Wall clock time and date at job start Mon Mar 8 2021 10:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34775 * 1 3 3 O 1.21582 * 120.00032 * 2 1 4 4 N 1.34774 * 120.00051 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00212 * 179.97438 * 4 2 1 6 6 H 1.09007 * 109.46904 * 324.99653 * 5 4 2 7 7 C 1.53000 * 109.47320 * 84.99648 * 5 4 2 8 8 C 1.52995 * 109.46889 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47422 * 300.00089 * 8 7 5 10 10 H 1.08999 * 109.47512 * 299.99686 * 9 8 7 11 11 N 1.46500 * 109.46966 * 180.02562 * 9 8 7 12 12 S 1.65606 * 120.00055 * 95.00305 * 11 9 8 13 13 O 1.42105 * 106.40008 * 311.45637 * 12 11 9 14 14 O 1.42098 * 106.40370 * 178.53822 * 12 11 9 15 15 C 1.76193 * 107.21910 * 64.99793 * 12 11 9 16 16 C 1.33396 * 122.53894 * 269.71090 * 15 12 11 17 17 S 1.75881 * 109.59435 * 179.90358 * 16 15 12 18 18 C 1.75894 * 90.97052 * 0.30431 * 17 16 15 19 19 C 1.50700 * 125.20287 * 179.86752 * 18 17 16 20 20 O 1.42906 * 109.46775 * 244.95690 * 19 18 17 21 21 Si 1.86298 * 109.47302 * 4.95310 * 19 18 17 22 22 C 1.33391 * 109.59215 * 359.82714 * 18 17 16 23 23 C 1.52994 * 109.47192 * 60.00391 * 9 8 7 24 24 C 1.52999 * 109.47266 * 205.00111 * 5 4 2 25 25 H 0.97009 * 119.99933 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00034 * 359.97438 * 1 2 3 27 27 H 0.97009 * 120.00016 * 359.97438 * 4 2 1 28 28 H 1.09003 * 109.46814 * 300.00234 * 7 5 4 29 29 H 1.08995 * 109.46739 * 60.00268 * 7 5 4 30 30 H 1.09010 * 109.46716 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.46940 * 60.00633 * 8 7 5 32 32 H 0.97002 * 120.00335 * 275.00344 * 11 9 8 33 33 H 1.07998 * 125.20181 * 0.02738 * 16 15 12 34 34 H 1.08993 * 109.47348 * 124.95974 * 19 18 17 35 35 H 0.96696 * 113.99796 * 179.97438 * 20 19 18 36 36 H 1.48493 * 110.00156 * 178.68369 * 21 19 18 37 37 H 1.48506 * 110.00303 * 300.00498 * 21 19 18 38 38 H 1.07989 * 122.54041 * 180.02562 * 22 18 17 39 39 H 1.09003 * 109.47783 * 59.99673 * 23 9 8 40 40 H 1.08998 * 109.47510 * 180.02562 * 23 9 8 41 41 H 1.09003 * 109.47307 * 59.99325 * 24 5 4 42 42 H 1.09007 * 109.46785 * 299.99615 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9557 1.0529 0.0000 4 7 2.0216 -1.1672 -0.0005 5 6 3.4867 -1.1672 -0.0011 6 1 3.8498 -0.3253 -0.5906 7 6 3.9973 -1.0417 1.4357 8 6 5.5272 -1.0424 1.4351 9 6 6.0364 -2.3499 0.8252 10 1 5.6731 -3.1916 1.4148 11 7 7.5014 -2.3507 0.8252 12 16 8.3291 -3.0686 2.0671 13 8 7.7484 -2.5831 3.2698 14 8 9.7099 -2.9325 1.7606 15 6 7.9729 -4.7929 2.0032 16 6 6.9486 -5.3388 2.6608 17 16 6.9085 -7.0707 2.3570 18 6 8.3324 -6.9540 1.3310 19 6 8.9924 -8.1109 0.6259 20 8 10.3051 -8.3055 1.1560 21 14 7.9825 -9.6547 0.8863 22 6 8.7382 -5.6847 1.2717 23 6 5.5259 -2.4753 -0.6115 24 6 3.9964 -2.4744 -0.6112 25 1 -0.4850 -0.8401 -0.0004 26 1 -0.4850 0.8400 0.0004 27 1 1.5366 -2.0073 -0.0005 28 1 3.6341 -0.1104 1.8703 29 1 3.6342 -1.8836 2.0251 30 1 5.8910 -0.9526 2.4587 31 1 5.8907 -0.2007 0.8456 32 1 7.9867 -1.9308 0.0978 33 1 6.2497 -4.7995 3.2828 34 1 9.0594 -7.8961 -0.4405 35 1 10.7897 -9.0361 0.7480 36 1 8.6057 -10.7961 0.1696 37 1 7.8836 -9.9585 2.3365 38 1 9.5983 -5.3761 0.6963 39 1 5.8893 -1.6337 -1.2012 40 1 5.8883 -3.4070 -1.0459 41 1 3.6326 -2.5638 -1.6349 42 1 3.6333 -3.3164 -0.0217 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567574_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:36:03 Heat of formation + Delta-G solvation = -103.246348 kcal Electronic energy + Delta-G solvation = -28614.006982 eV Core-core repulsion = 24428.124362 eV Total energy + Delta-G solvation = -4185.882620 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.085 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.15333 -39.64937 -39.43368 -38.15530 -37.73558 -36.80856 -36.22663 -34.71565 -33.25315 -32.04021 -31.92774 -28.84432 -27.26017 -24.88245 -23.96210 -23.62831 -21.86823 -21.52170 -21.12797 -20.14457 -19.20637 -19.03597 -18.64325 -18.52245 -18.23461 -17.74931 -17.51315 -16.33693 -16.29813 -16.17116 -15.84274 -15.71365 -15.44268 -15.23019 -14.90266 -14.48141 -14.37221 -14.28018 -14.14611 -14.02199 -13.91728 -13.43867 -13.33012 -13.07795 -12.97637 -12.91545 -12.65148 -12.59942 -12.48431 -12.40849 -12.22763 -11.80227 -11.58596 -11.53164 -11.20755 -10.74799 -10.65332 -10.54590 -10.23104 -9.99195 -9.85598 -5.24536 -0.73525 -0.50374 0.27949 0.54564 0.93587 1.11391 1.40042 1.75001 1.87349 2.06262 2.28023 2.74319 3.08925 3.35065 3.43808 3.47838 3.55334 3.61921 3.78894 3.85575 3.89813 4.02567 4.07461 4.14583 4.25031 4.31040 4.35902 4.41394 4.59459 4.64547 4.70005 4.87533 4.88716 4.98192 4.99633 5.05267 5.20353 5.23147 5.33386 5.52989 5.73881 5.87167 5.96482 6.24300 6.97417 7.68145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.705 3.295 3 O -0.592 6.592 4 N -0.743 5.743 5 C 0.159 3.841 6 H 0.092 0.908 7 C -0.129 4.129 8 C -0.138 4.138 9 C 0.153 3.847 10 H 0.084 0.916 11 N -1.110 6.110 12 S 2.707 3.293 13 O -0.949 6.949 14 O -0.952 6.952 15 C -0.684 4.684 16 C -0.091 4.091 17 S 0.167 5.833 18 C -0.182 4.182 19 C -0.036 4.036 20 O -0.530 6.530 21 Si 0.647 3.353 22 C -0.042 4.042 23 C -0.121 4.121 24 C -0.125 4.125 25 H 0.397 0.603 26 H 0.416 0.584 27 H 0.396 0.604 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.421 0.579 33 H 0.186 0.814 34 H 0.089 0.911 35 H 0.384 0.616 36 H -0.237 1.237 37 H -0.235 1.235 38 H 0.156 0.844 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 -6.204 -5.067 10.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.403 3.597 3 O -0.469 6.469 4 N -0.398 5.398 5 C 0.054 3.946 6 H 0.110 0.890 7 C -0.168 4.168 8 C -0.177 4.177 9 C 0.046 3.954 10 H 0.102 0.898 11 N -0.870 5.870 12 S 2.793 3.207 13 O -0.939 6.939 14 O -0.942 6.942 15 C -0.784 4.784 16 C -0.230 4.230 17 S 0.431 5.569 18 C -0.300 4.300 19 C -0.148 4.148 20 O -0.339 6.339 21 Si 0.545 3.455 22 C -0.071 4.071 23 C -0.161 4.161 24 C -0.164 4.164 25 H 0.224 0.776 26 H 0.248 0.752 27 H 0.230 0.770 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.256 0.744 33 H 0.204 0.796 34 H 0.107 0.893 35 H 0.233 0.767 36 H -0.160 1.160 37 H -0.158 1.158 38 H 0.174 0.826 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.970 -6.625 -3.173 10.126 hybrid contribution 1.243 -0.078 -1.061 1.636 sum -5.727 -6.703 -4.234 9.780 Atomic orbital electron populations 1.43034 1.05474 1.12666 1.82505 1.15998 0.82068 0.84323 0.77348 1.90997 1.67768 1.30408 1.57757 1.45174 1.07195 1.07095 1.80349 1.20928 0.77892 0.98950 0.96838 0.89003 1.21928 0.94978 1.03291 0.96628 1.22070 0.95187 0.97484 1.02997 1.20870 0.78001 0.98759 0.97754 0.89787 1.55633 1.15443 1.72366 1.43512 1.01707 0.72901 0.72814 0.73252 1.93616 1.78733 1.78003 1.43577 1.93617 1.30493 1.85806 1.84270 1.30037 1.07426 1.27802 1.13122 1.25930 0.99383 0.98614 0.99056 1.84366 1.25241 1.04863 1.42430 1.23781 1.01920 0.97694 1.06568 1.24038 0.88806 1.03329 0.98599 1.86629 1.25777 1.55913 1.65532 0.95411 0.88693 0.77492 0.83901 1.19581 0.98853 0.90707 0.97961 1.21778 0.94844 1.03764 0.95715 1.21776 0.95471 0.97071 1.02036 0.77577 0.75232 0.77041 0.90584 0.91503 0.89737 0.90637 0.74353 0.79644 0.89315 0.76713 1.15972 1.15849 0.82648 0.90398 0.90259 0.90455 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 2.18 8.88 27.63 0.25 2.42 16 2 C 0.70 0.80 8.80 -86.92 -0.77 0.04 16 3 O -0.59 -3.68 16.84 5.29 0.09 -3.59 16 4 N -0.74 1.53 5.08 -58.67 -0.30 1.23 16 5 C 0.16 -0.28 2.45 -67.93 -0.17 -0.44 16 6 H 0.09 0.05 7.58 -51.93 -0.39 -0.35 16 7 C -0.13 0.14 5.50 -26.73 -0.15 -0.01 16 8 C -0.14 0.15 5.53 -26.74 -0.15 0.00 16 9 C 0.15 -0.42 2.65 -67.94 -0.18 -0.60 16 10 H 0.08 -0.33 7.37 -51.93 -0.38 -0.71 16 11 N -1.11 2.22 5.47 -4.90 -0.03 2.20 16 12 S 2.71 3.53 5.71 -107.50 -0.61 2.92 16 13 O -0.95 -3.56 16.90 -57.17 -0.97 -4.53 16 14 O -0.95 -4.48 17.63 -57.17 -1.01 -5.49 16 15 C -0.68 -0.35 5.73 -41.21 -0.24 -0.58 16 16 C -0.09 0.07 10.22 29.04 0.30 0.37 16 17 S 0.17 -0.16 20.60 -107.50 -2.21 -2.37 16 18 C -0.18 -0.08 5.73 -36.00 -0.21 -0.29 16 19 C -0.04 0.03 2.95 36.01 0.11 0.14 16 20 O -0.53 -0.34 12.86 -35.23 -0.45 -0.79 16 21 Si 0.65 -1.16 30.98 -169.99 -5.27 -6.42 16 22 C -0.04 -0.05 9.59 -41.21 -0.40 -0.44 16 23 C -0.12 0.50 5.45 -26.76 -0.15 0.36 16 24 C -0.12 0.54 5.39 -26.76 -0.14 0.39 16 25 H 0.40 -2.26 8.84 -40.82 -0.36 -2.62 16 26 H 0.42 -1.12 8.93 -40.82 -0.36 -1.48 16 27 H 0.40 -2.00 8.62 -40.82 -0.35 -2.36 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 30 H 0.08 0.03 7.64 -51.92 -0.40 -0.37 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.42 -1.52 8.84 -34.47 -0.30 -1.83 16 33 H 0.19 -0.57 8.00 -52.49 -0.42 -0.99 16 34 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 35 H 0.38 -1.40 8.74 45.56 0.40 -1.00 16 36 H -0.24 0.07 7.11 56.52 0.40 0.47 16 37 H -0.23 -0.29 7.11 56.52 0.40 0.11 16 38 H 0.16 0.13 7.96 -52.49 -0.42 -0.29 16 39 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 40 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 41 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 42 H 0.07 -0.40 8.14 -51.93 -0.42 -0.82 16 LS Contribution 372.63 15.07 5.62 5.62 Total: 0.00 -13.88 372.63 -12.59 -26.47 By element: Atomic # 1 Polarization: -11.04 SS G_CDS: -5.56 Total: -16.60 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.13 Total: -1.06 kcal Atomic # 7 Polarization: 5.93 SS G_CDS: -0.08 Total: 5.85 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -2.34 Total: -14.40 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.27 Total: -6.42 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.83 Total: 0.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -13.88 -12.59 -26.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567574_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.772 kcal (2) G-P(sol) polarization free energy of solvation -13.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds