Wall clock time and date at job start Mon Mar 8 2021 10:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34778 * 1 3 3 O 1.21594 * 120.00120 * 2 1 4 4 N 1.34778 * 120.00150 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99969 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47141 * 324.99475 * 5 4 2 7 7 C 1.53004 * 109.47439 * 84.99849 * 5 4 2 8 8 C 1.52996 * 109.47310 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46774 * 299.99852 * 8 7 5 10 10 H 1.08992 * 109.47717 * 299.99910 * 9 8 7 11 11 N 1.46509 * 109.46898 * 179.97438 * 9 8 7 12 12 S 1.65601 * 119.99528 * 97.39809 * 11 9 8 13 13 O 1.42099 * 106.40212 * 180.43424 * 12 11 9 14 14 O 1.42098 * 106.40279 * 313.35777 * 12 11 9 15 15 C 1.76206 * 107.21499 * 66.89671 * 12 11 9 16 16 C 1.33391 * 122.53434 * 165.58625 * 15 12 11 17 17 C 1.50699 * 125.20686 * 0.02774 * 16 15 12 18 18 O 1.42903 * 109.47222 * 39.65053 * 17 16 15 19 19 Si 1.86292 * 109.47273 * 159.65246 * 17 16 15 20 20 S 1.75882 * 109.58976 * 179.90497 * 16 15 12 21 21 C 1.75887 * 90.97180 * 0.30000 * 20 16 15 22 22 C 1.33388 * 109.59380 * 359.83175 * 21 20 16 23 23 C 1.52999 * 109.47129 * 60.00541 * 9 8 7 24 24 C 1.52996 * 109.46933 * 204.99800 * 5 4 2 25 25 H 0.96996 * 119.99462 * 179.97438 * 1 2 3 26 26 H 0.96995 * 119.99560 * 359.72276 * 1 2 3 27 27 H 0.96998 * 119.99825 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.46441 * 300.00186 * 7 5 4 29 29 H 1.09001 * 109.46520 * 59.99779 * 7 5 4 30 30 H 1.08994 * 109.47362 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47180 * 59.99682 * 8 7 5 32 32 H 0.96997 * 120.00461 * 277.40457 * 11 9 8 33 33 H 1.08999 * 109.46723 * 279.64893 * 17 16 15 34 34 H 0.96694 * 113.99769 * 184.95983 * 18 17 16 35 35 H 1.48507 * 110.00073 * 299.99945 * 19 17 16 36 36 H 1.48505 * 110.00244 * 61.31408 * 19 17 16 37 37 H 1.08003 * 125.20651 * 179.86514 * 21 20 16 38 38 H 1.07996 * 122.54058 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.47220 * 180.02562 * 23 9 8 40 40 H 1.09000 * 109.47670 * 59.99652 * 23 9 8 41 41 H 1.09006 * 109.47629 * 299.99748 * 24 5 4 42 42 H 1.09007 * 109.47424 * 60.00010 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9558 1.0530 0.0000 4 7 2.0217 -1.1672 -0.0005 5 6 3.4867 -1.1671 0.0000 6 1 3.8503 -0.3250 -0.5888 7 6 3.9962 -1.0423 1.4373 8 6 5.5262 -1.0429 1.4380 9 6 6.0359 -2.3502 0.8279 10 1 5.6720 -3.1922 1.4167 11 7 7.5009 -2.3506 0.8279 12 16 8.3286 -3.1196 2.0386 13 8 9.7098 -2.9322 1.7623 14 8 7.7188 -2.7199 3.2583 15 6 8.0170 -4.8456 1.8687 16 6 8.7427 -5.7710 2.4982 17 6 9.9007 -5.4881 3.4202 18 8 9.5986 -4.3491 4.2287 19 14 10.1980 -6.9656 4.5151 20 16 8.1391 -7.3718 2.0903 21 6 6.9043 -6.6739 1.0502 22 6 7.0043 -5.3439 1.0674 23 6 5.5265 -2.4750 -0.6094 24 6 3.9969 -2.4741 -0.6102 25 1 -0.4849 -0.8401 -0.0004 26 1 -0.4849 0.8400 0.0041 27 1 1.5367 -2.0072 -0.0005 28 1 3.6327 -0.1112 1.8720 29 1 3.6327 -1.8846 2.0260 30 1 5.8892 -0.9545 2.4619 31 1 5.8901 -0.2010 0.8490 32 1 7.9861 -1.9003 0.1189 33 1 10.7946 -5.2877 2.8297 34 1 10.3294 -4.0628 4.7934 35 1 8.9864 -7.2493 5.3256 36 1 10.5443 -8.1494 3.6880 37 1 6.1760 -7.2362 0.4845 38 1 6.3453 -4.7044 0.4989 39 1 5.8892 -3.4066 -1.0439 40 1 5.8904 -1.6331 -1.1983 41 1 3.6334 -3.3164 -0.0214 42 1 3.6340 -2.5630 -1.6342 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567574_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:58 Heat of formation + Delta-G solvation = -108.851905 kcal Electronic energy + Delta-G solvation = -29410.185498 eV Core-core repulsion = 25224.059802 eV Total energy + Delta-G solvation = -4186.125695 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.085 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18250 -39.76500 -39.50778 -38.17966 -37.74080 -36.83646 -36.23016 -34.79319 -33.20982 -32.04204 -31.80764 -28.79148 -27.59775 -24.51802 -23.86352 -23.54745 -21.88656 -21.78278 -21.33359 -20.27011 -19.17330 -19.00215 -18.60129 -18.37641 -18.06337 -17.69700 -17.51026 -16.48393 -16.22510 -16.12413 -15.97137 -15.60657 -15.36081 -15.24921 -15.04655 -14.82666 -14.49338 -14.30524 -14.18797 -13.89343 -13.79561 -13.40524 -13.26423 -13.15164 -13.07205 -12.97306 -12.69805 -12.48924 -12.32512 -12.17730 -12.11914 -11.88410 -11.61139 -11.46877 -11.40252 -10.88716 -10.72527 -10.52556 -10.18883 -9.93783 -9.84299 -5.25663 -0.75174 -0.60504 0.21640 0.60246 0.98589 1.11521 1.48987 1.79067 1.90283 2.02781 2.18161 2.67130 3.02898 3.45466 3.52863 3.59692 3.64080 3.69527 3.91253 3.97790 4.06304 4.10410 4.15417 4.19863 4.24659 4.40530 4.47327 4.50125 4.57155 4.73332 4.75862 4.83347 5.03635 5.07373 5.11807 5.17375 5.19619 5.33343 5.41007 5.58950 5.91546 6.01500 6.04476 6.58504 7.12592 7.67359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.695 3.305 3 O -0.649 6.649 4 N -0.728 5.728 5 C 0.160 3.840 6 H 0.069 0.931 7 C -0.124 4.124 8 C -0.136 4.136 9 C 0.144 3.856 10 H 0.095 0.905 11 N -1.106 6.106 12 S 2.731 3.269 13 O -0.982 6.982 14 O -0.968 6.968 15 C -0.670 4.670 16 C -0.084 4.084 17 C -0.101 4.101 18 O -0.567 6.567 19 Si 0.782 3.218 20 S 0.126 5.874 21 C -0.197 4.197 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.414 0.586 26 H 0.418 0.582 27 H 0.414 0.586 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.430 0.570 33 H 0.119 0.881 34 H 0.417 0.583 35 H -0.279 1.279 36 H -0.248 1.248 37 H 0.210 0.790 38 H 0.183 0.817 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 -7.471 -3.306 8.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.393 3.607 3 O -0.531 6.531 4 N -0.384 5.384 5 C 0.054 3.946 6 H 0.087 0.913 7 C -0.164 4.164 8 C -0.176 4.176 9 C 0.037 3.963 10 H 0.113 0.887 11 N -0.869 5.869 12 S 2.818 3.182 13 O -0.972 6.972 14 O -0.958 6.958 15 C -0.770 4.770 16 C -0.204 4.204 17 C -0.211 4.211 18 O -0.379 6.379 19 Si 0.681 3.319 20 S 0.389 5.611 21 C -0.332 4.332 22 C -0.128 4.128 23 C -0.163 4.163 24 C -0.156 4.156 25 H 0.245 0.755 26 H 0.250 0.750 27 H 0.251 0.749 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.267 0.733 33 H 0.137 0.863 34 H 0.272 0.728 35 H -0.205 1.205 36 H -0.173 1.173 37 H 0.227 0.773 38 H 0.200 0.800 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.011 -8.790 -2.252 9.294 hybrid contribution -1.270 1.278 -1.158 2.142 sum -3.281 -7.512 -3.410 8.878 Atomic orbital electron populations 1.42873 1.04302 1.13802 1.81136 1.16316 0.82954 0.84235 0.77183 1.90958 1.69142 1.32585 1.60402 1.45015 1.07119 1.07052 1.79228 1.20891 0.78066 0.99846 0.95768 0.91325 1.21862 0.94826 1.02202 0.97518 1.21996 0.95362 0.98406 1.01786 1.21133 0.77405 0.98469 0.99243 0.88669 1.55505 1.15814 1.69607 1.45959 1.00801 0.72190 0.72641 0.72570 1.93514 1.32654 1.85779 1.85252 1.93559 1.77868 1.80793 1.43541 1.29963 1.08598 1.27131 1.11296 1.24011 0.99844 0.97278 0.99251 1.25031 0.95847 1.01855 0.98338 1.86364 1.45482 1.46841 1.59252 0.93285 0.84955 0.72356 0.81340 1.84498 1.27734 1.05959 1.42901 1.26313 1.03698 0.97965 1.05202 1.20177 0.97473 0.95941 0.99255 1.21897 0.95126 1.05175 0.94061 1.21774 0.94968 0.95949 1.02949 0.75516 0.74996 0.74950 0.93510 0.90416 0.92038 0.90881 0.73324 0.86328 0.72843 1.20461 1.17284 0.77299 0.79998 0.88020 0.89881 0.88838 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.70 8.88 -184.74 -1.64 2.06 16 2 C 0.70 2.69 8.80 179.05 1.58 4.26 16 3 O -0.65 -9.95 16.84 -4.01 -0.07 -10.01 16 4 N -0.73 2.38 5.08 -457.80 -2.33 0.05 16 5 C 0.16 -0.33 2.46 44.99 0.11 -0.22 16 6 H 0.07 0.23 7.58 -2.39 -0.02 0.21 16 7 C -0.12 -0.13 5.49 30.59 0.17 0.04 16 8 C -0.14 -0.21 5.53 30.59 0.17 -0.04 16 9 C 0.14 -0.44 1.52 44.99 0.07 -0.37 16 10 H 0.10 -0.41 6.36 -2.39 -0.02 -0.42 16 11 N -1.11 0.76 5.21 -169.38 -0.88 -0.12 16 12 S 2.73 20.30 4.13 -56.49 -0.23 20.07 16 13 O -0.98 -11.69 17.10 -123.48 -2.11 -13.80 16 14 O -0.97 -13.57 16.39 -120.58 -1.98 -15.54 16 15 C -0.67 -3.74 5.72 21.22 0.12 -3.62 16 16 C -0.08 -0.53 5.78 24.59 0.14 -0.39 16 17 C -0.10 -0.31 2.34 71.24 0.17 -0.14 16 18 O -0.57 -2.81 9.56 -125.70 -1.20 -4.01 16 19 Si 0.78 -1.09 31.25 68.60 2.14 1.05 16 20 S 0.13 0.32 20.85 -56.49 -1.18 -0.86 16 21 C -0.20 0.42 11.23 66.72 0.75 1.17 16 22 C -0.10 0.07 9.04 21.22 0.19 0.26 16 23 C -0.12 1.08 5.21 30.58 0.16 1.24 16 24 C -0.12 1.11 5.39 30.58 0.16 1.28 16 25 H 0.41 -4.80 8.84 -92.71 -0.82 -5.62 16 26 H 0.42 -1.88 8.93 -92.71 -0.83 -2.71 16 27 H 0.41 -4.35 8.62 -92.71 -0.80 -5.15 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 0.38 7.91 -2.39 -0.02 0.36 16 31 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.43 -2.00 8.86 -96.75 -0.86 -2.86 16 33 H 0.12 -0.01 7.96 -2.39 -0.02 -0.03 16 34 H 0.42 -2.38 8.86 -74.06 -0.66 -3.04 16 35 H -0.28 -1.54 7.11 99.48 0.71 -0.83 16 36 H -0.25 -0.13 7.11 99.48 0.71 0.57 16 37 H 0.21 -2.00 8.06 -2.91 -0.02 -2.03 16 38 H 0.18 -1.37 4.45 -2.91 -0.01 -1.39 16 39 H 0.10 -1.29 7.21 -2.39 -0.02 -1.30 16 40 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.09 -1.21 8.14 -2.38 -0.02 -1.23 16 42 H 0.09 -1.03 8.14 -2.38 -0.02 -1.05 16 Total: 0.00 -36.10 360.49 -8.47 -44.57 By element: Atomic # 1 Polarization: -24.16 SS G_CDS: -2.79 Total: -26.95 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 3.79 Total: 3.48 kcal Atomic # 7 Polarization: 6.85 SS G_CDS: -4.85 Total: 2.00 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -5.36 Total: -43.37 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.14 Total: 1.05 kcal Atomic # 16 Polarization: 20.62 SS G_CDS: -1.41 Total: 19.21 kcal Total: -36.10 -8.47 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567574_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.278 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds