Wall clock time and date at job start Mon Mar 8 2021 12:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.53007 * 109.46687 * 240.00388 * 2 1 3 5 5 O 1.45199 * 109.47050 * 120.00668 * 2 1 3 6 6 C 1.34227 * 117.00258 * 59.99611 * 5 2 1 7 7 O 1.20822 * 120.00210 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00226 * 180.02562 * 6 5 2 9 9 H 1.08997 * 109.47124 * 59.99722 * 8 6 5 10 10 C 1.52996 * 109.47309 * 180.02562 * 8 6 5 11 11 C 1.53005 * 109.46997 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.47186 * 299.99512 * 11 10 8 13 13 H 1.08998 * 109.47244 * 300.00601 * 12 11 10 14 14 N 1.46500 * 109.47463 * 179.97438 * 12 11 10 15 15 S 1.65597 * 120.00219 * 144.82478 * 14 12 11 16 16 O 1.42104 * 106.40290 * 312.45767 * 15 14 12 17 17 O 1.42098 * 106.40488 * 179.53080 * 15 14 12 18 18 C 1.76199 * 107.21634 * 65.99170 * 15 14 12 19 19 C 1.33392 * 122.53744 * 67.14715 * 18 15 14 20 20 C 1.50693 * 125.20392 * 0.02562 * 19 18 15 21 21 O 1.42901 * 109.47683 * 315.26290 * 20 19 18 22 22 Si 1.86304 * 109.47341 * 195.26011 * 20 19 18 23 23 S 1.75892 * 109.59091 * 179.73574 * 19 18 15 24 24 C 1.75885 * 90.96946 * 0.30983 * 23 19 18 25 25 C 1.33387 * 109.59580 * 359.68941 * 24 23 19 26 26 C 1.53001 * 109.47086 * 59.99951 * 12 11 10 27 27 C 1.52997 * 109.47499 * 300.00355 * 26 12 11 28 28 H 1.08998 * 109.47195 * 299.99619 * 1 2 3 29 29 H 1.09004 * 109.47821 * 59.99495 * 1 2 3 30 30 H 1.09008 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47158 * 300.00318 * 3 2 1 33 33 H 1.09002 * 109.46735 * 60.00594 * 3 2 1 34 34 H 1.09008 * 109.46905 * 299.99894 * 4 2 1 35 35 H 1.08995 * 109.47378 * 59.99913 * 4 2 1 36 36 H 1.09000 * 109.46856 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47551 * 59.99620 * 10 8 6 38 38 H 1.09001 * 109.46986 * 299.99385 * 10 8 6 39 39 H 1.08997 * 109.46900 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.47219 * 59.99492 * 11 10 8 41 41 H 0.97000 * 119.99720 * 324.83401 * 14 12 11 42 42 H 1.09003 * 109.46982 * 75.26385 * 20 19 18 43 43 H 0.96704 * 113.99659 * 294.00880 * 21 20 19 44 44 H 1.48499 * 110.00071 * 58.68314 * 22 20 19 45 45 H 1.48498 * 110.00091 * 180.02562 * 22 20 19 46 46 H 1.08001 * 125.19534 * 179.97438 * 24 23 19 47 47 H 1.07994 * 122.54173 * 180.22204 * 25 24 23 48 48 H 1.09007 * 109.47109 * 59.99967 * 26 12 11 49 49 H 1.09002 * 109.47643 * 179.97438 * 26 12 11 50 50 H 1.09007 * 109.46623 * 299.99910 * 27 26 12 51 51 H 1.08995 * 109.47750 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0139 -0.6846 1.1855 6 6 1.6532 -1.9685 1.3377 7 8 0.9565 -2.5028 0.5077 8 6 2.1172 -2.7436 2.5439 9 1 1.7531 -2.2586 3.4496 10 6 1.5707 -4.1710 2.4741 11 6 2.0424 -4.9581 3.6985 12 6 3.5716 -4.9981 3.7210 13 1 3.9358 -5.4827 2.8151 14 7 4.0233 -5.7512 4.8936 15 16 5.3818 -6.6934 4.7997 16 8 5.2566 -7.4608 3.6103 17 8 5.5569 -7.2744 6.0847 18 6 6.7506 -5.6118 4.5521 19 6 7.1624 -4.7509 5.4841 20 6 6.5390 -4.5801 6.8453 21 8 5.1161 -4.5464 6.7169 22 14 7.1319 -2.9854 7.6044 23 16 8.5497 -3.8513 4.8841 24 6 8.4847 -4.7141 3.3528 25 6 7.4803 -5.5915 3.3760 26 6 4.1182 -3.5708 3.7907 27 6 3.6466 -2.7836 2.5665 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6765 -1.7489 -1.2494 35 1 1.6765 -0.2074 -2.1393 36 1 3.1299 -0.7216 -1.2492 37 1 1.9352 -4.6558 1.5685 38 1 0.4812 -4.1425 2.4577 39 1 1.6527 -5.9748 3.6490 40 1 1.6783 -4.4734 4.6044 41 1 3.5265 -5.6980 5.7250 42 1 6.8264 -5.4154 7.4839 43 1 4.7827 -3.7756 6.2374 44 1 6.7741 -1.8416 6.7275 45 1 6.5246 -2.8056 8.9475 46 1 9.1581 -4.5604 2.5226 47 1 7.2533 -6.2370 2.5404 48 1 3.7540 -3.0861 4.6966 49 1 5.2077 -3.5992 3.8072 50 1 4.0108 -3.2683 1.6606 51 1 4.0356 -1.7666 2.6163 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17607846_14772022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:31:27 Heat of formation + Delta-G solvation = -157.945829 kcal Electronic energy + Delta-G solvation = -36752.401448 eV Core-core repulsion = 32065.241272 eV Total energy + Delta-G solvation = -4687.160176 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.125 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.03389 -40.17562 -39.61188 -38.25279 -37.97550 -37.48835 -36.67730 -35.48942 -34.83916 -32.03325 -31.90305 -30.43894 -28.40111 -28.38865 -27.55862 -25.20999 -24.45020 -23.98934 -22.64065 -21.80879 -21.29676 -20.50244 -19.94710 -19.32634 -18.61627 -18.27454 -18.20662 -17.55089 -17.31248 -17.16588 -16.96604 -16.58567 -15.97848 -15.77789 -15.53593 -15.46468 -15.43845 -15.10751 -14.92486 -14.71474 -14.43166 -14.29549 -14.13477 -14.02041 -13.94424 -13.53232 -13.43686 -13.30812 -13.19540 -13.00406 -12.95212 -12.91515 -12.89355 -12.80648 -12.63782 -12.56587 -12.45987 -12.35523 -12.31506 -12.27015 -12.04694 -11.81938 -11.58536 -11.53590 -11.37200 -11.22833 -10.85177 -10.45716 -10.16580 -9.82545 -5.30703 -0.63410 -0.46336 0.30087 0.56770 0.94115 1.10647 1.23093 1.36346 1.63978 1.67948 2.10339 2.78602 3.01707 3.20193 3.35061 3.41450 3.47531 3.55922 3.69213 3.73649 3.80378 3.88260 3.90490 3.94800 4.03052 4.11242 4.15784 4.18401 4.25123 4.31733 4.38118 4.49406 4.54922 4.55522 4.61183 4.68861 4.70441 4.71693 4.79090 4.83029 4.83598 4.87673 4.88041 5.00041 5.01615 5.02724 5.09595 5.10157 5.24578 5.25311 5.27253 5.58007 5.95349 6.08752 6.84882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.350 6.350 6 C 0.467 3.533 7 O -0.499 6.499 8 C -0.082 4.082 9 H 0.110 0.890 10 C -0.103 4.103 11 C -0.120 4.120 12 C 0.145 3.855 13 H 0.097 0.903 14 N -1.099 6.099 15 S 2.716 3.284 16 O -0.960 6.960 17 O -0.947 6.947 18 C -0.665 4.665 19 C -0.098 4.098 20 C -0.068 4.068 21 O -0.518 6.518 22 Si 0.670 3.330 23 S 0.155 5.845 24 C -0.210 4.210 25 C -0.076 4.076 26 C -0.142 4.142 27 C -0.108 4.108 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.424 0.576 42 H 0.153 0.847 43 H 0.376 0.624 44 H -0.239 1.239 45 H -0.228 1.228 46 H 0.175 0.825 47 H 0.158 0.842 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 6.448 0.612 6.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.268 6.268 6 C 0.310 3.690 7 O -0.386 6.386 8 C -0.101 4.101 9 H 0.128 0.872 10 C -0.142 4.142 11 C -0.159 4.159 12 C 0.038 3.962 13 H 0.115 0.885 14 N -0.861 5.861 15 S 2.802 3.198 16 O -0.951 6.951 17 O -0.937 6.937 18 C -0.765 4.765 19 C -0.219 4.219 20 C -0.179 4.179 21 O -0.326 6.326 22 Si 0.566 3.434 23 S 0.418 5.582 24 C -0.345 4.345 25 C -0.104 4.104 26 C -0.181 4.181 27 C -0.146 4.146 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.262 0.738 42 H 0.170 0.830 43 H 0.226 0.774 44 H -0.162 1.162 45 H -0.151 1.151 46 H 0.192 0.808 47 H 0.175 0.825 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.190 6.794 1.437 7.642 hybrid contribution -1.566 -0.161 -1.189 1.973 sum 1.624 6.633 0.248 6.833 Atomic orbital electron populations 1.22499 0.93912 1.04748 1.02949 1.22214 0.94451 0.92312 0.82907 1.21866 1.02268 0.92508 1.03256 1.22498 1.01706 1.03147 0.96732 1.86542 1.69708 1.25296 1.45247 1.23594 0.77314 0.80672 0.87453 1.90601 1.35030 1.69944 1.43055 1.21188 0.97873 0.95959 0.95128 0.87228 1.21443 1.01794 0.91940 0.98997 1.21797 0.93590 1.01843 0.98705 1.20915 0.95884 0.91270 0.88128 0.88523 1.55654 1.43740 1.66035 1.20652 1.01390 0.72464 0.72598 0.73387 1.93589 1.85864 1.66141 1.49456 1.93595 1.85408 1.74297 1.40448 1.29970 1.25109 1.19531 1.01850 1.24998 0.99690 0.97856 0.99376 1.24931 0.83561 1.15275 0.94171 1.86685 1.18055 1.48729 1.79143 0.94838 0.91643 0.74379 0.82532 1.84260 1.27361 1.37718 1.08814 1.25911 1.04491 1.02831 1.01310 1.19763 0.94483 0.99262 0.96892 1.22203 1.01472 0.95710 0.98740 1.21477 0.92254 1.01852 0.99045 0.91973 0.90868 0.89810 0.91425 0.90186 0.91425 0.89796 0.90880 0.91964 0.90319 0.90151 0.89932 0.90682 0.73800 0.83018 0.77380 1.16206 1.15085 0.80781 0.82495 0.90785 0.90837 0.90742 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.11 8.37 37.16 0.31 0.21 16 2 C 0.12 0.05 1.13 -90.62 -0.10 -0.05 16 3 C -0.14 0.17 8.85 37.15 0.33 0.50 16 4 C -0.18 -0.10 8.37 37.16 0.31 0.21 16 5 O -0.35 -0.36 9.79 -39.25 -0.38 -0.74 16 6 C 0.47 0.44 6.56 36.01 0.24 0.67 16 7 O -0.50 -1.62 11.48 -18.75 -0.22 -1.83 16 8 C -0.08 0.16 2.63 -91.77 -0.24 -0.08 16 9 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 10 C -0.10 0.18 4.49 -26.73 -0.12 0.06 16 11 C -0.12 0.34 5.45 -26.73 -0.15 0.19 16 12 C 0.15 -0.34 2.80 -67.93 -0.19 -0.53 16 13 H 0.10 -0.14 7.47 -51.93 -0.39 -0.53 16 14 N -1.10 1.61 3.59 -4.89 -0.02 1.59 16 15 S 2.72 5.35 4.92 -107.50 -0.53 4.83 16 16 O -0.96 -4.66 16.64 -57.17 -0.95 -5.61 16 17 O -0.95 -4.60 16.61 -62.21 -1.03 -5.63 16 18 C -0.67 -0.28 4.72 -41.21 -0.19 -0.48 16 19 C -0.10 0.08 5.57 -36.01 -0.20 -0.12 16 20 C -0.07 0.10 2.11 36.00 0.08 0.18 16 21 O -0.52 0.95 8.37 -43.96 -0.37 0.58 16 22 Si 0.67 -1.76 31.00 -169.99 -5.27 -7.03 16 23 S 0.15 -0.30 20.74 -107.50 -2.23 -2.53 16 24 C -0.21 0.30 11.23 29.04 0.33 0.62 16 25 C -0.08 0.00 9.70 -41.21 -0.40 -0.40 16 26 C -0.14 0.51 4.61 -26.73 -0.12 0.39 16 27 C -0.11 0.30 5.13 -26.73 -0.14 0.16 16 28 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.08 0.20 5.89 -51.92 -0.31 -0.11 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.08 0.20 5.89 -51.92 -0.31 -0.11 16 35 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.08 -0.05 8.10 -51.93 -0.42 -0.47 16 38 H 0.08 -0.09 8.10 -51.93 -0.42 -0.51 16 39 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 40 H 0.07 -0.30 8.14 -51.93 -0.42 -0.73 16 41 H 0.42 -1.15 7.65 -34.47 -0.26 -1.41 16 42 H 0.15 -0.19 7.82 -51.93 -0.41 -0.59 16 43 H 0.38 -1.67 6.12 45.56 0.28 -1.39 16 44 H -0.24 0.35 7.11 56.52 0.40 0.75 16 45 H -0.23 0.03 7.11 56.52 0.40 0.44 16 46 H 0.17 -0.61 8.06 -52.49 -0.42 -1.03 16 47 H 0.16 -0.06 7.74 -52.49 -0.41 -0.47 16 48 H 0.07 -0.38 6.99 -51.93 -0.36 -0.74 16 49 H 0.07 -0.25 6.81 -51.93 -0.35 -0.60 16 50 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 51 H 0.08 -0.23 8.11 -51.93 -0.42 -0.65 16 LS Contribution 413.39 15.07 6.23 6.23 Total: 0.00 -9.04 413.39 -13.08 -22.12 By element: Atomic # 1 Polarization: -5.46 SS G_CDS: -8.05 Total: -13.51 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.27 Total: 1.55 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -0.02 Total: 1.59 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -2.95 Total: -13.24 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: -5.27 Total: -7.03 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -2.76 Total: 2.29 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -9.04 -13.08 -22.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17607846_14772022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.824 kcal (2) G-P(sol) polarization free energy of solvation -9.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds