Wall clock time and date at job start Mon Mar 8 2021 12:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 C 1.52997 * 109.47061 * 239.99804 * 2 1 3 5 5 O 1.45203 * 109.47240 * 119.99695 * 2 1 3 6 6 C 1.34229 * 116.99579 * 59.99972 * 5 2 1 7 7 O 1.20819 * 120.00199 * 0.02562 * 6 5 2 8 8 C 1.50706 * 119.99505 * 179.97438 * 6 5 2 9 9 H 1.08992 * 109.47518 * 300.00344 * 8 6 5 10 10 C 1.53002 * 109.46783 * 60.00307 * 8 6 5 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47452 * 300.00239 * 11 10 8 13 13 H 1.09002 * 109.46935 * 300.00125 * 12 11 10 14 14 N 1.46496 * 109.47414 * 180.02562 * 12 11 10 15 15 S 1.65600 * 120.00333 * 144.99709 * 14 12 11 16 16 O 1.42101 * 106.40392 * 178.53935 * 15 14 12 17 17 O 1.42100 * 106.40157 * 311.46025 * 15 14 12 18 18 C 1.76198 * 107.21753 * 64.99865 * 15 14 12 19 19 C 1.33395 * 125.20348 * 89.99741 * 18 15 14 20 20 C 1.50700 * 122.53683 * 359.96031 * 19 18 15 21 21 O 1.42905 * 109.46999 * 74.99909 * 20 19 18 22 22 Si 1.86298 * 109.46825 * 194.99693 * 20 19 18 23 23 C 1.38423 * 114.92082 * 179.97438 * 19 18 15 24 24 C 1.33385 * 114.92380 * 0.02562 * 23 19 18 25 25 S 1.75887 * 125.20455 * 269.69866 * 18 15 14 26 26 C 1.52999 * 109.47159 * 59.99536 * 12 11 10 27 27 C 1.52997 * 109.47317 * 300.00546 * 26 12 11 28 28 H 1.09000 * 109.47115 * 300.00085 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00296 * 1 2 3 30 30 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46973 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46790 * 300.00046 * 3 2 1 33 33 H 1.09000 * 109.47218 * 59.99978 * 3 2 1 34 34 H 1.09001 * 109.47231 * 299.99975 * 4 2 1 35 35 H 1.09005 * 109.46960 * 60.00056 * 4 2 1 36 36 H 1.09003 * 109.47003 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.47662 * 299.99813 * 10 8 6 38 38 H 1.09002 * 109.47075 * 60.00319 * 10 8 6 39 39 H 1.09002 * 109.47153 * 60.00231 * 11 10 8 40 40 H 1.09001 * 109.47289 * 180.02562 * 11 10 8 41 41 H 0.97000 * 119.99743 * 324.99971 * 14 12 11 42 42 H 1.08997 * 109.47294 * 314.99986 * 20 19 18 43 43 H 0.96700 * 114.00331 * 59.99630 * 21 20 19 44 44 H 1.48505 * 109.99760 * 180.02562 * 22 20 19 45 45 H 1.48499 * 109.99997 * 301.31723 * 22 20 19 46 46 H 1.08000 * 122.53658 * 179.97438 * 23 19 18 47 47 H 1.08003 * 125.20985 * 179.97438 * 24 23 19 48 48 H 1.08996 * 109.46929 * 179.97438 * 26 12 11 49 49 H 1.09002 * 109.46716 * 60.00455 * 26 12 11 50 50 H 1.09002 * 109.47153 * 299.99641 * 27 26 12 51 51 H 1.09001 * 109.46832 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1183 -2.7436 2.5437 9 1 3.2078 -2.7725 2.5592 10 6 1.6081 -2.0629 3.8154 11 6 2.0797 -2.8503 5.0396 12 6 1.5321 -4.2774 4.9701 13 1 0.4426 -4.2481 4.9544 14 7 1.9831 -5.0311 6.1425 15 16 0.9926 -6.1679 6.8274 16 8 1.7212 -6.7372 7.9064 17 8 -0.2770 -5.5499 6.9871 18 6 0.7750 -7.4526 5.6413 19 6 1.5514 -8.5310 5.5245 20 6 2.7375 -8.7768 6.4211 21 8 2.2821 -9.1973 7.7088 22 14 3.8126 -10.1046 5.6785 23 6 1.1853 -9.4070 4.5172 24 6 0.1119 -9.0398 3.8156 25 16 -0.5036 -7.5130 4.4350 26 6 2.0422 -4.9580 3.6983 27 6 1.5707 -4.1706 2.4742 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 1.9978 -1.0462 3.8648 38 1 0.5186 -2.0341 3.8000 39 1 3.1692 -2.8796 5.0552 40 1 1.7158 -2.3657 5.9456 41 1 2.8620 -4.8643 6.5176 42 1 3.3135 -7.8570 6.5220 43 1 1.7611 -10.0118 7.6951 44 1 4.9856 -10.3568 6.5536 45 1 3.0299 -11.3548 5.5064 46 1 1.7281 -10.3183 4.3142 47 1 -0.3163 -9.5968 2.9954 48 1 1.6526 -5.9747 3.6491 49 1 3.1318 -4.9872 3.7139 50 1 0.4812 -4.1413 2.4585 51 1 1.9346 -4.6553 1.5682 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17607846_13652106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:31:22 Heat of formation + Delta-G solvation = -158.601364 kcal Electronic energy + Delta-G solvation = -35981.367845 eV Core-core repulsion = 31294.179243 eV Total energy + Delta-G solvation = -4687.188602 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.125 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.00322 -40.12871 -39.97201 -38.08943 -37.87184 -37.07213 -36.73330 -35.55502 -34.85103 -32.02328 -31.44246 -30.47964 -28.37150 -28.36424 -27.98689 -25.20033 -24.38168 -23.93029 -22.65116 -21.61261 -21.18382 -20.47804 -19.99328 -19.46804 -18.43560 -18.36159 -18.19005 -17.65957 -17.40465 -16.91704 -16.58202 -16.26863 -15.93239 -15.87568 -15.55076 -15.54116 -15.31728 -15.25654 -14.99411 -14.64934 -14.42047 -14.26431 -14.12264 -14.01535 -13.52252 -13.50491 -13.45697 -13.25335 -13.14387 -12.98906 -12.96022 -12.92224 -12.88093 -12.70784 -12.57589 -12.49526 -12.47365 -12.37324 -12.28462 -12.18157 -11.98159 -11.80049 -11.57959 -11.52515 -11.34256 -10.82356 -10.64768 -10.61490 -10.41334 -9.66817 -5.06297 -0.81440 -0.51271 0.27837 0.62115 1.15218 1.17223 1.25861 1.50006 1.66891 1.90059 1.99308 2.73550 3.35198 3.37761 3.41781 3.46589 3.48895 3.59859 3.71877 3.75657 3.78944 3.90892 3.92637 3.94397 4.01024 4.06466 4.11828 4.19460 4.29532 4.31002 4.34914 4.52308 4.57501 4.60886 4.62749 4.63574 4.73346 4.74952 4.81323 4.85526 4.86314 4.90178 4.92690 4.97102 5.00304 5.02225 5.05518 5.13177 5.25484 5.27137 5.29543 5.60797 5.86496 6.44838 6.87500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.350 6.350 6 C 0.468 3.532 7 O -0.501 6.501 8 C -0.083 4.083 9 H 0.111 0.889 10 C -0.111 4.111 11 C -0.120 4.120 12 C 0.143 3.857 13 H 0.094 0.906 14 N -1.110 6.110 15 S 2.707 3.293 16 O -0.921 6.921 17 O -0.952 6.952 18 C -0.775 4.775 19 C 0.008 3.992 20 C -0.075 4.075 21 O -0.492 6.492 22 Si 0.691 3.309 23 C -0.168 4.168 24 C -0.163 4.163 25 S 0.227 5.773 26 C -0.143 4.143 27 C -0.102 4.102 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.421 0.579 42 H 0.121 0.879 43 H 0.369 0.631 44 H -0.251 1.251 45 H -0.257 1.257 46 H 0.154 0.846 47 H 0.178 0.822 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 1.186 -5.643 6.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.267 6.267 6 C 0.311 3.689 7 O -0.388 6.388 8 C -0.102 4.102 9 H 0.129 0.871 10 C -0.149 4.149 11 C -0.159 4.159 12 C 0.036 3.964 13 H 0.112 0.888 14 N -0.870 5.870 15 S 2.792 3.208 16 O -0.911 6.911 17 O -0.942 6.942 18 C -0.976 4.976 19 C -0.010 4.010 20 C -0.187 4.187 21 O -0.296 6.296 22 Si 0.591 3.409 23 C -0.198 4.198 24 C -0.301 4.301 25 S 0.495 5.505 26 C -0.182 4.182 27 C -0.140 4.140 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.256 0.744 42 H 0.139 0.861 43 H 0.215 0.785 44 H -0.175 1.175 45 H -0.181 1.181 46 H 0.171 0.829 47 H 0.195 0.805 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.681 1.734 -5.283 5.809 hybrid contribution 0.620 -1.658 0.262 1.790 sum 2.301 0.076 -5.022 5.524 Atomic orbital electron populations 1.22494 0.93894 1.04728 1.02957 1.22217 0.94463 0.92338 0.82887 1.21867 1.02290 0.92488 1.03263 1.22496 1.01709 1.03107 0.96758 1.86550 1.69664 1.25302 1.45185 1.23599 0.77361 0.80712 0.87278 1.90592 1.35015 1.69937 1.43262 1.21195 1.03162 0.94745 0.91112 0.87099 1.21526 1.01982 0.99761 0.91622 1.21787 1.01884 0.93492 0.98708 1.20985 0.99801 0.91815 0.83778 0.88804 1.55689 1.33123 1.54190 1.44000 1.01777 0.73908 0.72409 0.72738 1.93733 1.71949 1.77255 1.48194 1.93622 1.41161 1.75042 1.84387 1.35845 1.11810 1.23373 1.26562 1.19150 0.95671 0.91493 0.94655 1.25060 0.97202 1.09749 0.86662 1.86931 1.72841 1.45162 1.24700 0.95212 0.79961 0.77994 0.87751 1.20333 0.99482 1.02443 0.97571 1.26229 0.99597 1.00556 1.03758 1.84424 1.25211 1.17966 1.22923 1.22195 1.02616 0.99830 0.93536 1.21409 1.02142 0.92071 0.98399 0.91916 0.90922 0.89825 0.91405 0.90222 0.91378 0.89830 0.90913 0.91965 0.89631 0.90776 0.90386 0.90032 0.74400 0.86077 0.78500 1.17515 1.18127 0.82855 0.80480 0.90646 0.90259 0.90424 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.07 8.37 37.16 0.31 0.24 16 2 C 0.12 0.03 1.13 -90.62 -0.10 -0.07 16 3 C -0.14 0.19 8.85 37.16 0.33 0.52 16 4 C -0.18 -0.05 8.37 37.16 0.31 0.26 16 5 O -0.35 -0.30 9.79 -39.25 -0.38 -0.68 16 6 C 0.47 0.30 6.56 36.01 0.24 0.54 16 7 O -0.50 -1.39 11.48 -18.74 -0.22 -1.61 16 8 C -0.08 0.18 2.63 -91.77 -0.24 -0.06 16 9 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 10 C -0.11 0.30 5.14 -26.73 -0.14 0.17 16 11 C -0.12 0.40 5.45 -26.73 -0.15 0.25 16 12 C 0.14 -0.33 2.79 -67.93 -0.19 -0.51 16 13 H 0.09 -0.13 7.50 -51.93 -0.39 -0.52 16 14 N -1.11 1.96 5.47 -4.89 -0.03 1.94 16 15 S 2.71 5.27 5.64 -107.50 -0.61 4.66 16 16 O -0.92 -4.22 14.29 -66.03 -0.94 -5.17 16 17 O -0.95 -4.80 17.24 -57.17 -0.99 -5.79 16 18 C -0.78 -0.49 5.54 29.04 0.16 -0.33 16 19 C 0.01 0.00 5.13 -106.25 -0.55 -0.55 16 20 C -0.07 0.00 1.79 36.01 0.06 0.06 16 21 O -0.49 -1.21 11.12 -56.67 -0.63 -1.84 16 22 Si 0.69 -1.10 30.46 -169.99 -5.18 -6.28 16 23 C -0.17 0.28 8.74 -41.21 -0.36 -0.08 16 24 C -0.16 0.34 11.23 29.04 0.33 0.67 16 25 S 0.23 -0.10 22.34 -107.50 -2.40 -2.50 16 26 C -0.14 0.46 5.53 -26.73 -0.15 0.31 16 27 C -0.10 0.23 4.49 -26.73 -0.12 0.11 16 28 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.08 0.17 5.89 -51.93 -0.31 -0.13 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 34 H 0.08 0.16 5.89 -51.93 -0.31 -0.14 16 35 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.09 -0.24 8.11 -51.93 -0.42 -0.67 16 38 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 39 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 40 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 41 H 0.42 -1.64 8.84 -34.47 -0.30 -1.94 16 42 H 0.12 -0.10 7.16 -51.93 -0.37 -0.47 16 43 H 0.37 -0.33 8.70 45.56 0.40 0.07 16 44 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 45 H -0.26 0.05 6.80 56.52 0.38 0.44 16 46 H 0.15 -0.49 5.53 -52.49 -0.29 -0.78 16 47 H 0.18 -0.81 8.06 -52.48 -0.42 -1.23 16 48 H 0.07 -0.23 6.13 -51.93 -0.32 -0.55 16 49 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 50 H 0.08 -0.11 8.10 -51.93 -0.42 -0.53 16 51 H 0.08 -0.15 8.10 -51.93 -0.42 -0.57 16 LS Contribution 419.20 15.07 6.32 6.32 Total: 0.00 -10.37 419.20 -13.17 -23.54 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: -7.86 Total: -14.11 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.25 Total: 1.52 kcal Atomic # 7 Polarization: 1.96 SS G_CDS: -0.03 Total: 1.94 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -3.16 Total: -15.09 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.18 Total: -6.28 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -3.01 Total: 2.17 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -10.37 -13.17 -23.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17607846_13652106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.063 kcal (2) G-P(sol) polarization free energy of solvation -10.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds