Wall clock time and date at job start Mon Mar 8 2021 12:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.46978 * 2 1 4 4 C 1.50708 * 109.47245 * 240.00165 * 2 1 3 5 5 C 1.38236 * 119.99904 * 120.27310 * 4 2 1 6 6 C 1.38235 * 119.99576 * 180.23648 * 5 4 2 7 7 C 1.38240 * 120.00066 * 359.48756 * 6 5 4 8 8 S 1.76197 * 120.00071 * 180.28118 * 7 6 5 9 9 O 1.42101 * 106.40255 * 203.54298 * 8 7 6 10 10 O 1.42104 * 106.39902 * 336.45694 * 8 7 6 11 11 N 1.65597 * 107.22155 * 89.99929 * 8 7 6 12 12 C 1.46500 * 119.99842 * 66.48008 * 11 8 7 13 13 C 1.50695 * 112.84974 * 65.44264 * 12 11 8 14 14 C 1.38444 * 120.01332 * 192.44087 * 13 12 11 15 15 F 1.35098 * 120.02628 * 0.02562 * 14 13 12 16 16 C 1.38484 * 119.94705 * 179.72415 * 14 13 12 17 17 C 1.38177 * 119.97297 * 0.57641 * 16 14 13 18 18 C 1.38268 * 120.02555 * 359.69836 * 17 16 14 19 19 C 1.38220 * 120.05332 * 0.02562 * 18 17 16 20 20 C 1.53780 * 113.61468 * 294.24827 * 12 11 8 21 21 C 1.54054 * 86.98545 * 270.83757 * 20 12 11 22 22 H 1.09004 * 113.69246 * 89.12407 * 21 20 12 23 23 F 1.39895 * 113.62269 * 220.02150 * 21 20 12 24 24 C 1.53781 * 113.61516 * 196.63950 * 12 11 8 25 25 C 1.38235 * 120.00174 * 0.25862 * 7 6 5 26 26 C 1.38232 * 119.99615 * 300.00175 * 4 2 1 27 27 H 0.96691 * 114.00260 * 60.00131 * 1 2 3 28 28 H 1.09000 * 109.47776 * 120.00314 * 2 1 3 29 29 H 1.48503 * 110.00024 * 298.67843 * 3 2 1 30 30 H 1.48499 * 110.00031 * 60.00579 * 3 2 1 31 31 H 1.07997 * 120.00444 * 0.02562 * 5 4 2 32 32 H 1.07997 * 120.00033 * 179.76770 * 6 5 4 33 33 H 0.97003 * 120.00081 * 246.47995 * 11 8 7 34 34 H 1.07999 * 120.00915 * 180.29353 * 16 14 13 35 35 H 1.07997 * 119.98582 * 179.72534 * 17 16 14 36 36 H 1.08001 * 119.96948 * 180.02562 * 18 17 16 37 37 H 1.07995 * 119.98868 * 180.02562 * 19 18 17 38 38 H 1.09000 * 113.61633 * 25.42553 * 20 12 11 39 39 H 1.08999 * 113.61667 * 156.33962 * 20 12 11 40 40 H 1.08994 * 113.61494 * 203.66921 * 24 12 11 41 41 H 1.09005 * 113.61417 * 334.56702 * 24 12 11 42 42 H 1.07994 * 120.00435 * 180.02562 * 25 7 6 43 43 H 1.07997 * 120.00242 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7308 -0.0402 -2.1376 6 6 3.1875 -0.6904 -3.2687 7 6 2.8536 -2.0139 -3.4875 8 16 3.4419 -2.8449 -4.9255 9 8 2.5420 -3.9182 -5.1651 10 8 3.7210 -1.8356 -5.8861 11 7 4.8965 -3.5326 -4.5338 12 6 4.9520 -4.6214 -3.5551 13 6 4.2532 -5.8698 -4.0283 14 6 3.9884 -6.8954 -3.1369 15 9 4.3559 -6.7775 -1.8422 16 6 3.3411 -8.0397 -3.5720 17 6 2.9708 -8.1616 -4.8977 18 6 3.2409 -7.1390 -5.7883 19 6 3.8818 -5.9940 -5.3539 20 6 4.5518 -4.1928 -2.1335 21 6 6.0354 -3.8438 -1.9088 22 1 6.2917 -2.8213 -2.1863 23 9 6.5086 -4.1972 -0.6406 24 6 6.3624 -4.8782 -2.9987 25 6 2.0585 -2.6857 -2.5778 26 6 1.5974 -2.0338 -1.4493 27 1 -0.3933 0.4416 -0.7650 28 1 1.7924 -0.5139 0.8899 29 1 1.5878 2.4585 -1.2243 30 1 1.5615 2.4678 1.2085 31 1 2.9957 0.9923 -1.9642 32 1 3.8090 -0.1658 -3.9793 33 1 5.7117 -3.2146 -4.9523 34 1 3.1298 -8.8384 -2.8765 35 1 2.4700 -9.0557 -5.2382 36 1 2.9507 -7.2350 -6.8241 37 1 4.0919 -5.1958 -6.0503 38 1 3.8897 -3.3273 -2.1084 39 1 4.1982 -5.0159 -1.5125 40 1 6.5028 -5.8883 -2.6140 41 1 7.1609 -4.5658 -3.6717 42 1 1.7980 -3.7197 -2.7484 43 1 0.9768 -2.5588 -0.7382 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17636828_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:29 Heat of formation + Delta-G solvation = -82.844257 kcal Electronic energy + Delta-G solvation = -35010.744659 eV Core-core repulsion = 30173.617374 eV Total energy + Delta-G solvation = -4837.127286 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.088 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -50.13338 -48.53318 -41.30940 -40.82446 -39.05046 -38.33830 -37.95783 -37.00832 -33.97073 -33.25099 -32.37597 -32.02777 -31.36533 -27.58056 -27.12263 -26.05235 -24.23689 -23.72130 -23.11839 -22.80494 -21.49760 -20.56131 -19.58713 -18.83500 -18.63918 -18.25309 -17.95029 -17.47225 -17.17426 -17.09024 -16.97889 -16.73435 -16.48403 -16.34094 -15.92341 -15.84599 -15.82270 -15.55500 -15.12133 -14.94008 -14.69904 -14.61340 -14.38424 -14.21644 -13.90496 -13.82554 -13.73424 -13.21602 -13.18050 -13.06700 -12.98853 -12.82355 -12.76852 -12.62282 -12.44357 -12.20893 -12.07274 -11.88549 -11.70357 -11.54061 -10.92669 -10.87252 -10.44142 -10.19472 -9.83027 -9.62638 -5.12133 -0.88419 -0.49910 0.04110 0.10628 0.28998 1.07370 1.44783 1.62836 1.82163 2.17326 2.46857 2.61327 3.00013 3.00961 3.11282 3.12547 3.16666 3.21304 3.29622 3.33982 3.54491 3.63845 3.66424 3.74716 3.82188 4.01739 4.07566 4.17407 4.24231 4.26851 4.34889 4.37692 4.43505 4.45920 4.48798 4.59695 4.65954 4.67387 4.80892 4.83423 4.84881 5.04418 5.06232 5.11163 5.21331 5.32217 5.47875 5.54122 5.64452 5.89412 6.18889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.085 4.085 3 Si 0.686 3.314 4 C -0.057 4.057 5 C -0.138 4.138 6 C -0.012 4.012 7 C -0.680 4.680 8 S 2.688 3.312 9 O -0.937 6.937 10 O -0.951 6.951 11 N -1.095 6.095 12 C 0.202 3.798 13 C -0.132 4.132 14 C 0.109 3.891 15 F -0.131 7.131 16 C -0.156 4.156 17 C -0.083 4.083 18 C -0.126 4.126 19 C -0.035 4.035 20 C -0.214 4.214 21 C 0.076 3.924 22 H 0.113 0.887 23 F -0.199 7.199 24 C -0.146 4.146 25 C -0.014 4.014 26 C -0.115 4.115 27 H 0.378 0.622 28 H 0.126 0.874 29 H -0.257 1.257 30 H -0.252 1.252 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.426 0.574 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.144 0.856 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -0.145 -0.255 3.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.194 4.194 3 Si 0.586 3.414 4 C -0.058 4.058 5 C -0.157 4.157 6 C -0.031 4.031 7 C -0.767 4.767 8 S 2.778 3.222 9 O -0.926 6.926 10 O -0.941 6.941 11 N -0.853 5.853 12 C 0.112 3.888 13 C -0.135 4.135 14 C 0.090 3.910 15 F -0.109 7.109 16 C -0.175 4.175 17 C -0.101 4.101 18 C -0.145 4.145 19 C -0.053 4.053 20 C -0.252 4.252 21 C 0.040 3.960 22 H 0.130 0.870 23 F -0.180 7.180 24 C -0.185 4.185 25 C -0.033 4.033 26 C -0.134 4.134 27 H 0.226 0.774 28 H 0.144 0.856 29 H -0.181 1.181 30 H -0.177 1.177 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.262 0.738 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.162 0.838 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.328 0.304 -0.351 2.374 hybrid contribution -0.709 0.267 0.248 0.797 sum 1.619 0.571 -0.103 1.720 Atomic orbital electron populations 1.86631 1.17088 1.79979 1.49399 1.25212 0.84457 1.11488 0.98281 0.94971 0.91561 0.74029 0.80798 1.20720 0.94622 0.94778 0.95648 1.21168 0.99395 1.00330 0.94784 1.20891 0.94715 0.91786 0.95745 1.30938 1.15422 1.07232 1.23070 1.02212 0.72951 0.73552 0.73504 1.93685 1.62862 1.52923 1.83167 1.93642 1.84250 1.59075 1.57108 1.55345 1.26983 1.46792 1.56225 1.19327 0.98119 0.84403 0.86994 1.19598 1.04270 0.95036 0.94560 1.17305 1.00162 0.95502 0.78081 1.91362 1.89644 1.95421 1.34492 1.21116 1.01467 0.97360 0.97577 1.21099 0.97704 0.99058 0.92230 1.21202 0.99207 0.93489 1.00563 1.20694 0.94299 0.96659 0.93694 1.25206 0.98250 1.06036 0.95673 1.22964 0.94337 0.99448 0.79240 0.86957 1.92838 1.89494 1.93449 1.42205 1.23940 0.95047 1.01928 0.97550 1.20970 0.90932 0.99905 0.91458 1.21197 1.00119 0.94096 0.97943 0.77396 0.85604 1.18144 1.17718 0.84399 0.83649 0.73789 0.84442 0.84806 0.85089 0.86016 0.88295 0.84610 0.86945 0.88707 0.83782 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.10 12.77 -35.23 -0.45 -0.55 16 2 C -0.08 0.12 2.82 36.01 0.10 0.22 16 3 Si 0.69 -1.36 29.79 -169.99 -5.06 -6.43 16 4 C -0.06 0.06 5.39 -104.62 -0.56 -0.50 16 5 C -0.14 0.21 8.67 -39.58 -0.34 -0.13 16 6 C -0.01 0.01 9.52 -39.58 -0.38 -0.36 16 7 C -0.68 0.16 4.50 -39.58 -0.18 -0.02 16 8 S 2.69 0.79 5.31 -107.50 -0.57 0.22 16 9 O -0.94 -2.28 13.04 -57.17 -0.75 -3.03 16 10 O -0.95 -2.69 17.28 -57.17 -0.99 -3.68 16 11 N -1.10 2.58 4.70 0.26 0.00 2.58 16 12 C 0.20 -0.26 1.19 -132.16 -0.16 -0.42 16 13 C -0.13 -0.06 4.73 -104.55 -0.49 -0.55 16 14 C 0.11 0.09 6.75 -39.42 -0.27 -0.17 16 15 F -0.13 -0.15 12.97 2.25 0.03 -0.12 16 16 C -0.16 -0.02 10.03 -39.51 -0.40 -0.42 16 17 C -0.08 0.03 10.04 -39.59 -0.40 -0.37 16 18 C -0.13 -0.04 10.04 -39.58 -0.40 -0.43 16 19 C -0.03 -0.03 6.97 -39.59 -0.28 -0.30 16 20 C -0.21 0.21 6.50 -25.78 -0.17 0.05 16 21 C 0.08 -0.10 5.58 -25.77 -0.14 -0.25 16 22 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 23 F -0.20 -0.35 17.41 2.25 0.04 -0.31 16 24 C -0.15 0.29 6.99 -25.92 -0.18 0.11 16 25 C -0.01 0.00 6.73 -39.58 -0.27 -0.26 16 26 C -0.11 0.06 9.61 -39.58 -0.38 -0.32 16 27 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 28 H 0.13 -0.29 7.96 -51.93 -0.41 -0.70 16 29 H -0.26 0.01 7.11 56.52 0.40 0.41 16 30 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 31 H 0.14 -0.49 4.88 -52.49 -0.26 -0.74 16 32 H 0.15 -0.37 7.62 -52.49 -0.40 -0.76 16 33 H 0.43 -2.07 8.79 -34.47 -0.30 -2.38 16 34 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 35 H 0.13 -0.33 8.06 -52.49 -0.42 -0.76 16 36 H 0.13 -0.18 8.06 -52.49 -0.42 -0.60 16 37 H 0.12 0.00 6.10 -52.49 -0.32 -0.32 16 38 H 0.10 -0.16 3.11 -51.93 -0.16 -0.32 16 39 H 0.14 -0.02 4.99 -51.93 -0.26 -0.28 16 40 H 0.11 -0.13 7.18 -51.93 -0.37 -0.50 16 41 H 0.09 -0.37 8.09 -51.93 -0.42 -0.79 16 42 H 0.14 -0.11 7.62 -52.49 -0.40 -0.51 16 43 H 0.14 -0.17 8.06 -52.49 -0.42 -0.60 16 LS Contribution 358.97 15.07 5.41 5.41 Total: 0.00 -9.36 358.97 -11.45 -20.81 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -4.22 Total: -10.79 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -4.88 Total: -4.13 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: 0.00 Total: 2.58 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -2.18 Total: -7.26 kcal Atomic # 9 Polarization: -0.49 SS G_CDS: 0.07 Total: -0.42 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.06 Total: -6.43 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -0.57 Total: 0.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -9.36 -11.45 -20.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.035 kcal (2) G-P(sol) polarization free energy of solvation -9.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds