Wall clock time and date at job start Mon Mar 8 2021 10:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33398 * 125.20434 * 2 1 4 4 C 1.50698 * 122.53820 * 0.05879 * 3 2 1 5 5 O 1.42901 * 109.47298 * 67.58243 * 4 3 2 6 6 Si 1.86304 * 109.47140 * 307.58692 * 4 3 2 7 7 C 1.38421 * 114.92167 * 180.02562 * 3 2 1 8 8 S 1.76202 * 122.53676 * 179.97438 * 7 3 2 9 9 O 1.42104 * 106.39689 * 161.50371 * 8 7 3 10 10 O 1.42101 * 106.40068 * 28.58908 * 8 7 3 11 11 N 1.65597 * 107.21982 * 275.04286 * 8 7 3 12 12 C 1.46504 * 119.99854 * 65.00400 * 11 8 7 13 13 H 1.08997 * 109.46727 * 335.00055 * 12 11 8 14 14 C 1.52998 * 109.47067 * 94.99884 * 12 11 8 15 15 C 1.53000 * 109.47200 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46697 * 299.99989 * 15 14 12 17 17 H 1.08996 * 109.46968 * 299.99838 * 16 15 14 18 18 N 1.46504 * 109.46984 * 180.02562 * 16 15 14 19 19 C 1.34779 * 119.99825 * 154.99827 * 18 16 15 20 20 N 1.34781 * 119.99739 * 179.97438 * 19 18 16 21 21 O 1.21590 * 119.99877 * 0.02562 * 19 18 16 22 22 C 1.52999 * 109.47413 * 59.99693 * 16 15 14 23 23 C 1.52993 * 109.46836 * 214.99962 * 12 11 8 24 24 C 1.33391 * 114.92231 * 0.25132 * 7 3 2 25 25 C 1.50699 * 125.20093 * 179.75371 * 24 7 3 26 26 S 1.75884 * 109.59256 * 359.63289 * 24 7 3 27 27 H 1.08996 * 109.47255 * 93.75559 * 1 2 3 28 28 H 1.08996 * 109.46904 * 213.75944 * 1 2 3 29 29 H 1.09000 * 109.46948 * 333.75750 * 1 2 3 30 30 H 1.08998 * 109.47329 * 187.58843 * 4 3 2 31 31 H 0.96695 * 114.00045 * 179.97438 * 5 4 3 32 32 H 1.48499 * 109.99883 * 308.22753 * 6 4 3 33 33 H 1.48507 * 109.99935 * 69.54526 * 6 4 3 34 34 H 0.96998 * 120.00309 * 244.99990 * 11 8 7 35 35 H 1.08996 * 109.47301 * 59.99920 * 14 12 11 36 36 H 1.09002 * 109.47216 * 299.99496 * 14 12 11 37 37 H 1.08997 * 109.47442 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.46997 * 59.99241 * 15 14 12 39 39 H 0.96996 * 120.00258 * 334.99493 * 18 16 15 40 40 H 0.96998 * 119.99802 * 0.02562 * 20 19 18 41 41 H 0.96995 * 119.99343 * 180.02562 * 20 19 18 42 42 H 1.09005 * 109.46706 * 60.00224 * 22 16 15 43 43 H 1.08998 * 109.47342 * 179.97438 * 22 16 15 44 44 H 1.08999 * 109.47821 * 60.00010 * 23 12 11 45 45 H 1.09002 * 109.47357 * 299.99139 * 23 12 11 46 46 H 1.08997 * 109.46911 * 84.34474 * 25 24 7 47 47 H 1.08999 * 109.46905 * 204.34032 * 25 24 7 48 48 H 1.08994 * 109.47127 * 324.33672 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4847 0.0013 5 8 1.0503 2.7302 1.2475 6 14 0.4772 2.6545 -1.3895 7 6 3.6380 0.8429 -0.0006 8 16 4.8356 2.1353 -0.0013 9 8 6.0567 1.5509 0.4307 10 8 4.2306 3.2433 0.6511 11 7 5.0661 2.5891 -1.5771 12 6 3.9695 3.2023 -2.3307 13 1 3.0164 2.8916 -1.9029 14 6 4.0893 4.7258 -2.2568 15 6 2.9437 5.3662 -3.0433 16 6 3.0162 4.9192 -4.5047 17 1 3.9691 5.2299 -4.9329 18 7 1.9196 5.5328 -5.2580 19 6 2.0363 5.7174 -6.5880 20 7 1.0273 6.2815 -7.2810 21 8 3.0514 5.3743 -7.1627 22 6 2.8965 3.3957 -4.5787 23 6 4.0426 2.7553 -3.7921 24 6 3.9751 -0.4477 -0.0063 25 6 5.3861 -0.9769 -0.0134 26 16 2.5210 -1.4371 -0.0008 27 1 -0.3633 -0.0673 -1.0254 28 1 -0.3633 -0.8544 0.5711 29 1 -0.3633 0.9218 0.4544 30 1 2.5102 3.2069 -0.1346 31 1 0.6586 3.6114 1.3190 32 1 1.0915 2.2103 -2.6664 33 1 -0.7335 1.8448 -1.0997 34 1 5.9272 2.4491 -2.0012 35 1 5.0424 5.0365 -2.6846 36 1 4.0372 5.0443 -1.2157 37 1 3.0287 6.4515 -2.9903 38 1 1.9908 5.0553 -2.6151 39 1 1.1097 5.8062 -4.7996 40 1 0.2174 6.5549 -6.8226 41 1 1.1111 6.4140 -8.2382 42 1 1.9435 3.0849 -4.1505 43 1 2.9477 3.0773 -5.6199 44 1 3.9573 1.6699 -3.8448 45 1 4.9957 3.0661 -4.2199 46 1 5.7656 -1.0133 1.0077 47 1 5.3958 -1.9797 -0.4405 48 1 6.0172 -0.3207 -0.6126 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567574_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:36:07 Heat of formation + Delta-G solvation = -102.776283 kcal Electronic energy + Delta-G solvation = -34962.343956 eV Core-core repulsion = 30465.406482 eV Total energy + Delta-G solvation = -4496.937474 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.116 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.16407 -40.38300 -39.60935 -38.63330 -37.18814 -37.10205 -36.24712 -34.74735 -34.47526 -33.19332 -31.82031 -31.05853 -28.84242 -28.13825 -26.11440 -23.89627 -23.56416 -23.21357 -21.84591 -21.55590 -20.71228 -20.00484 -19.34948 -19.00034 -18.58253 -18.24750 -18.21271 -17.68878 -17.19545 -16.38904 -16.24517 -16.16692 -15.93702 -15.71372 -15.48937 -15.23234 -15.21226 -14.83384 -14.67861 -14.52957 -14.32835 -14.21914 -14.06110 -13.99150 -13.79866 -13.54781 -13.48355 -13.36114 -13.18443 -13.05657 -12.97153 -12.69402 -12.50388 -12.26344 -12.14655 -12.09210 -11.97945 -11.75248 -11.54319 -11.35977 -11.05831 -10.67847 -10.55211 -10.32639 -10.13359 -9.89570 -9.59495 -5.03709 -0.89407 -0.58435 0.23832 0.52332 0.70281 1.24998 1.56775 1.87738 1.92272 2.04344 2.23360 2.51934 3.08305 3.28820 3.50610 3.53524 3.65834 3.71804 3.76144 3.89298 3.93545 3.98080 4.00132 4.11852 4.17882 4.21584 4.33093 4.39334 4.45074 4.46853 4.49268 4.51031 4.58362 4.72520 4.77543 4.82854 4.85932 4.99832 5.05020 5.08598 5.09482 5.14600 5.23444 5.34214 5.40672 5.62349 5.94548 5.97104 6.09893 6.86287 7.18736 7.72660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.193 4.193 3 C -0.050 4.050 4 C -0.104 4.104 5 O -0.554 6.554 6 Si 0.719 3.281 7 C -0.700 4.700 8 S 2.713 3.287 9 O -0.974 6.974 10 O -0.959 6.959 11 N -1.100 6.100 12 C 0.142 3.858 13 H 0.078 0.922 14 C -0.140 4.140 15 C -0.123 4.123 16 C 0.161 3.839 17 H 0.072 0.928 18 N -0.728 5.728 19 C 0.697 3.303 20 N -0.853 5.853 21 O -0.649 6.649 22 C -0.133 4.133 23 C -0.120 4.120 24 C -0.054 4.054 25 C -0.116 4.116 26 S 0.173 5.827 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.401 0.599 32 H -0.253 1.253 33 H -0.245 1.245 34 H 0.431 0.569 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.415 0.585 40 H 0.415 0.585 41 H 0.417 0.583 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 2.877 -2.349 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.311 4.311 3 C -0.060 4.060 4 C -0.213 4.213 5 O -0.363 6.363 6 Si 0.618 3.382 7 C -0.799 4.799 8 S 2.801 3.199 9 O -0.964 6.964 10 O -0.949 6.949 11 N -0.862 5.862 12 C 0.035 3.965 13 H 0.096 0.904 14 C -0.180 4.180 15 C -0.162 4.162 16 C 0.056 3.944 17 H 0.090 0.910 18 N -0.384 5.384 19 C 0.395 3.605 20 N -0.422 5.422 21 O -0.531 6.531 22 C -0.173 4.173 23 C -0.160 4.160 24 C -0.176 4.176 25 C -0.175 4.175 26 S 0.440 5.560 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.252 0.748 32 H -0.179 1.179 33 H -0.170 1.170 34 H 0.269 0.731 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.252 0.748 40 H 0.246 0.754 41 H 0.250 0.750 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.987 0.306 -2.322 6.429 hybrid contribution 0.026 0.475 0.001 0.475 sum -5.962 0.781 -2.321 6.445 Atomic orbital electron populations 1.20856 0.86458 1.05175 1.03291 1.24724 1.01188 0.95633 1.09563 1.17868 0.90116 0.95828 1.02171 1.25489 1.05089 0.93272 0.97478 1.86408 1.75165 1.39974 1.34792 0.95855 0.78690 0.89510 0.74131 1.29580 1.11967 1.13973 1.24358 1.01267 0.72453 0.73231 0.72969 1.93573 1.43687 1.78839 1.80275 1.93524 1.77753 1.50521 1.73069 1.55423 1.22371 1.76243 1.32203 1.21176 0.88219 0.94174 0.92913 0.90398 1.22112 1.00543 0.92863 1.02492 1.21849 0.99996 1.02548 0.91761 1.20848 0.90178 0.91474 0.91920 0.90970 1.45000 1.21578 1.66161 1.05684 1.16281 0.83426 0.78262 0.82553 1.42880 1.19166 1.67242 1.12863 1.90953 1.32210 1.59623 1.70318 1.22026 0.99366 0.95754 1.00140 1.21779 1.00306 1.01026 0.92864 1.24883 1.01694 0.94971 0.96005 1.21051 0.87120 1.03483 1.05814 1.84252 0.94755 1.07898 1.69138 0.89993 0.89510 0.88662 0.88226 0.74848 1.17863 1.17008 0.73100 0.89803 0.89359 0.88491 0.88752 0.74751 0.75443 0.75028 0.90430 0.92713 0.91052 0.89813 0.88185 0.87962 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.19 8.08 71.23 0.58 0.39 16 2 C -0.19 -1.01 6.10 24.59 0.15 -0.86 16 3 C -0.05 -0.31 4.29 -20.92 -0.09 -0.40 16 4 C -0.10 -0.23 1.71 71.24 0.12 -0.11 16 5 O -0.55 -1.56 11.97 -148.98 -1.78 -3.34 16 6 Si 0.72 -2.96 26.58 68.60 1.82 -1.13 16 7 C -0.70 -4.34 5.74 21.22 0.12 -4.22 16 8 S 2.71 14.56 5.27 -56.49 -0.30 14.26 16 9 O -0.97 -8.86 14.91 -128.00 -1.91 -10.77 16 10 O -0.96 -8.57 14.13 -128.00 -1.81 -10.38 16 11 N -1.10 1.66 5.47 -169.40 -0.93 0.74 16 12 C 0.14 -0.37 2.39 44.99 0.11 -0.26 16 13 H 0.08 -0.17 2.47 -2.39 -0.01 -0.18 16 14 C -0.14 0.68 5.53 30.59 0.17 0.85 16 15 C -0.12 1.00 5.39 30.59 0.16 1.16 16 16 C 0.16 -0.51 2.45 44.99 0.11 -0.40 16 17 H 0.07 0.12 7.58 -2.39 -0.02 0.11 16 18 N -0.73 3.57 5.08 -457.80 -2.33 1.25 16 19 C 0.70 1.35 8.80 179.05 1.58 2.92 16 20 N -0.85 5.19 8.88 -184.74 -1.64 3.55 16 21 O -0.65 -8.57 16.84 -4.00 -0.07 -8.64 16 22 C -0.13 0.20 5.50 30.61 0.17 0.37 16 23 C -0.12 0.32 5.45 30.61 0.17 0.49 16 24 C -0.05 -0.24 6.50 24.59 0.16 -0.08 16 25 C -0.12 -0.08 8.88 71.24 0.63 0.55 16 26 S 0.17 0.54 23.31 -56.49 -1.32 -0.78 16 27 H 0.08 0.01 7.02 -2.39 -0.02 -0.01 16 28 H 0.09 -0.02 8.14 -2.39 -0.02 -0.03 16 29 H 0.09 0.20 5.14 -2.39 -0.01 0.19 16 30 H 0.10 0.16 3.37 -2.39 -0.01 0.15 16 31 H 0.40 -2.92 8.74 -74.06 -0.65 -3.57 16 32 H -0.25 0.47 5.22 99.48 0.52 0.99 16 33 H -0.24 0.31 4.99 99.48 0.50 0.81 16 34 H 0.43 -2.47 8.84 -96.75 -0.85 -3.32 16 35 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.09 -0.34 7.64 -2.39 -0.02 -0.36 16 37 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H 0.09 -1.17 7.13 -2.39 -0.02 -1.18 16 39 H 0.42 -5.15 8.62 -92.71 -0.80 -5.95 16 40 H 0.41 -5.55 8.84 -92.71 -0.82 -6.37 16 41 H 0.42 -2.55 8.93 -92.71 -0.83 -3.38 16 42 H 0.08 -0.23 6.28 -2.38 -0.01 -0.24 16 43 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 48 H 0.10 0.01 6.47 -2.39 -0.02 -0.01 16 Total: 0.00 -29.99 381.67 -9.33 -39.33 By element: Atomic # 1 Polarization: -21.26 SS G_CDS: -3.22 Total: -24.48 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.14 Total: 0.40 kcal Atomic # 7 Polarization: 10.42 SS G_CDS: -4.89 Total: 5.53 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -5.57 Total: -33.13 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: 1.82 Total: -1.13 kcal Atomic # 16 Polarization: 15.10 SS G_CDS: -1.61 Total: 13.48 kcal Total: -29.99 -9.33 -39.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567574_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.449 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds