Wall clock time and date at job start Mon Mar 8 2021 10:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33398 * 125.20434 * 2 1 4 4 C 1.50698 * 122.53820 * 0.05879 * 3 2 1 5 5 O 1.42901 * 109.47298 * 67.58243 * 4 3 2 6 6 Si 1.86304 * 109.47140 * 307.58692 * 4 3 2 7 7 C 1.38421 * 114.92167 * 180.02562 * 3 2 1 8 8 S 1.76202 * 122.53676 * 179.97438 * 7 3 2 9 9 O 1.42104 * 106.39689 * 161.50371 * 8 7 3 10 10 O 1.42101 * 106.40068 * 28.58908 * 8 7 3 11 11 N 1.65597 * 107.21982 * 275.04286 * 8 7 3 12 12 C 1.46504 * 119.99854 * 65.00400 * 11 8 7 13 13 H 1.08997 * 109.46727 * 335.00055 * 12 11 8 14 14 C 1.52998 * 109.47067 * 94.99884 * 12 11 8 15 15 C 1.53000 * 109.47200 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46697 * 299.99989 * 15 14 12 17 17 H 1.08996 * 109.46968 * 299.99838 * 16 15 14 18 18 N 1.46504 * 109.46984 * 180.02562 * 16 15 14 19 19 C 1.34779 * 119.99825 * 154.99827 * 18 16 15 20 20 N 1.34781 * 119.99739 * 179.97438 * 19 18 16 21 21 O 1.21590 * 119.99877 * 0.02562 * 19 18 16 22 22 C 1.52999 * 109.47413 * 59.99693 * 16 15 14 23 23 C 1.52993 * 109.46836 * 214.99962 * 12 11 8 24 24 C 1.33391 * 114.92231 * 0.25132 * 7 3 2 25 25 C 1.50699 * 125.20093 * 179.75371 * 24 7 3 26 26 S 1.75884 * 109.59256 * 359.63289 * 24 7 3 27 27 H 1.08996 * 109.47255 * 93.75559 * 1 2 3 28 28 H 1.08996 * 109.46904 * 213.75944 * 1 2 3 29 29 H 1.09000 * 109.46948 * 333.75750 * 1 2 3 30 30 H 1.08998 * 109.47329 * 187.58843 * 4 3 2 31 31 H 0.96695 * 114.00045 * 179.97438 * 5 4 3 32 32 H 1.48499 * 109.99883 * 308.22753 * 6 4 3 33 33 H 1.48507 * 109.99935 * 69.54526 * 6 4 3 34 34 H 0.96998 * 120.00309 * 244.99990 * 11 8 7 35 35 H 1.08996 * 109.47301 * 59.99920 * 14 12 11 36 36 H 1.09002 * 109.47216 * 299.99496 * 14 12 11 37 37 H 1.08997 * 109.47442 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.46997 * 59.99241 * 15 14 12 39 39 H 0.96996 * 120.00258 * 334.99493 * 18 16 15 40 40 H 0.96998 * 119.99802 * 0.02562 * 20 19 18 41 41 H 0.96995 * 119.99343 * 180.02562 * 20 19 18 42 42 H 1.09005 * 109.46706 * 60.00224 * 22 16 15 43 43 H 1.08998 * 109.47342 * 179.97438 * 22 16 15 44 44 H 1.08999 * 109.47821 * 60.00010 * 23 12 11 45 45 H 1.09002 * 109.47357 * 299.99139 * 23 12 11 46 46 H 1.08997 * 109.46911 * 84.34474 * 25 24 7 47 47 H 1.08999 * 109.46905 * 204.34032 * 25 24 7 48 48 H 1.08994 * 109.47127 * 324.33672 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4847 0.0013 5 8 1.0503 2.7302 1.2475 6 14 0.4772 2.6545 -1.3895 7 6 3.6380 0.8429 -0.0006 8 16 4.8356 2.1353 -0.0013 9 8 6.0567 1.5509 0.4307 10 8 4.2306 3.2433 0.6511 11 7 5.0661 2.5891 -1.5771 12 6 3.9695 3.2023 -2.3307 13 1 3.0164 2.8916 -1.9029 14 6 4.0893 4.7258 -2.2568 15 6 2.9437 5.3662 -3.0433 16 6 3.0162 4.9192 -4.5047 17 1 3.9691 5.2299 -4.9329 18 7 1.9196 5.5328 -5.2580 19 6 2.0363 5.7174 -6.5880 20 7 1.0273 6.2815 -7.2810 21 8 3.0514 5.3743 -7.1627 22 6 2.8965 3.3957 -4.5787 23 6 4.0426 2.7553 -3.7921 24 6 3.9751 -0.4477 -0.0063 25 6 5.3861 -0.9769 -0.0134 26 16 2.5210 -1.4371 -0.0008 27 1 -0.3633 -0.0673 -1.0254 28 1 -0.3633 -0.8544 0.5711 29 1 -0.3633 0.9218 0.4544 30 1 2.5102 3.2069 -0.1346 31 1 0.6586 3.6114 1.3190 32 1 1.0915 2.2103 -2.6664 33 1 -0.7335 1.8448 -1.0997 34 1 5.9272 2.4491 -2.0012 35 1 5.0424 5.0365 -2.6846 36 1 4.0372 5.0443 -1.2157 37 1 3.0287 6.4515 -2.9903 38 1 1.9908 5.0553 -2.6151 39 1 1.1097 5.8062 -4.7996 40 1 0.2174 6.5549 -6.8226 41 1 1.1111 6.4140 -8.2382 42 1 1.9435 3.0849 -4.1505 43 1 2.9477 3.0773 -5.6199 44 1 3.9573 1.6699 -3.8448 45 1 4.9957 3.0661 -4.2199 46 1 5.7656 -1.0133 1.0077 47 1 5.3958 -1.9797 -0.4405 48 1 6.0172 -0.3207 -0.6126 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567574_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:36:08 Heat of formation + Delta-G solvation = -92.997866 kcal Electronic energy + Delta-G solvation = -34961.919932 eV Core-core repulsion = 30465.406482 eV Total energy + Delta-G solvation = -4496.513450 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.116 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.20030 -40.32081 -39.63663 -38.44059 -37.13199 -36.88469 -36.27019 -34.73040 -34.41239 -33.28613 -31.97256 -31.01673 -28.91887 -28.12055 -26.03401 -24.00620 -23.67089 -23.14746 -21.87198 -21.65478 -20.63255 -19.90575 -19.33341 -19.02262 -18.49960 -18.32453 -18.18344 -17.67908 -17.11062 -16.39543 -16.28680 -16.17170 -15.86508 -15.64567 -15.48656 -15.33627 -15.18121 -14.84589 -14.67607 -14.47216 -14.39212 -14.19174 -14.09620 -13.98105 -13.77439 -13.46867 -13.43158 -13.34865 -13.12069 -13.00121 -12.89355 -12.59101 -12.57324 -12.32925 -12.25724 -12.16810 -12.02135 -11.69181 -11.53749 -11.21912 -11.13902 -10.67235 -10.62088 -10.31709 -10.03550 -10.00991 -9.52050 -5.16156 -0.76792 -0.46307 0.32575 0.62162 0.79422 1.19869 1.44495 1.82336 1.85654 2.01411 2.26641 2.65648 3.20274 3.28696 3.40135 3.46354 3.55963 3.58898 3.73651 3.77875 3.86316 3.95404 4.02108 4.04938 4.08189 4.20430 4.25107 4.32360 4.35040 4.40408 4.45907 4.48351 4.57390 4.62988 4.65618 4.82069 4.90589 4.92452 4.97648 5.00784 5.02203 5.02814 5.15360 5.20226 5.27170 5.50599 5.73352 5.80971 5.95497 6.63975 6.96993 7.66974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.175 4.175 3 C -0.032 4.032 4 C -0.079 4.079 5 O -0.533 6.533 6 Si 0.636 3.364 7 C -0.684 4.684 8 S 2.703 3.297 9 O -0.951 6.951 10 O -0.938 6.938 11 N -1.111 6.111 12 C 0.144 3.856 13 H 0.080 0.920 14 C -0.138 4.138 15 C -0.128 4.128 16 C 0.160 3.840 17 H 0.094 0.906 18 N -0.742 5.742 19 C 0.705 3.295 20 N -0.869 5.869 21 O -0.593 6.593 22 C -0.137 4.137 23 C -0.122 4.122 24 C -0.048 4.048 25 C -0.110 4.110 26 S 0.161 5.839 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.383 0.617 32 H -0.238 1.238 33 H -0.226 1.226 34 H 0.422 0.578 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.397 0.603 41 H 0.415 0.585 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.081 0.919 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 2.297 -2.210 6.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.293 4.293 3 C -0.043 4.043 4 C -0.192 4.192 5 O -0.339 6.339 6 Si 0.535 3.465 7 C -0.783 4.783 8 S 2.790 3.210 9 O -0.941 6.941 10 O -0.928 6.928 11 N -0.871 5.871 12 C 0.038 3.962 13 H 0.098 0.902 14 C -0.178 4.178 15 C -0.166 4.166 16 C 0.055 3.945 17 H 0.112 0.888 18 N -0.398 5.398 19 C 0.403 3.597 20 N -0.437 5.437 21 O -0.471 6.471 22 C -0.176 4.176 23 C -0.162 4.162 24 C -0.169 4.169 25 C -0.169 4.169 26 S 0.427 5.573 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.231 0.769 32 H -0.162 1.162 33 H -0.150 1.150 34 H 0.257 0.743 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.231 0.769 40 H 0.225 0.775 41 H 0.248 0.752 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.693 -0.317 -2.231 5.206 hybrid contribution -0.360 0.677 -0.060 0.769 sum -5.052 0.360 -2.291 5.559 Atomic orbital electron populations 1.20787 0.87246 1.04849 1.02712 1.24450 1.00375 0.95297 1.09131 1.17536 0.89940 0.94654 1.02140 1.25062 1.03693 0.94165 0.96236 1.86462 1.74917 1.38285 1.34284 0.96704 0.81624 0.91035 0.77113 1.29490 1.11722 1.13612 1.23462 1.01764 0.73097 0.73648 0.72467 1.93608 1.42689 1.78493 1.79332 1.93553 1.77480 1.49762 1.71991 1.55677 1.21656 1.76568 1.33193 1.21068 0.88501 0.93474 0.93198 0.90246 1.22082 0.99674 0.93658 1.02363 1.21844 0.99442 1.01826 0.93534 1.20905 0.90845 0.91907 0.90838 0.88805 1.45166 1.21008 1.66997 1.06599 1.15998 0.83590 0.78301 0.81800 1.43031 1.19346 1.68505 1.12781 1.90993 1.29816 1.57196 1.69045 1.22078 0.98862 0.95211 1.01482 1.21802 1.00208 1.01146 0.93016 1.24604 1.00820 0.94914 0.96553 1.20925 0.87982 1.02261 1.05722 1.84393 0.95183 1.08311 1.69399 0.90699 0.90301 0.88511 0.88176 0.76932 1.16231 1.15028 0.74303 0.90109 0.89179 0.89839 0.90908 0.76903 0.77518 0.75240 0.91119 0.90457 0.90876 0.90184 0.87947 0.90009 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.10 8.08 36.00 0.29 0.20 16 2 C -0.17 -0.43 6.10 -36.00 -0.22 -0.65 16 3 C -0.03 -0.09 4.29 -106.25 -0.46 -0.55 16 4 C -0.08 -0.09 1.71 36.00 0.06 -0.03 16 5 O -0.53 -0.72 11.97 -35.23 -0.42 -1.14 16 6 Si 0.64 -1.00 26.58 -169.99 -4.52 -5.52 16 7 C -0.68 -1.86 5.74 -41.21 -0.24 -2.10 16 8 S 2.70 6.11 5.27 -107.50 -0.57 5.55 16 9 O -0.95 -3.82 14.91 -57.17 -0.85 -4.67 16 10 O -0.94 -3.81 14.13 -57.17 -0.81 -4.62 16 11 N -1.11 1.10 5.47 -4.89 -0.03 1.07 16 12 C 0.14 -0.19 2.39 -67.93 -0.16 -0.35 16 13 H 0.08 -0.08 2.47 -51.93 -0.13 -0.21 16 14 C -0.14 0.31 5.53 -26.73 -0.15 0.16 16 15 C -0.13 0.45 5.39 -26.73 -0.14 0.30 16 16 C 0.16 -0.25 2.45 -67.93 -0.17 -0.41 16 17 H 0.09 0.04 7.58 -51.93 -0.39 -0.36 16 18 N -0.74 1.59 5.08 -58.67 -0.30 1.29 16 19 C 0.71 0.63 8.80 -86.91 -0.77 -0.14 16 20 N -0.87 2.39 8.88 27.64 0.25 2.63 16 21 O -0.59 -3.50 16.84 5.29 0.09 -3.41 16 22 C -0.14 0.13 5.50 -26.71 -0.15 -0.02 16 23 C -0.12 0.19 5.45 -26.71 -0.15 0.04 16 24 C -0.05 -0.09 6.50 -36.00 -0.23 -0.32 16 25 C -0.11 -0.02 8.88 36.01 0.32 0.30 16 26 S 0.16 0.22 23.31 -107.50 -2.51 -2.28 16 27 H 0.07 0.02 7.02 -51.93 -0.36 -0.35 16 28 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 29 H 0.10 0.10 5.14 -51.93 -0.27 -0.16 16 30 H 0.10 0.08 3.37 -51.93 -0.17 -0.10 16 31 H 0.38 -1.35 8.74 45.56 0.40 -0.95 16 32 H -0.24 0.09 5.22 56.52 0.29 0.39 16 33 H -0.23 0.04 4.99 56.52 0.28 0.32 16 34 H 0.42 -1.31 8.84 -34.47 -0.30 -1.62 16 35 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 36 H 0.09 -0.16 7.64 -51.93 -0.40 -0.55 16 37 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 38 H 0.07 -0.37 7.13 -51.93 -0.37 -0.74 16 39 H 0.40 -2.11 8.62 -40.82 -0.35 -2.46 16 40 H 0.40 -2.37 8.84 -40.82 -0.36 -2.73 16 41 H 0.42 -1.22 8.93 -40.82 -0.36 -1.59 16 42 H 0.07 -0.09 6.28 -51.93 -0.33 -0.41 16 43 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 45 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 46 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 47 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 48 H 0.10 -0.03 6.47 -51.93 -0.34 -0.37 16 LS Contribution 381.67 15.07 5.75 5.75 Total: 0.00 -12.44 381.67 -12.61 -25.05 By element: Atomic # 1 Polarization: -9.58 SS G_CDS: -6.55 Total: -16.13 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.15 Total: -3.58 kcal Atomic # 7 Polarization: 5.08 SS G_CDS: -0.08 Total: 5.00 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.99 Total: -13.84 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -4.52 Total: -5.52 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -3.07 Total: 3.26 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -12.44 -12.61 -25.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567574_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.945 kcal (2) G-P(sol) polarization free energy of solvation -12.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds