.19 31.12 0.22 1.44 16 22 C -0.10 0.44 9.52 21.22 0.20 0.64 16 23 C -0.21 1.23 11.23 66.72 0.75 1.98 16 24 S 0.19 -0.76 20.86 -56.49 -1.18 -1.94 16 25 H 0.39 0.90 8.48 -74.06 -0.63 0.27 16 26 H 0.15 0.27 7.96 -2.38 -0.02 0.25 16 27 H -0.26 -0.94 7.11 99.48 0.71 -0.23 16 28 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 29 H 0.43 -3.79 8.65 -96.74 -0.84 -4.63 16 30 H 0.09 -1.27 5.42 -2.39 -0.01 -1.29 16 31 H 0.08 -0.48 7.33 -2.39 -0.02 -0.50 16 32 H 0.10 -1.39 8.14 -2.39 -0.02 -1.41 16 33 H 0.09 -0.86 7.85 -2.38 -0.02 -0.88 16 34 H 0.20 -1.29 8.06 -2.91 -0.02 -1.32 16 35 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.22 -0.23 7.46 -2.91 -0.02 -0.25 16 37 H 0.09 -0.45 6.70 -2.39 -0.02 -0.46 16 38 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.18 -1.87 4.86 -2.91 -0.01 -1.89 16 40 H 0.20 -2.47 8.06 -2.91 -0.02 -2.49 16 Total: 0.00 -30.90 352.67 -3.20 -34.10 By element: Atomic # 1 Polarization: -18.04 SS G_CDS: -0.32 Total: -18.36 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.49 Total: 8.97 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -4.81 Total: -4.93 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -5.28 Total: -30.82 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: 2.13 Total: 0.64 kcal Atomic # 16 Polarization: 11.82 SS G_CDS: -1.42 Total: 10.40 kcal Total: -30.90 -3.20 -34.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567572_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.732 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds