Wall clock time and date at job start Mon Mar 8 2021 12:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 C 1.52997 * 109.47061 * 239.99804 * 2 1 3 5 5 O 1.45203 * 109.47240 * 119.99695 * 2 1 3 6 6 C 1.34229 * 116.99579 * 59.99972 * 5 2 1 7 7 O 1.20819 * 120.00199 * 0.02562 * 6 5 2 8 8 C 1.50706 * 119.99505 * 179.97438 * 6 5 2 9 9 H 1.08992 * 109.47518 * 300.00344 * 8 6 5 10 10 C 1.53002 * 109.46783 * 60.00307 * 8 6 5 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47452 * 300.00239 * 11 10 8 13 13 H 1.09002 * 109.46935 * 300.00125 * 12 11 10 14 14 N 1.46496 * 109.47414 * 180.02562 * 12 11 10 15 15 S 1.65600 * 120.00333 * 144.99709 * 14 12 11 16 16 O 1.42101 * 106.40392 * 178.53935 * 15 14 12 17 17 O 1.42100 * 106.40157 * 311.46025 * 15 14 12 18 18 C 1.76198 * 107.21753 * 64.99865 * 15 14 12 19 19 C 1.33395 * 125.20348 * 89.99741 * 18 15 14 20 20 C 1.50700 * 122.53683 * 359.96031 * 19 18 15 21 21 O 1.42905 * 109.46999 * 74.99909 * 20 19 18 22 22 Si 1.86298 * 109.46825 * 194.99693 * 20 19 18 23 23 C 1.38423 * 114.92082 * 179.97438 * 19 18 15 24 24 C 1.33385 * 114.92380 * 0.02562 * 23 19 18 25 25 S 1.75887 * 125.20455 * 269.69866 * 18 15 14 26 26 C 1.52999 * 109.47159 * 59.99536 * 12 11 10 27 27 C 1.52997 * 109.47317 * 300.00546 * 26 12 11 28 28 H 1.09000 * 109.47115 * 300.00085 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00296 * 1 2 3 30 30 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46973 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46790 * 300.00046 * 3 2 1 33 33 H 1.09000 * 109.47218 * 59.99978 * 3 2 1 34 34 H 1.09001 * 109.47231 * 299.99975 * 4 2 1 35 35 H 1.09005 * 109.46960 * 60.00056 * 4 2 1 36 36 H 1.09003 * 109.47003 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.47662 * 299.99813 * 10 8 6 38 38 H 1.09002 * 109.47075 * 60.00319 * 10 8 6 39 39 H 1.09002 * 109.47153 * 60.00231 * 11 10 8 40 40 H 1.09001 * 109.47289 * 180.02562 * 11 10 8 41 41 H 0.97000 * 119.99743 * 324.99971 * 14 12 11 42 42 H 1.08997 * 109.47294 * 314.99986 * 20 19 18 43 43 H 0.96700 * 114.00331 * 59.99630 * 21 20 19 44 44 H 1.48505 * 109.99760 * 180.02562 * 22 20 19 45 45 H 1.48499 * 109.99997 * 301.31723 * 22 20 19 46 46 H 1.08000 * 122.53658 * 179.97438 * 23 19 18 47 47 H 1.08003 * 125.20985 * 179.97438 * 24 23 19 48 48 H 1.08996 * 109.46929 * 179.97438 * 26 12 11 49 49 H 1.09002 * 109.46716 * 60.00455 * 26 12 11 50 50 H 1.09002 * 109.47153 * 299.99641 * 27 26 12 51 51 H 1.09001 * 109.46832 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1183 -2.7436 2.5437 9 1 3.2078 -2.7725 2.5592 10 6 1.6081 -2.0629 3.8154 11 6 2.0797 -2.8503 5.0396 12 6 1.5321 -4.2774 4.9701 13 1 0.4426 -4.2481 4.9544 14 7 1.9831 -5.0311 6.1425 15 16 0.9926 -6.1679 6.8274 16 8 1.7212 -6.7372 7.9064 17 8 -0.2770 -5.5499 6.9871 18 6 0.7750 -7.4526 5.6413 19 6 1.5514 -8.5310 5.5245 20 6 2.7375 -8.7768 6.4211 21 8 2.2821 -9.1973 7.7088 22 14 3.8126 -10.1046 5.6785 23 6 1.1853 -9.4070 4.5172 24 6 0.1119 -9.0398 3.8156 25 16 -0.5036 -7.5130 4.4350 26 6 2.0422 -4.9580 3.6983 27 6 1.5707 -4.1706 2.4742 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 1.9978 -1.0462 3.8648 38 1 0.5186 -2.0341 3.8000 39 1 3.1692 -2.8796 5.0552 40 1 1.7158 -2.3657 5.9456 41 1 2.8620 -4.8643 6.5176 42 1 3.3135 -7.8570 6.5220 43 1 1.7611 -10.0118 7.6951 44 1 4.9856 -10.3568 6.5536 45 1 3.0299 -11.3548 5.5064 46 1 1.7281 -10.3183 4.3142 47 1 -0.3163 -9.5968 2.9954 48 1 1.6526 -5.9747 3.6491 49 1 3.1318 -4.9872 3.7139 50 1 0.4812 -4.1413 2.4585 51 1 1.9346 -4.6553 1.5682 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17607846_13652106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:31:20 Heat of formation + Delta-G solvation = -158.761473 kcal Electronic energy + Delta-G solvation = -35981.374788 eV Core-core repulsion = 31294.179243 eV Total energy + Delta-G solvation = -4687.195545 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.125 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.01171 -40.08526 -39.84622 -38.28551 -37.93107 -37.13685 -36.95535 -35.51164 -34.82513 -31.82626 -31.36300 -30.36516 -28.39268 -28.30787 -27.98006 -25.14095 -24.29264 -23.73337 -22.56133 -21.59583 -21.06162 -20.47970 -20.00470 -19.44468 -18.51540 -18.38083 -18.18349 -17.62895 -17.40294 -16.93464 -16.58217 -16.28185 -16.00949 -15.82030 -15.51873 -15.47056 -15.21749 -15.16024 -14.94665 -14.62082 -14.32485 -14.21412 -14.04536 -13.91336 -13.52214 -13.45407 -13.36568 -13.25793 -13.20473 -13.13201 -13.09450 -12.92487 -12.86123 -12.78065 -12.51580 -12.46335 -12.44689 -12.31558 -12.21209 -12.08185 -11.92807 -11.65147 -11.51813 -11.39621 -11.32894 -10.84747 -10.61999 -10.52329 -10.32815 -9.61571 -4.94531 -0.81105 -0.55307 0.31621 0.73168 1.23711 1.23902 1.27713 1.59363 1.71685 1.97501 1.98185 2.63492 3.37965 3.42818 3.48790 3.57640 3.63754 3.68510 3.73846 3.79044 3.93044 3.94934 4.06910 4.10066 4.16326 4.21263 4.27758 4.39292 4.43876 4.44789 4.53366 4.57585 4.58436 4.74580 4.74871 4.80164 4.83480 4.83969 4.86710 4.92274 4.92748 5.08014 5.11642 5.13227 5.14604 5.19305 5.20895 5.23865 5.28251 5.33975 5.46071 5.61790 6.07387 6.52802 6.84989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.354 6.354 6 C 0.464 3.536 7 O -0.526 6.526 8 C -0.079 4.079 9 H 0.133 0.867 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.139 3.861 13 H 0.079 0.921 14 N -1.096 6.096 15 S 2.716 3.284 16 O -0.954 6.954 17 O -0.992 6.992 18 C -0.790 4.790 19 C 0.016 3.984 20 C -0.098 4.098 21 O -0.521 6.521 22 Si 0.787 3.213 23 C -0.175 4.175 24 C -0.146 4.146 25 S 0.206 5.794 26 C -0.137 4.137 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.432 0.568 42 H 0.124 0.876 43 H 0.379 0.621 44 H -0.300 1.300 45 H -0.268 1.268 46 H 0.175 0.825 47 H 0.207 0.793 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.062 0.938 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 0.893 -6.909 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.073 3.927 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.271 6.271 6 C 0.308 3.692 7 O -0.416 6.416 8 C -0.097 4.097 9 H 0.150 0.850 10 C -0.145 4.145 11 C -0.155 4.155 12 C 0.032 3.968 13 H 0.097 0.903 14 N -0.859 5.859 15 S 2.804 3.196 16 O -0.944 6.944 17 O -0.982 6.982 18 C -0.993 4.993 19 C -0.003 4.003 20 C -0.208 4.208 21 O -0.328 6.328 22 Si 0.690 3.310 23 C -0.204 4.204 24 C -0.283 4.283 25 S 0.473 5.527 26 C -0.176 4.176 27 C -0.136 4.136 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.270 0.730 42 H 0.142 0.858 43 H 0.227 0.773 44 H -0.228 1.228 45 H -0.194 1.194 46 H 0.192 0.808 47 H 0.224 0.776 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.081 0.919 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.860 1.481 -6.528 7.279 hybrid contribution 0.240 -1.570 0.624 1.706 sum 3.100 -0.088 -5.904 6.669 Atomic orbital electron populations 1.22461 0.94251 1.03561 1.03540 1.22383 0.94325 0.93256 0.82765 1.21874 1.02445 0.91328 1.03945 1.22459 1.01856 1.02107 0.97327 1.86555 1.69655 1.25477 1.45450 1.24167 0.76749 0.80634 0.87645 1.90587 1.36195 1.70373 1.44411 1.21282 1.04307 0.94184 0.89968 0.84955 1.21492 1.01359 1.00094 0.91559 1.21783 1.03140 0.92349 0.98203 1.21087 0.99262 0.92562 0.83847 0.90268 1.55342 1.33176 1.53321 1.44084 1.01024 0.73190 0.72616 0.72766 1.93688 1.72333 1.78022 1.50378 1.93570 1.43220 1.76033 1.85377 1.35515 1.13038 1.23613 1.27124 1.19249 0.95152 0.91267 0.94599 1.25508 0.97876 1.11225 0.86172 1.86891 1.73379 1.46148 1.26343 0.94173 0.75841 0.75449 0.85562 1.20506 0.99874 1.02850 0.97134 1.26579 0.98789 0.99226 1.03741 1.84555 1.25449 1.19674 1.23065 1.22165 1.03799 0.99411 0.92259 1.21354 1.01289 0.92247 0.98743 0.91824 0.89841 0.91804 0.91125 0.88999 0.91265 0.91723 0.89867 0.91615 0.89108 0.91904 0.88233 0.90278 0.72998 0.85823 0.77318 1.22811 1.19384 0.80844 0.77630 0.90663 0.88211 0.91883 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.26 8.37 71.98 0.60 0.34 16 2 C 0.11 0.08 1.13 -10.79 -0.01 0.07 16 3 C -0.14 0.45 8.85 71.98 0.64 1.08 16 4 C -0.18 -0.16 8.37 71.98 0.60 0.45 16 5 O -0.35 -0.70 9.79 -51.40 -0.50 -1.20 16 6 C 0.46 0.89 6.56 71.24 0.47 1.36 16 7 O -0.53 -3.68 11.48 21.99 0.25 -3.43 16 8 C -0.08 0.35 2.63 -11.54 -0.03 0.32 16 9 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 10 C -0.11 0.58 5.14 30.59 0.16 0.74 16 11 C -0.12 0.82 5.45 30.60 0.17 0.98 16 12 C 0.14 -0.59 2.79 44.99 0.13 -0.46 16 13 H 0.08 -0.08 7.50 -2.39 -0.02 -0.10 16 14 N -1.10 3.31 5.47 -169.39 -0.93 2.38 16 15 S 2.72 14.69 5.64 -56.49 -0.32 14.37 16 16 O -0.95 -10.41 14.29 -119.53 -1.71 -12.12 16 17 O -0.99 -12.29 17.24 -128.00 -2.21 -14.50 16 18 C -0.79 -1.48 5.54 66.72 0.37 -1.11 16 19 C 0.02 -0.01 5.13 -20.92 -0.11 -0.12 16 20 C -0.10 -0.02 1.79 71.24 0.13 0.11 16 21 O -0.52 -3.05 11.12 -128.48 -1.43 -4.47 16 22 Si 0.79 -3.13 30.46 68.60 2.09 -1.04 16 23 C -0.17 0.85 8.74 21.22 0.19 1.04 16 24 C -0.15 0.83 11.23 66.72 0.75 1.58 16 25 S 0.21 -0.10 22.34 -56.49 -1.26 -1.36 16 26 C -0.14 0.93 5.53 30.59 0.17 1.10 16 27 C -0.10 0.41 4.49 30.59 0.14 0.55 16 28 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 0.37 5.89 -2.39 -0.01 0.36 16 31 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.06 0.33 5.89 -2.39 -0.01 0.32 16 35 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 36 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.09 -0.56 8.11 -2.39 -0.02 -0.57 16 38 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 40 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.43 -3.37 8.84 -96.75 -0.85 -4.23 16 42 H 0.12 -0.15 7.16 -2.39 -0.02 -0.16 16 43 H 0.38 -0.35 8.70 -74.06 -0.64 -1.00 16 44 H -0.30 -1.28 7.11 99.48 0.71 -0.57 16 45 H -0.27 0.57 6.80 99.48 0.68 1.25 16 46 H 0.17 -1.55 5.53 -2.91 -0.02 -1.57 16 47 H 0.21 -2.43 8.06 -2.91 -0.02 -2.45 16 48 H 0.07 -0.47 6.13 -2.39 -0.01 -0.48 16 49 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 50 H 0.06 -0.08 8.10 -2.39 -0.02 -0.10 16 51 H 0.08 -0.28 8.10 -2.39 -0.02 -0.30 16 Total: 0.00 -26.16 419.20 -2.19 -28.35 By element: Atomic # 1 Polarization: -14.48 SS G_CDS: -0.52 Total: -15.00 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 4.35 Total: 8.03 kcal Atomic # 7 Polarization: 3.31 SS G_CDS: -0.93 Total: 2.38 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -5.60 Total: -35.72 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: 2.09 Total: -1.04 kcal Atomic # 16 Polarization: 14.59 SS G_CDS: -1.58 Total: 13.01 kcal Total: -26.16 -2.19 -28.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17607846_13652106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.415 kcal (2) G-P(sol) polarization free energy of solvation -26.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds