Wall clock time and date at job start Mon Mar 8 2021 10:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33391 * 125.20406 * 2 1 4 4 C 1.50708 * 122.53664 * 359.96771 * 3 2 1 5 5 O 1.42905 * 109.46977 * 73.69765 * 4 3 2 6 6 Si 1.86299 * 109.47300 * 313.69670 * 4 3 2 7 7 C 1.38415 * 114.92335 * 180.20686 * 3 2 1 8 8 S 1.76204 * 122.54199 * 179.75950 * 7 3 2 9 9 O 1.42093 * 106.40687 * 161.82642 * 8 7 3 10 10 O 1.42109 * 106.40233 * 28.90235 * 8 7 3 11 11 N 1.65598 * 107.21846 * 275.36841 * 8 7 3 12 12 C 1.46499 * 120.00315 * 65.26829 * 11 8 7 13 13 C 1.53007 * 109.47234 * 164.72812 * 12 11 8 14 14 H 1.09003 * 112.84700 * 316.19620 * 13 12 11 15 15 C 1.53772 * 113.61418 * 87.50322 * 13 12 11 16 16 C 1.53783 * 87.08109 * 139.97916 * 15 13 12 17 17 H 1.09007 * 113.68741 * 89.12340 * 16 15 13 18 18 N 1.46496 * 113.62015 * 220.01821 * 16 15 13 19 19 C 1.36881 * 126.40047 * 217.21753 * 18 16 15 20 20 C 1.34673 * 106.81699 * 179.84128 * 19 18 16 21 21 N 1.34122 * 108.02097 * 0.41465 * 20 19 18 22 22 C 1.30503 * 109.25853 * 359.73866 * 21 20 19 23 23 C 1.53771 * 87.08175 * 334.57001 * 16 15 13 24 24 C 1.33388 * 114.92439 * 359.49019 * 7 3 2 25 25 C 1.50699 * 125.20620 * 180.29030 * 24 7 3 26 26 S 1.75883 * 109.58943 * 0.27093 * 24 7 3 27 27 H 1.09002 * 109.46909 * 184.29089 * 1 2 3 28 28 H 1.09004 * 109.46963 * 304.28443 * 1 2 3 29 29 H 1.08997 * 109.47302 * 64.29099 * 1 2 3 30 30 H 1.08995 * 109.47106 * 193.69407 * 4 3 2 31 31 H 0.96695 * 114.00229 * 65.64888 * 5 4 3 32 32 H 1.48500 * 110.00169 * 175.04445 * 6 4 3 33 33 H 1.48501 * 109.99601 * 296.36324 * 6 4 3 34 34 H 0.97005 * 120.00011 * 244.99621 * 11 8 7 35 35 H 1.09002 * 109.47436 * 284.73074 * 12 11 8 36 36 H 1.09006 * 109.46873 * 44.73231 * 12 11 8 37 37 H 1.08999 * 113.61879 * 254.53116 * 15 13 12 38 38 H 1.09004 * 113.61738 * 25.43463 * 15 13 12 39 39 H 1.08000 * 126.58947 * 359.97250 * 19 18 16 40 40 H 1.08000 * 125.98533 * 180.11438 * 20 19 18 41 41 H 1.07995 * 125.65271 * 180.02562 * 22 21 20 42 42 H 1.09006 * 113.61879 * 270.87898 * 23 16 15 43 43 H 1.09001 * 113.62252 * 139.97923 * 23 16 15 44 44 H 1.08992 * 109.46911 * 90.00290 * 25 24 7 45 45 H 1.09007 * 109.46998 * 210.00665 * 25 24 7 46 46 H 1.08997 * 109.47064 * 329.99948 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7051 2.4847 -0.0007 5 8 1.1741 2.7827 1.2921 6 14 0.3474 2.5994 -1.2713 7 6 3.6379 0.8429 -0.0045 8 16 4.8356 2.1353 -0.0116 9 8 6.0599 1.5503 0.4102 10 8 4.2354 3.2422 0.6472 11 7 5.0544 2.5922 -1.5882 12 6 3.9542 3.2122 -2.3307 13 6 4.5024 3.8745 -3.5964 14 1 5.4197 4.4353 -3.4172 15 6 4.5846 2.9243 -4.8026 16 6 4.0959 4.1013 -5.6633 17 1 4.9018 4.7243 -6.0513 18 7 3.1300 3.7133 -6.6941 19 6 3.0426 4.2270 -7.9599 20 6 2.0247 3.5899 -8.5695 21 7 1.4989 2.7177 -7.6967 22 6 2.1559 2.7861 -6.5712 23 6 3.4442 4.6610 -4.3879 24 6 3.9752 -0.4476 0.0026 25 6 5.3861 -0.9769 0.0059 26 16 2.5211 -1.4371 0.0079 27 1 -0.3633 -1.0248 0.0769 28 1 -0.3633 0.5789 0.8491 29 1 -0.3634 0.4458 -0.9259 30 1 2.4916 3.1991 -0.2439 31 1 1.8411 2.8267 1.9907 32 1 -0.3037 3.9321 -1.1999 33 1 0.9037 2.3781 -2.6303 34 1 5.9124 2.4529 -2.0189 35 1 3.2262 2.4491 -2.6061 36 1 3.4730 3.9649 -1.7060 37 1 5.5995 2.6034 -5.0374 38 1 3.8781 2.0956 -4.7547 39 1 3.6707 4.9941 -8.3881 40 1 1.6875 3.7560 -9.5820 41 1 1.9543 2.1982 -5.6879 42 1 2.4259 4.3072 -4.2264 43 1 3.5384 5.7423 -4.2877 44 1 5.7259 -1.0989 1.0343 45 1 5.4140 -1.9405 -0.5029 46 1 6.0391 -0.2740 -0.5115 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567572_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:40 Heat of formation + Delta-G solvation = 27.056482 kcal Electronic energy + Delta-G solvation = -32592.774760 eV Core-core repulsion = 28319.234787 eV Total energy + Delta-G solvation = -4273.539973 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.101 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.12234 -40.38551 -40.15170 -38.72832 -37.17435 -37.02862 -36.17025 -34.31026 -33.37854 -30.81664 -30.37147 -28.54219 -27.99350 -26.90671 -25.92030 -24.53956 -23.27275 -22.51990 -21.92371 -20.93978 -20.32903 -19.98476 -19.20017 -18.60585 -18.47738 -18.19055 -17.39355 -17.05962 -16.59252 -16.29925 -16.16397 -15.78288 -15.48245 -15.45318 -15.11585 -14.94698 -14.80299 -14.77411 -14.52333 -14.31955 -14.18849 -14.13208 -13.84940 -13.66645 -13.53245 -13.46916 -13.43747 -13.39823 -13.11173 -12.91792 -12.74225 -12.49322 -12.30332 -12.10713 -11.77127 -11.72976 -11.64973 -11.27519 -11.08573 -10.98192 -10.70843 -10.51339 -10.00581 -9.53680 -9.48782 -4.88225 -0.88708 -0.45054 0.38626 0.67487 0.82265 1.07512 1.26380 1.49315 1.82379 1.90147 1.93249 2.18275 2.51281 3.08368 3.19801 3.26135 3.46718 3.55185 3.56546 3.70188 3.78251 3.81057 3.88407 3.97734 4.01374 4.10015 4.14007 4.22085 4.31547 4.38059 4.49436 4.53801 4.55757 4.57504 4.60179 4.64355 4.68605 4.71923 4.77456 4.86902 4.90861 4.92152 5.07019 5.09580 5.16144 5.26627 5.39382 5.80676 5.92192 6.25360 6.53139 7.11219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.171 4.171 3 C -0.096 4.096 4 C -0.091 4.091 5 O -0.539 6.539 6 Si 0.743 3.257 7 C -0.695 4.695 8 S 2.713 3.287 9 O -0.971 6.971 10 O -0.979 6.979 11 N -1.101 6.101 12 C 0.112 3.888 13 C -0.103 4.103 14 H 0.130 0.870 15 C -0.138 4.138 16 C 0.105 3.895 17 H 0.148 0.852 18 N -0.445 5.445 19 C -0.048 4.048 20 C -0.064 4.064 21 N -0.539 5.539 22 C 0.172 3.828 23 C -0.144 4.144 24 C -0.059 4.059 25 C -0.120 4.120 26 S 0.187 5.813 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.374 0.626 32 H -0.284 1.284 33 H -0.233 1.233 34 H 0.433 0.567 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.202 0.798 40 H 0.175 0.825 41 H 0.215 0.785 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 -2.232 -1.793 3.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.289 4.289 3 C -0.106 4.106 4 C -0.201 4.201 5 O -0.345 6.345 6 Si 0.641 3.359 7 C -0.796 4.796 8 S 2.803 3.197 9 O -0.961 6.961 10 O -0.969 6.969 11 N -0.864 5.864 12 C -0.014 4.014 13 C -0.123 4.123 14 H 0.148 0.852 15 C -0.176 4.176 16 C 0.003 3.997 17 H 0.166 0.834 18 N -0.127 5.127 19 C -0.181 4.181 20 C -0.210 4.210 21 N -0.258 5.258 22 C -0.111 4.111 23 C -0.184 4.184 24 C -0.180 4.180 25 C -0.179 4.179 26 S 0.454 5.546 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.222 0.778 32 H -0.211 1.211 33 H -0.157 1.157 34 H 0.271 0.729 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.219 0.781 40 H 0.192 0.808 41 H 0.231 0.769 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.054 -3.509 -2.049 4.198 hybrid contribution 2.237 2.033 0.533 3.069 sum 3.291 -1.476 -1.517 3.913 Atomic orbital electron populations 1.20616 0.85582 1.04863 1.04145 1.24758 1.01594 0.94838 1.07724 1.18577 0.90352 0.97197 1.04490 1.25818 1.08174 0.91635 0.94446 1.86613 1.37772 1.93162 1.16954 0.92444 0.83991 0.85131 0.74309 1.29385 1.11814 1.13463 1.24912 1.01077 0.72611 0.73104 0.72911 1.93574 1.43557 1.78577 1.80425 1.93530 1.78520 1.51590 1.73253 1.55187 1.22531 1.76539 1.32185 1.21643 0.88573 0.97223 0.93986 1.22581 1.00666 0.97606 0.91479 0.85216 1.23573 1.04139 0.96404 0.93452 1.23361 0.91539 0.99511 0.85314 0.83440 1.45759 1.25656 1.29534 1.11786 1.23225 1.04159 1.04821 0.85892 1.22669 0.98604 0.98711 1.01056 1.70261 1.29268 1.24056 1.02225 1.25111 0.89947 0.96498 0.99526 1.23530 0.99111 1.02298 0.93414 1.24799 1.01756 0.95057 0.96407 1.21077 0.87667 1.03600 1.05534 1.84353 0.94205 1.07624 1.68446 0.87975 0.88283 0.87730 0.89816 0.77751 1.21106 1.15674 0.72907 0.90816 0.90593 0.88084 0.88986 0.78083 0.80769 0.76897 0.89914 0.88605 0.88520 0.88089 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.57 8.43 71.24 0.60 1.17 16 2 C -0.17 0.19 6.11 24.59 0.15 0.34 16 3 C -0.10 -0.16 4.67 -20.92 -0.10 -0.26 16 4 C -0.09 -0.30 2.02 71.24 0.14 -0.16 16 5 O -0.54 -2.92 12.63 -148.98 -1.88 -4.80 16 6 Si 0.74 0.37 27.47 68.60 1.88 2.26 16 7 C -0.70 -1.14 5.86 21.21 0.12 -1.01 16 8 S 2.71 6.09 5.33 -56.49 -0.30 5.79 16 9 O -0.97 -5.64 14.73 -128.00 -1.89 -7.52 16 10 O -0.98 -7.57 14.53 -128.00 -1.86 -9.43 16 11 N -1.10 5.55 6.00 -187.47 -1.12 4.43 16 12 C 0.11 -0.62 5.30 86.38 0.46 -0.16 16 13 C -0.10 1.01 3.78 -10.27 -0.04 0.98 16 14 H 0.13 -1.66 8.14 -2.39 -0.02 -1.68 16 15 C -0.14 1.38 7.18 31.12 0.22 1.60 16 16 C 0.11 -0.85 4.64 45.52 0.21 -0.64 16 17 H 0.15 -1.78 8.14 -2.38 -0.02 -1.80 16 18 N -0.45 0.54 2.94 -503.81 -1.48 -0.94 16 19 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 20 C -0.06 -0.37 11.87 83.53 0.99 0.63 16 21 N -0.54 -5.28 11.25 -200.31 -2.25 -7.53 16 22 C 0.17 0.54 11.37 180.26 2.05 2.59 16 23 C -0.14 1.13 7.32 31.12 0.23 1.36 16 24 C -0.06 0.01 6.50 24.59 0.16 0.17 16 25 C -0.12 0.33 9.14 71.24 0.65 0.98 16 26 S 0.19 -0.45 23.31 -56.49 -1.32 -1.77 16 27 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.10 -0.54 7.98 -2.39 -0.02 -0.56 16 29 H 0.11 -0.93 4.73 -2.39 -0.01 -0.94 16 30 H 0.08 0.34 2.79 -2.39 -0.01 0.33 16 31 H 0.37 1.21 9.11 -74.06 -0.68 0.53 16 32 H -0.28 -2.12 7.11 99.48 0.71 -1.41 16 33 H -0.23 0.29 6.86 99.48 0.68 0.98 16 34 H 0.43 -4.30 8.65 -96.74 -0.84 -5.14 16 35 H 0.07 -0.46 7.03 -2.39 -0.02 -0.47 16 36 H 0.08 -0.25 6.42 -2.38 -0.02 -0.27 16 37 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 38 H 0.09 -0.80 6.68 -2.39 -0.02 -0.82 16 39 H 0.20 -1.34 8.06 -2.91 -0.02 -1.36 16 40 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.21 -0.45 7.44 -2.91 -0.02 -0.47 16 42 H 0.08 -0.42 7.86 -2.38 -0.02 -0.44 16 43 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.10 -0.71 8.14 -2.38 -0.02 -0.73 16 46 H 0.10 -0.26 6.01 -2.39 -0.01 -0.27 16 Total: 0.00 -24.55 385.76 -3.85 -28.40 By element: Atomic # 1 Polarization: -16.98 SS G_CDS: -0.45 Total: -17.43 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.82 Total: 8.54 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -4.86 Total: -4.04 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -5.63 Total: -21.75 kcal Atomic # 14 Polarization: 0.37 SS G_CDS: 1.88 Total: 2.26 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.62 Total: 4.02 kcal Total: -24.55 -3.85 -28.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567572_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.454 kcal (2) G-P(sol) polarization free energy of solvation -24.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds