Wall clock time and date at job start Mon Mar 8 2021 12:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.53007 * 109.46687 * 240.00388 * 2 1 3 5 5 O 1.45199 * 109.47050 * 120.00668 * 2 1 3 6 6 C 1.34227 * 117.00258 * 59.99611 * 5 2 1 7 7 O 1.20822 * 120.00210 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00226 * 180.02562 * 6 5 2 9 9 H 1.08997 * 109.47124 * 59.99722 * 8 6 5 10 10 C 1.52996 * 109.47309 * 180.02562 * 8 6 5 11 11 C 1.53005 * 109.46997 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.47186 * 299.99512 * 11 10 8 13 13 H 1.08998 * 109.47244 * 300.00601 * 12 11 10 14 14 N 1.46500 * 109.47463 * 179.97438 * 12 11 10 15 15 S 1.65597 * 120.00219 * 144.82478 * 14 12 11 16 16 O 1.42104 * 106.40290 * 312.45767 * 15 14 12 17 17 O 1.42098 * 106.40488 * 179.53080 * 15 14 12 18 18 C 1.76199 * 107.21634 * 65.99170 * 15 14 12 19 19 C 1.33392 * 122.53744 * 67.14715 * 18 15 14 20 20 C 1.50693 * 125.20392 * 0.02562 * 19 18 15 21 21 O 1.42901 * 109.47683 * 315.26290 * 20 19 18 22 22 Si 1.86304 * 109.47341 * 195.26011 * 20 19 18 23 23 S 1.75892 * 109.59091 * 179.73574 * 19 18 15 24 24 C 1.75885 * 90.96946 * 0.30983 * 23 19 18 25 25 C 1.33387 * 109.59580 * 359.68941 * 24 23 19 26 26 C 1.53001 * 109.47086 * 59.99951 * 12 11 10 27 27 C 1.52997 * 109.47499 * 300.00355 * 26 12 11 28 28 H 1.08998 * 109.47195 * 299.99619 * 1 2 3 29 29 H 1.09004 * 109.47821 * 59.99495 * 1 2 3 30 30 H 1.09008 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47158 * 300.00318 * 3 2 1 33 33 H 1.09002 * 109.46735 * 60.00594 * 3 2 1 34 34 H 1.09008 * 109.46905 * 299.99894 * 4 2 1 35 35 H 1.08995 * 109.47378 * 59.99913 * 4 2 1 36 36 H 1.09000 * 109.46856 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47551 * 59.99620 * 10 8 6 38 38 H 1.09001 * 109.46986 * 299.99385 * 10 8 6 39 39 H 1.08997 * 109.46900 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.47219 * 59.99492 * 11 10 8 41 41 H 0.97000 * 119.99720 * 324.83401 * 14 12 11 42 42 H 1.09003 * 109.46982 * 75.26385 * 20 19 18 43 43 H 0.96704 * 113.99659 * 294.00880 * 21 20 19 44 44 H 1.48499 * 110.00071 * 58.68314 * 22 20 19 45 45 H 1.48498 * 110.00091 * 180.02562 * 22 20 19 46 46 H 1.08001 * 125.19534 * 179.97438 * 24 23 19 47 47 H 1.07994 * 122.54173 * 180.22204 * 25 24 23 48 48 H 1.09007 * 109.47109 * 59.99967 * 26 12 11 49 49 H 1.09002 * 109.47643 * 179.97438 * 26 12 11 50 50 H 1.09007 * 109.46623 * 299.99910 * 27 26 12 51 51 H 1.08995 * 109.47750 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0139 -0.6846 1.1855 6 6 1.6532 -1.9685 1.3377 7 8 0.9565 -2.5028 0.5077 8 6 2.1172 -2.7436 2.5439 9 1 1.7531 -2.2586 3.4496 10 6 1.5707 -4.1710 2.4741 11 6 2.0424 -4.9581 3.6985 12 6 3.5716 -4.9981 3.7210 13 1 3.9358 -5.4827 2.8151 14 7 4.0233 -5.7512 4.8936 15 16 5.3818 -6.6934 4.7997 16 8 5.2566 -7.4608 3.6103 17 8 5.5569 -7.2744 6.0847 18 6 6.7506 -5.6118 4.5521 19 6 7.1624 -4.7509 5.4841 20 6 6.5390 -4.5801 6.8453 21 8 5.1161 -4.5464 6.7169 22 14 7.1319 -2.9854 7.6044 23 16 8.5497 -3.8513 4.8841 24 6 8.4847 -4.7141 3.3528 25 6 7.4803 -5.5915 3.3760 26 6 4.1182 -3.5708 3.7907 27 6 3.6466 -2.7836 2.5665 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6765 -1.7489 -1.2494 35 1 1.6765 -0.2074 -2.1393 36 1 3.1299 -0.7216 -1.2492 37 1 1.9352 -4.6558 1.5685 38 1 0.4812 -4.1425 2.4577 39 1 1.6527 -5.9748 3.6490 40 1 1.6783 -4.4734 4.6044 41 1 3.5265 -5.6980 5.7250 42 1 6.8264 -5.4154 7.4839 43 1 4.7827 -3.7756 6.2374 44 1 6.7741 -1.8416 6.7275 45 1 6.5246 -2.8056 8.9475 46 1 9.1581 -4.5604 2.5226 47 1 7.2533 -6.2370 2.5404 48 1 3.7540 -3.0861 4.6966 49 1 5.2077 -3.5992 3.8072 50 1 4.0108 -3.2683 1.6606 51 1 4.0356 -1.7666 2.6163 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17607846_14772022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:31:26 Heat of formation + Delta-G solvation = -155.836660 kcal Electronic energy + Delta-G solvation = -36752.309987 eV Core-core repulsion = 32065.241272 eV Total energy + Delta-G solvation = -4687.068715 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.06545 -40.06248 -39.52200 -38.40408 -38.01590 -37.47042 -36.93641 -35.47149 -34.82167 -31.85232 -31.79742 -30.34368 -28.43433 -28.34561 -27.47485 -25.17302 -24.36050 -23.80610 -22.56998 -21.77645 -21.17895 -20.52639 -19.99042 -19.23337 -18.61998 -18.25459 -18.22656 -17.57434 -17.29551 -17.10140 -16.97223 -16.46058 -16.10150 -15.70798 -15.50999 -15.35796 -15.28664 -15.09079 -14.88161 -14.69984 -14.33817 -14.21530 -14.02061 -13.92733 -13.85485 -13.45004 -13.38877 -13.26775 -13.22004 -13.19186 -13.14149 -12.97153 -12.90323 -12.78947 -12.58765 -12.48548 -12.40339 -12.33097 -12.22577 -12.13906 -12.00460 -11.70517 -11.50359 -11.42588 -11.38486 -11.08085 -10.89567 -10.34971 -10.07175 -9.70119 -5.08838 -0.66207 -0.45422 0.41089 0.67436 1.09780 1.15754 1.18696 1.55072 1.66578 1.85616 2.08977 2.72762 3.17182 3.30837 3.42539 3.50638 3.57006 3.62859 3.69654 3.74605 3.90721 3.94591 4.05037 4.07017 4.17558 4.26156 4.28346 4.33092 4.44041 4.46238 4.49183 4.53558 4.54387 4.70697 4.74654 4.76066 4.78229 4.80239 4.83044 4.88069 4.97828 5.02480 5.07306 5.08332 5.13644 5.15249 5.16268 5.19813 5.24404 5.28313 5.40799 5.56903 6.21167 6.28401 6.80041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.109 3.891 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.353 6.353 6 C 0.463 3.537 7 O -0.528 6.528 8 C -0.077 4.077 9 H 0.132 0.868 10 C -0.100 4.100 11 C -0.115 4.115 12 C 0.144 3.856 13 H 0.083 0.917 14 N -1.087 6.087 15 S 2.723 3.277 16 O -0.999 6.999 17 O -0.982 6.982 18 C -0.673 4.673 19 C -0.103 4.103 20 C -0.082 4.082 21 O -0.527 6.527 22 Si 0.737 3.263 23 S 0.197 5.803 24 C -0.209 4.209 25 C -0.096 4.096 26 C -0.139 4.139 27 C -0.103 4.103 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.432 0.568 42 H 0.146 0.854 43 H 0.387 0.613 44 H -0.244 1.244 45 H -0.264 1.264 46 H 0.195 0.805 47 H 0.152 0.848 48 H 0.098 0.902 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 8.649 1.288 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.270 6.270 6 C 0.307 3.693 7 O -0.417 6.417 8 C -0.096 4.096 9 H 0.150 0.850 10 C -0.138 4.138 11 C -0.154 4.154 12 C 0.037 3.963 13 H 0.101 0.899 14 N -0.851 5.851 15 S 2.812 3.188 16 O -0.989 6.989 17 O -0.972 6.972 18 C -0.775 4.775 19 C -0.224 4.224 20 C -0.192 4.192 21 O -0.337 6.337 22 Si 0.635 3.365 23 S 0.461 5.539 24 C -0.345 4.345 25 C -0.124 4.124 26 C -0.178 4.178 27 C -0.141 4.141 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.271 0.729 42 H 0.163 0.837 43 H 0.239 0.761 44 H -0.168 1.168 45 H -0.189 1.189 46 H 0.212 0.788 47 H 0.169 0.831 48 H 0.116 0.884 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.089 8.969 2.106 10.080 hybrid contribution -1.855 -0.808 -1.418 2.471 sum 2.234 8.161 0.688 8.489 Atomic orbital electron populations 1.22468 0.94205 1.03547 1.03648 1.22381 0.94364 0.93260 0.82666 1.21872 1.02449 0.91211 1.04010 1.22466 1.01840 1.02044 0.97489 1.86546 1.69662 1.25345 1.45476 1.24175 0.76652 0.80641 0.87801 1.90599 1.36399 1.70424 1.44263 1.21266 0.98460 0.95275 0.94629 0.85048 1.21374 1.01318 0.92321 0.98796 1.21765 0.93068 1.01559 0.99031 1.20981 0.96218 0.91932 0.87165 0.89934 1.55333 1.42779 1.65665 1.21293 1.00706 0.73192 0.72930 0.71948 1.93539 1.86646 1.68124 1.50556 1.93543 1.86206 1.75828 1.41669 1.29623 1.25027 1.20086 1.02766 1.25178 1.00216 0.97680 0.99331 1.25193 0.83828 1.16289 0.93862 1.86660 1.17962 1.49676 1.79383 0.93993 0.90638 0.72390 0.79480 1.84116 1.25698 1.36304 1.07732 1.26224 1.03965 1.02005 1.02319 1.19798 0.95453 1.00248 0.96862 1.22190 1.01616 0.94538 0.99407 1.21442 0.91418 1.02249 0.99028 0.91641 0.89794 0.91898 0.91116 0.88971 0.91150 0.91951 0.89799 0.91651 0.92015 0.90820 0.90612 0.88560 0.72856 0.83684 0.76076 1.16825 1.18922 0.78789 0.83067 0.88367 0.90622 0.91751 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.28 8.37 71.98 0.60 0.32 16 2 C 0.11 0.11 1.13 -10.79 -0.01 0.09 16 3 C -0.14 0.46 8.85 71.98 0.64 1.10 16 4 C -0.18 -0.30 8.37 71.98 0.60 0.30 16 5 O -0.35 -0.73 9.79 -51.38 -0.50 -1.24 16 6 C 0.46 1.19 6.56 71.24 0.47 1.65 16 7 O -0.53 -4.35 11.48 21.97 0.25 -4.10 16 8 C -0.08 0.31 2.63 -11.54 -0.03 0.28 16 9 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 10 C -0.10 0.26 4.49 30.59 0.14 0.40 16 11 C -0.12 0.63 5.45 30.59 0.17 0.80 16 12 C 0.14 -0.62 2.80 44.99 0.13 -0.49 16 13 H 0.08 -0.10 7.47 -2.39 -0.02 -0.11 16 14 N -1.09 2.54 3.59 -169.39 -0.61 1.93 16 15 S 2.72 14.92 4.92 -56.49 -0.28 14.64 16 16 O -1.00 -12.10 16.64 -128.00 -2.13 -14.23 16 17 O -0.98 -11.22 16.61 -123.18 -2.05 -13.26 16 18 C -0.67 -0.92 4.72 21.22 0.10 -0.82 16 19 C -0.10 0.21 5.57 24.59 0.14 0.35 16 20 C -0.08 0.27 2.11 71.23 0.15 0.42 16 21 O -0.53 2.16 8.37 -140.63 -1.18 0.98 16 22 Si 0.74 -4.70 31.00 68.60 2.13 -2.58 16 23 S 0.20 -1.08 20.74 -56.49 -1.17 -2.26 16 24 C -0.21 0.78 11.23 66.72 0.75 1.53 16 25 C -0.10 -0.04 9.70 21.22 0.21 0.17 16 26 C -0.14 1.12 4.61 30.59 0.14 1.26 16 27 C -0.10 0.62 5.13 30.60 0.16 0.78 16 28 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.06 0.39 5.89 -2.38 -0.01 0.38 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.06 0.40 5.89 -2.38 -0.01 0.39 16 35 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.06 0.05 8.10 -2.39 -0.02 0.03 16 38 H 0.07 -0.08 8.10 -2.39 -0.02 -0.10 16 39 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H 0.43 -2.29 7.65 -96.75 -0.74 -3.03 16 42 H 0.15 -0.30 7.82 -2.39 -0.02 -0.31 16 43 H 0.39 -3.97 6.12 -74.05 -0.45 -4.43 16 44 H -0.24 1.28 7.11 99.48 0.71 1.99 16 45 H -0.26 0.10 7.11 99.48 0.71 0.81 16 46 H 0.20 -1.64 8.06 -2.91 -0.02 -1.67 16 47 H 0.15 0.13 7.74 -2.91 -0.02 0.11 16 48 H 0.10 -1.24 6.99 -2.38 -0.02 -1.26 16 49 H 0.08 -0.58 6.81 -2.39 -0.02 -0.60 16 50 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 51 H 0.09 -0.63 8.11 -2.39 -0.02 -0.65 16 Total: 0.00 -22.90 413.39 -1.39 -24.29 By element: Atomic # 1 Polarization: -12.14 SS G_CDS: -0.19 Total: -12.33 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.34 Total: 8.14 kcal Atomic # 7 Polarization: 2.54 SS G_CDS: -0.61 Total: 1.93 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -5.60 Total: -31.84 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: 2.13 Total: -2.58 kcal Atomic # 16 Polarization: 13.84 SS G_CDS: -1.45 Total: 12.39 kcal Total: -22.90 -1.39 -24.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17607846_14772022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.547 kcal (2) G-P(sol) polarization free energy of solvation -22.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds