Wall clock time and date at job start Mon Mar 8 2021 10:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34778 * 1 3 3 O 1.21594 * 120.00120 * 2 1 4 4 N 1.34778 * 120.00150 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99969 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47141 * 324.99475 * 5 4 2 7 7 C 1.53004 * 109.47439 * 84.99849 * 5 4 2 8 8 C 1.52996 * 109.47310 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46774 * 299.99852 * 8 7 5 10 10 H 1.08992 * 109.47717 * 299.99910 * 9 8 7 11 11 N 1.46509 * 109.46898 * 179.97438 * 9 8 7 12 12 S 1.65601 * 119.99528 * 97.39809 * 11 9 8 13 13 O 1.42099 * 106.40212 * 180.43424 * 12 11 9 14 14 O 1.42098 * 106.40279 * 313.35777 * 12 11 9 15 15 C 1.76206 * 107.21499 * 66.89671 * 12 11 9 16 16 C 1.33391 * 122.53434 * 165.58625 * 15 12 11 17 17 C 1.50699 * 125.20686 * 0.02774 * 16 15 12 18 18 O 1.42903 * 109.47222 * 39.65053 * 17 16 15 19 19 Si 1.86292 * 109.47273 * 159.65246 * 17 16 15 20 20 S 1.75882 * 109.58976 * 179.90497 * 16 15 12 21 21 C 1.75887 * 90.97180 * 0.30000 * 20 16 15 22 22 C 1.33388 * 109.59380 * 359.83175 * 21 20 16 23 23 C 1.52999 * 109.47129 * 60.00541 * 9 8 7 24 24 C 1.52996 * 109.46933 * 204.99800 * 5 4 2 25 25 H 0.96996 * 119.99462 * 179.97438 * 1 2 3 26 26 H 0.96995 * 119.99560 * 359.72276 * 1 2 3 27 27 H 0.96998 * 119.99825 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.46441 * 300.00186 * 7 5 4 29 29 H 1.09001 * 109.46520 * 59.99779 * 7 5 4 30 30 H 1.08994 * 109.47362 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47180 * 59.99682 * 8 7 5 32 32 H 0.96997 * 120.00461 * 277.40457 * 11 9 8 33 33 H 1.08999 * 109.46723 * 279.64893 * 17 16 15 34 34 H 0.96694 * 113.99769 * 184.95983 * 18 17 16 35 35 H 1.48507 * 110.00073 * 299.99945 * 19 17 16 36 36 H 1.48505 * 110.00244 * 61.31408 * 19 17 16 37 37 H 1.08003 * 125.20651 * 179.86514 * 21 20 16 38 38 H 1.07996 * 122.54058 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.47220 * 180.02562 * 23 9 8 40 40 H 1.09000 * 109.47670 * 59.99652 * 23 9 8 41 41 H 1.09006 * 109.47629 * 299.99748 * 24 5 4 42 42 H 1.09007 * 109.47424 * 60.00010 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9558 1.0530 0.0000 4 7 2.0217 -1.1672 -0.0005 5 6 3.4867 -1.1671 0.0000 6 1 3.8503 -0.3250 -0.5888 7 6 3.9962 -1.0423 1.4373 8 6 5.5262 -1.0429 1.4380 9 6 6.0359 -2.3502 0.8279 10 1 5.6720 -3.1922 1.4167 11 7 7.5009 -2.3506 0.8279 12 16 8.3286 -3.1196 2.0386 13 8 9.7098 -2.9322 1.7623 14 8 7.7188 -2.7199 3.2583 15 6 8.0170 -4.8456 1.8687 16 6 8.7427 -5.7710 2.4982 17 6 9.9007 -5.4881 3.4202 18 8 9.5986 -4.3491 4.2287 19 14 10.1980 -6.9656 4.5151 20 16 8.1391 -7.3718 2.0903 21 6 6.9043 -6.6739 1.0502 22 6 7.0043 -5.3439 1.0674 23 6 5.5265 -2.4750 -0.6094 24 6 3.9969 -2.4741 -0.6102 25 1 -0.4849 -0.8401 -0.0004 26 1 -0.4849 0.8400 0.0041 27 1 1.5367 -2.0072 -0.0005 28 1 3.6327 -0.1112 1.8720 29 1 3.6327 -1.8846 2.0260 30 1 5.8892 -0.9545 2.4619 31 1 5.8901 -0.2010 0.8490 32 1 7.9861 -1.9003 0.1189 33 1 10.7946 -5.2877 2.8297 34 1 10.3294 -4.0628 4.7934 35 1 8.9864 -7.2493 5.3256 36 1 10.5443 -8.1494 3.6880 37 1 6.1760 -7.2362 0.4845 38 1 6.3453 -4.7044 0.4989 39 1 5.8892 -3.4066 -1.0439 40 1 5.8904 -1.6331 -1.1983 41 1 3.6334 -3.3164 -0.0214 42 1 3.6340 -2.5630 -1.6342 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567574_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:59 Heat of formation + Delta-G solvation = -97.870345 kcal Electronic energy + Delta-G solvation = -29409.709301 eV Core-core repulsion = 25224.059802 eV Total energy + Delta-G solvation = -4185.649499 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.085 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.15687 -39.75266 -39.48004 -37.88953 -37.67620 -36.52618 -36.19311 -34.70506 -33.24757 -32.04373 -31.89428 -28.83393 -27.55232 -24.48313 -23.94415 -23.60571 -21.85598 -21.71231 -21.39340 -20.15509 -19.16431 -18.94136 -18.54798 -18.39086 -17.97369 -17.60225 -17.45192 -16.44546 -16.21911 -16.08370 -15.83639 -15.59286 -15.31232 -15.21989 -15.08131 -14.81516 -14.45374 -14.30033 -14.14431 -13.94797 -13.76969 -13.38109 -13.26452 -12.96220 -12.82291 -12.74129 -12.66451 -12.47129 -12.36207 -12.19260 -12.11967 -11.81488 -11.63080 -11.53615 -11.19607 -10.86454 -10.64437 -10.53267 -10.11592 -9.98077 -9.81889 -5.32592 -0.56425 -0.52493 0.28689 0.61681 0.96534 1.12700 1.44827 1.77299 1.88250 2.08003 2.28940 2.85819 3.00737 3.41458 3.46871 3.48776 3.54403 3.67390 3.84355 3.91778 3.94337 4.06929 4.07366 4.14025 4.22106 4.31866 4.36540 4.42567 4.52749 4.61925 4.71289 4.75100 4.85790 4.97547 5.02021 5.04985 5.22349 5.26245 5.35585 5.54107 5.74878 5.92565 5.97386 6.37688 6.98286 7.69031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.705 3.295 3 O -0.592 6.592 4 N -0.743 5.743 5 C 0.160 3.840 6 H 0.093 0.907 7 C -0.130 4.130 8 C -0.134 4.134 9 C 0.146 3.854 10 H 0.088 0.912 11 N -1.118 6.118 12 S 2.721 3.279 13 O -0.954 6.954 14 O -0.931 6.931 15 C -0.659 4.659 16 C -0.054 4.054 17 C -0.080 4.080 18 O -0.544 6.544 19 Si 0.695 3.305 20 S 0.141 5.859 21 C -0.207 4.207 22 C -0.091 4.091 23 C -0.126 4.126 24 C -0.126 4.126 25 H 0.397 0.603 26 H 0.416 0.584 27 H 0.396 0.604 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.420 0.580 33 H 0.109 0.891 34 H 0.400 0.600 35 H -0.235 1.235 36 H -0.235 1.235 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -5.575 -1.842 6.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.403 3.597 3 O -0.469 6.469 4 N -0.398 5.398 5 C 0.055 3.945 6 H 0.111 0.889 7 C -0.169 4.169 8 C -0.174 4.174 9 C 0.039 3.961 10 H 0.106 0.894 11 N -0.877 5.877 12 S 2.805 3.195 13 O -0.944 6.944 14 O -0.920 6.920 15 C -0.756 4.756 16 C -0.175 4.175 17 C -0.191 4.191 18 O -0.353 6.353 19 Si 0.592 3.408 20 S 0.404 5.596 21 C -0.343 4.343 22 C -0.120 4.120 23 C -0.166 4.166 24 C -0.165 4.165 25 H 0.224 0.776 26 H 0.248 0.752 27 H 0.229 0.771 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.255 0.745 33 H 0.126 0.874 34 H 0.251 0.749 35 H -0.158 1.158 36 H -0.158 1.158 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.050 -6.885 -0.778 7.008 hybrid contribution -1.483 0.673 -1.618 2.296 sum -2.533 -6.212 -2.396 7.124 Atomic orbital electron populations 1.43028 1.05466 1.12661 1.82510 1.16000 0.82071 0.84314 0.77342 1.90998 1.67765 1.30388 1.57765 1.45170 1.07188 1.07108 1.80344 1.20917 0.77907 0.98856 0.96869 0.88921 1.21940 0.95014 1.03380 0.96588 1.22020 0.95155 0.97256 1.02978 1.20991 0.78258 0.99320 0.97492 0.89378 1.55802 1.15400 1.70032 1.46512 1.01494 0.72849 0.72370 0.72774 1.93564 1.30815 1.85142 1.84877 1.93605 1.77415 1.79843 1.41180 1.29955 1.07423 1.27863 1.10362 1.23607 0.98879 0.96499 0.98474 1.24624 0.95891 1.00952 0.97640 1.86401 1.43914 1.46313 1.58684 0.94305 0.87418 0.74826 0.84279 1.84479 1.26752 1.06274 1.42136 1.25899 1.04187 0.98084 1.06109 1.19874 0.97596 0.95236 0.99249 1.21867 0.94996 1.03796 0.95905 1.21792 0.95374 0.97249 1.02082 0.77584 0.75225 0.77054 0.90508 0.91447 0.89760 0.90619 0.74524 0.87367 0.74870 1.15821 1.15847 0.80591 0.82747 0.90396 0.90065 0.90936 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 1.73 8.88 27.64 0.25 1.98 16 2 C 0.70 1.20 8.80 -86.92 -0.77 0.44 16 3 O -0.59 -3.97 16.84 5.28 0.09 -3.88 16 4 N -0.74 1.00 5.08 -58.67 -0.30 0.71 16 5 C 0.16 -0.15 2.46 -67.93 -0.17 -0.32 16 6 H 0.09 0.10 7.58 -51.93 -0.39 -0.29 16 7 C -0.13 0.00 5.49 -26.73 -0.15 -0.15 16 8 C -0.13 -0.02 5.53 -26.73 -0.15 -0.16 16 9 C 0.15 -0.19 1.52 -67.92 -0.10 -0.29 16 10 H 0.09 -0.14 6.36 -51.93 -0.33 -0.47 16 11 N -1.12 0.45 5.21 -4.89 -0.03 0.42 16 12 S 2.72 8.74 4.13 -107.50 -0.44 8.30 16 13 O -0.95 -5.02 17.10 -61.90 -1.06 -6.08 16 14 O -0.93 -5.64 16.39 -64.94 -1.06 -6.71 16 15 C -0.66 -1.81 5.72 -41.21 -0.24 -2.04 16 16 C -0.05 -0.16 5.78 -36.00 -0.21 -0.37 16 17 C -0.08 -0.08 2.34 36.00 0.08 0.00 16 18 O -0.54 -0.94 9.56 -59.58 -0.57 -1.51 16 19 Si 0.69 -0.69 31.25 -169.99 -5.31 -6.00 16 20 S 0.14 0.20 20.85 -107.50 -2.24 -2.05 16 21 C -0.21 0.02 11.23 29.04 0.33 0.35 16 22 C -0.09 -0.04 9.04 -41.21 -0.37 -0.41 16 23 C -0.13 0.42 5.21 -26.76 -0.14 0.28 16 24 C -0.13 0.45 5.39 -26.76 -0.14 0.30 16 25 H 0.40 -2.04 8.84 -40.82 -0.36 -2.40 16 26 H 0.42 -0.94 8.93 -40.82 -0.36 -1.30 16 27 H 0.40 -1.70 8.62 -40.82 -0.35 -2.06 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 30 H 0.08 0.15 7.91 -51.93 -0.41 -0.26 16 31 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.42 -0.98 8.86 -34.47 -0.31 -1.29 16 33 H 0.11 -0.06 7.96 -51.93 -0.41 -0.47 16 34 H 0.40 -1.44 8.86 45.56 0.40 -1.03 16 35 H -0.24 -0.46 7.11 56.52 0.40 -0.06 16 36 H -0.23 -0.05 7.11 56.52 0.40 0.35 16 37 H 0.18 -0.54 8.06 -52.48 -0.42 -0.96 16 38 H 0.16 -0.37 4.45 -52.49 -0.23 -0.60 16 39 H 0.08 -0.35 7.21 -51.93 -0.37 -0.72 16 40 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.07 -0.33 8.14 -51.93 -0.42 -0.76 16 42 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 LS Contribution 360.49 15.07 5.43 5.43 Total: 0.00 -14.11 360.49 -12.56 -26.67 By element: Atomic # 1 Polarization: -9.63 SS G_CDS: -5.29 Total: -14.92 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.02 Total: -2.37 kcal Atomic # 7 Polarization: 3.19 SS G_CDS: -0.08 Total: 3.11 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -2.60 Total: -18.17 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: -5.31 Total: -6.00 kcal Atomic # 16 Polarization: 8.94 SS G_CDS: -2.68 Total: 6.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -14.11 -12.56 -26.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567574_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.202 kcal (2) G-P(sol) polarization free energy of solvation -14.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds