Wall clock time and date at job start Mon Mar 8 2021 10:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33391 * 125.20406 * 2 1 4 4 C 1.50708 * 122.53664 * 359.96771 * 3 2 1 5 5 O 1.42905 * 109.46977 * 73.69765 * 4 3 2 6 6 Si 1.86299 * 109.47300 * 313.69670 * 4 3 2 7 7 C 1.38415 * 114.92335 * 180.20686 * 3 2 1 8 8 S 1.76204 * 122.54199 * 179.75950 * 7 3 2 9 9 O 1.42093 * 106.40687 * 161.82642 * 8 7 3 10 10 O 1.42109 * 106.40233 * 28.90235 * 8 7 3 11 11 N 1.65598 * 107.21846 * 275.36841 * 8 7 3 12 12 C 1.46499 * 120.00315 * 65.26829 * 11 8 7 13 13 C 1.53007 * 109.47234 * 164.72812 * 12 11 8 14 14 H 1.09003 * 112.84700 * 316.19620 * 13 12 11 15 15 C 1.53772 * 113.61418 * 87.50322 * 13 12 11 16 16 C 1.53783 * 87.08109 * 139.97916 * 15 13 12 17 17 H 1.09007 * 113.68741 * 89.12340 * 16 15 13 18 18 N 1.46496 * 113.62015 * 220.01821 * 16 15 13 19 19 C 1.36881 * 126.40047 * 217.21753 * 18 16 15 20 20 C 1.34673 * 106.81699 * 179.84128 * 19 18 16 21 21 N 1.34122 * 108.02097 * 0.41465 * 20 19 18 22 22 C 1.30503 * 109.25853 * 359.73866 * 21 20 19 23 23 C 1.53771 * 87.08175 * 334.57001 * 16 15 13 24 24 C 1.33388 * 114.92439 * 359.49019 * 7 3 2 25 25 C 1.50699 * 125.20620 * 180.29030 * 24 7 3 26 26 S 1.75883 * 109.58943 * 0.27093 * 24 7 3 27 27 H 1.09002 * 109.46909 * 184.29089 * 1 2 3 28 28 H 1.09004 * 109.46963 * 304.28443 * 1 2 3 29 29 H 1.08997 * 109.47302 * 64.29099 * 1 2 3 30 30 H 1.08995 * 109.47106 * 193.69407 * 4 3 2 31 31 H 0.96695 * 114.00229 * 65.64888 * 5 4 3 32 32 H 1.48500 * 110.00169 * 175.04445 * 6 4 3 33 33 H 1.48501 * 109.99601 * 296.36324 * 6 4 3 34 34 H 0.97005 * 120.00011 * 244.99621 * 11 8 7 35 35 H 1.09002 * 109.47436 * 284.73074 * 12 11 8 36 36 H 1.09006 * 109.46873 * 44.73231 * 12 11 8 37 37 H 1.08999 * 113.61879 * 254.53116 * 15 13 12 38 38 H 1.09004 * 113.61738 * 25.43463 * 15 13 12 39 39 H 1.08000 * 126.58947 * 359.97250 * 19 18 16 40 40 H 1.08000 * 125.98533 * 180.11438 * 20 19 18 41 41 H 1.07995 * 125.65271 * 180.02562 * 22 21 20 42 42 H 1.09006 * 113.61879 * 270.87898 * 23 16 15 43 43 H 1.09001 * 113.62252 * 139.97923 * 23 16 15 44 44 H 1.08992 * 109.46911 * 90.00290 * 25 24 7 45 45 H 1.09007 * 109.46998 * 210.00665 * 25 24 7 46 46 H 1.08997 * 109.47064 * 329.99948 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7051 2.4847 -0.0007 5 8 1.1741 2.7827 1.2921 6 14 0.3474 2.5994 -1.2713 7 6 3.6379 0.8429 -0.0045 8 16 4.8356 2.1353 -0.0116 9 8 6.0599 1.5503 0.4102 10 8 4.2354 3.2422 0.6472 11 7 5.0544 2.5922 -1.5882 12 6 3.9542 3.2122 -2.3307 13 6 4.5024 3.8745 -3.5964 14 1 5.4197 4.4353 -3.4172 15 6 4.5846 2.9243 -4.8026 16 6 4.0959 4.1013 -5.6633 17 1 4.9018 4.7243 -6.0513 18 7 3.1300 3.7133 -6.6941 19 6 3.0426 4.2270 -7.9599 20 6 2.0247 3.5899 -8.5695 21 7 1.4989 2.7177 -7.6967 22 6 2.1559 2.7861 -6.5712 23 6 3.4442 4.6610 -4.3879 24 6 3.9752 -0.4476 0.0026 25 6 5.3861 -0.9769 0.0059 26 16 2.5211 -1.4371 0.0079 27 1 -0.3633 -1.0248 0.0769 28 1 -0.3633 0.5789 0.8491 29 1 -0.3634 0.4458 -0.9259 30 1 2.4916 3.1991 -0.2439 31 1 1.8411 2.8267 1.9907 32 1 -0.3037 3.9321 -1.1999 33 1 0.9037 2.3781 -2.6303 34 1 5.9124 2.4529 -2.0189 35 1 3.2262 2.4491 -2.6061 36 1 3.4730 3.9649 -1.7060 37 1 5.5995 2.6034 -5.0374 38 1 3.8781 2.0956 -4.7547 39 1 3.6707 4.9941 -8.3881 40 1 1.6875 3.7560 -9.5820 41 1 1.9543 2.1982 -5.6879 42 1 2.4259 4.3072 -4.2264 43 1 3.5384 5.7423 -4.2877 44 1 5.7259 -1.0989 1.0343 45 1 5.4140 -1.9405 -0.5029 46 1 6.0391 -0.2740 -0.5115 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567572_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:41 Heat of formation + Delta-G solvation = 27.871644 kcal Electronic energy + Delta-G solvation = -32592.739412 eV Core-core repulsion = 28319.234787 eV Total energy + Delta-G solvation = -4273.504625 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.101 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.14792 -40.53344 -40.25248 -38.63235 -37.05735 -36.94370 -36.30986 -34.39726 -33.41088 -30.94286 -30.35296 -28.69732 -28.01553 -27.22417 -26.00788 -24.67883 -23.29665 -22.56475 -21.98709 -20.97576 -20.47337 -20.02296 -19.25147 -18.68313 -18.50841 -18.15567 -17.47963 -17.20444 -16.72214 -16.33176 -16.16775 -15.82566 -15.56484 -15.48068 -15.13331 -14.99515 -14.90451 -14.81304 -14.54239 -14.47545 -14.30197 -14.10693 -13.99550 -13.87341 -13.68053 -13.53720 -13.48657 -13.30094 -13.19780 -12.94064 -12.80210 -12.55879 -12.49638 -12.15290 -12.00460 -11.93645 -11.72967 -11.24143 -11.02493 -10.89799 -10.86102 -10.53142 -10.07624 -9.58883 -9.45284 -4.86107 -0.88384 -0.48826 0.31710 0.63338 0.81036 1.06522 1.30974 1.50970 1.71577 1.85622 1.95902 2.28019 2.52817 2.91142 2.97477 3.07697 3.26752 3.27953 3.40090 3.59821 3.64447 3.75121 3.81647 3.84863 3.89847 3.92636 4.01366 4.12388 4.14229 4.16241 4.24857 4.28892 4.35650 4.39251 4.40805 4.46247 4.53256 4.56004 4.56948 4.63056 4.77007 4.81580 4.89771 4.90951 4.98821 5.15681 5.32226 5.63658 5.81865 6.20809 6.60627 7.15939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.168 4.168 3 C -0.081 4.081 4 C -0.078 4.078 5 O -0.527 6.527 6 Si 0.697 3.303 7 C -0.687 4.687 8 S 2.705 3.295 9 O -0.949 6.949 10 O -0.950 6.950 11 N -1.114 6.114 12 C 0.120 3.880 13 C -0.114 4.114 14 H 0.113 0.887 15 C -0.142 4.142 16 C 0.109 3.891 17 H 0.127 0.873 18 N -0.450 5.450 19 C -0.056 4.056 20 C -0.029 4.029 21 N -0.492 5.492 22 C 0.180 3.820 23 C -0.142 4.142 24 C -0.050 4.050 25 C -0.115 4.115 26 S 0.164 5.836 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.372 0.628 32 H -0.241 1.241 33 H -0.242 1.242 34 H 0.422 0.578 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.198 0.802 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 -1.667 -1.295 2.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.286 4.286 3 C -0.092 4.092 4 C -0.189 4.189 5 O -0.333 6.333 6 Si 0.594 3.406 7 C -0.787 4.787 8 S 2.793 3.207 9 O -0.940 6.940 10 O -0.939 6.939 11 N -0.875 5.875 12 C -0.006 4.006 13 C -0.134 4.134 14 H 0.131 0.869 15 C -0.180 4.180 16 C 0.006 3.994 17 H 0.145 0.855 18 N -0.132 5.132 19 C -0.188 4.188 20 C -0.177 4.177 21 N -0.210 5.210 22 C -0.102 4.102 23 C -0.181 4.181 24 C -0.171 4.171 25 C -0.173 4.173 26 S 0.431 5.569 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.220 0.780 32 H -0.165 1.165 33 H -0.166 1.166 34 H 0.257 0.743 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.191 0.809 40 H 0.187 0.813 41 H 0.215 0.785 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.100 0.900 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.183 -2.936 -1.567 3.333 hybrid contribution 2.511 1.839 0.347 3.132 sum 2.693 -1.097 -1.220 3.154 Atomic orbital electron populations 1.20438 0.86967 1.03612 1.03515 1.24424 1.00450 0.94842 1.08889 1.18612 0.90146 0.97293 1.03134 1.25609 1.07578 0.91123 0.94606 1.86646 1.37238 1.92997 1.16377 0.92917 0.85704 0.87315 0.74648 1.29466 1.11896 1.13311 1.24041 1.01606 0.73196 0.73524 0.72385 1.93607 1.42571 1.78286 1.79486 1.93565 1.78099 1.50337 1.71949 1.55496 1.21805 1.76889 1.33283 1.21508 0.88497 0.97140 0.93469 1.22614 1.00434 0.97788 0.92565 0.86856 1.23575 1.03529 0.96820 0.94051 1.23040 0.91705 0.98694 0.85981 0.85494 1.45578 1.25819 1.30382 1.11470 1.22799 1.04906 1.05213 0.85918 1.22373 0.97187 0.97725 1.00410 1.70336 1.27456 1.22433 1.00754 1.24815 0.89764 0.96016 0.99653 1.23521 0.99477 1.01818 0.93273 1.24591 1.00842 0.95026 0.96667 1.20980 0.88319 1.02634 1.05417 1.84460 0.95032 1.08385 1.69069 0.89756 0.88238 0.89200 0.89346 0.78035 1.16526 1.16622 0.74302 0.91168 0.89687 0.89406 0.88590 0.80881 0.81265 0.78542 0.88743 0.89216 0.88275 0.90003 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.23 8.43 36.01 0.30 0.53 16 2 C -0.17 0.06 6.11 -36.00 -0.22 -0.16 16 3 C -0.08 -0.06 4.67 -106.25 -0.50 -0.55 16 4 C -0.08 -0.09 2.02 36.01 0.07 -0.02 16 5 O -0.53 -1.07 12.63 -35.23 -0.45 -1.51 16 6 Si 0.70 -0.03 27.47 -169.99 -4.67 -4.70 16 7 C -0.69 -0.43 5.86 -41.21 -0.24 -0.67 16 8 S 2.70 2.01 5.33 -107.50 -0.57 1.44 16 9 O -0.95 -2.41 14.73 -57.17 -0.84 -3.25 16 10 O -0.95 -2.99 14.53 -57.17 -0.83 -3.82 16 11 N -1.11 2.75 6.00 -10.61 -0.06 2.69 16 12 C 0.12 -0.32 5.30 -4.04 -0.02 -0.34 16 13 C -0.11 0.49 3.78 -89.81 -0.34 0.15 16 14 H 0.11 -0.61 8.14 -51.93 -0.42 -1.04 16 15 C -0.14 0.60 7.18 -25.92 -0.19 0.42 16 16 C 0.11 -0.36 4.64 -67.12 -0.31 -0.67 16 17 H 0.13 -0.60 8.14 -51.93 -0.42 -1.03 16 18 N -0.45 0.13 2.94 -110.59 -0.33 -0.20 16 19 C -0.06 -0.02 11.58 -16.56 -0.19 -0.21 16 20 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 21 N -0.49 -2.14 11.25 -14.66 -0.16 -2.31 16 22 C 0.18 0.26 11.37 -90.37 -1.03 -0.77 16 23 C -0.14 0.50 7.32 -25.92 -0.19 0.31 16 24 C -0.05 0.00 6.50 -36.00 -0.23 -0.23 16 25 C -0.12 0.14 9.14 36.01 0.33 0.47 16 26 S 0.16 -0.14 23.31 -107.50 -2.51 -2.65 16 27 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 28 H 0.10 -0.26 7.98 -51.93 -0.41 -0.67 16 29 H 0.09 -0.36 4.73 -51.93 -0.25 -0.61 16 30 H 0.09 0.12 2.79 -51.93 -0.14 -0.03 16 31 H 0.37 0.26 9.11 45.56 0.42 0.67 16 32 H -0.24 -0.64 7.11 56.52 0.40 -0.24 16 33 H -0.24 0.11 6.86 56.52 0.39 0.50 16 34 H 0.42 -1.96 8.65 -34.47 -0.30 -2.25 16 35 H 0.07 -0.21 7.03 -51.93 -0.36 -0.58 16 36 H 0.09 -0.17 6.42 -51.93 -0.33 -0.50 16 37 H 0.09 -0.43 8.14 -51.93 -0.42 -0.86 16 38 H 0.10 -0.37 6.68 -51.93 -0.35 -0.71 16 39 H 0.17 -0.43 8.06 -52.49 -0.42 -0.85 16 40 H 0.17 0.10 8.06 -52.49 -0.42 -0.32 16 41 H 0.20 -0.22 7.44 -52.49 -0.39 -0.61 16 42 H 0.09 -0.24 7.86 -51.93 -0.41 -0.65 16 43 H 0.09 -0.35 8.14 -51.93 -0.42 -0.78 16 44 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 45 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 46 H 0.10 -0.13 6.01 -51.93 -0.31 -0.44 16 LS Contribution 385.76 15.07 5.81 5.81 Total: 0.00 -10.06 385.76 -13.43 -23.50 By element: Atomic # 1 Polarization: -7.11 SS G_CDS: -5.86 Total: -12.97 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.97 Total: -2.03 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -0.55 Total: 0.18 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -2.12 Total: -8.59 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: -4.67 Total: -4.70 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -3.08 Total: -1.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -10.06 -13.43 -23.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567572_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.369 kcal (2) G-P(sol) polarization free energy of solvation -10.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds