Wall clock time and date at job start Mon Mar 8 2021 12:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.46978 * 2 1 4 4 C 1.50708 * 109.47245 * 240.00165 * 2 1 3 5 5 C 1.38236 * 119.99904 * 120.27310 * 4 2 1 6 6 C 1.38235 * 119.99576 * 180.23648 * 5 4 2 7 7 C 1.38240 * 120.00066 * 359.48756 * 6 5 4 8 8 S 1.76197 * 120.00071 * 180.28118 * 7 6 5 9 9 O 1.42101 * 106.40255 * 203.54298 * 8 7 6 10 10 O 1.42104 * 106.39902 * 336.45694 * 8 7 6 11 11 N 1.65597 * 107.22155 * 89.99929 * 8 7 6 12 12 C 1.46500 * 119.99842 * 66.48008 * 11 8 7 13 13 C 1.50695 * 112.84974 * 65.44264 * 12 11 8 14 14 C 1.38444 * 120.01332 * 192.44087 * 13 12 11 15 15 F 1.35098 * 120.02628 * 0.02562 * 14 13 12 16 16 C 1.38484 * 119.94705 * 179.72415 * 14 13 12 17 17 C 1.38177 * 119.97297 * 0.57641 * 16 14 13 18 18 C 1.38268 * 120.02555 * 359.69836 * 17 16 14 19 19 C 1.38220 * 120.05332 * 0.02562 * 18 17 16 20 20 C 1.53780 * 113.61468 * 294.24827 * 12 11 8 21 21 C 1.54054 * 86.98545 * 270.83757 * 20 12 11 22 22 H 1.09004 * 113.69246 * 89.12407 * 21 20 12 23 23 F 1.39895 * 113.62269 * 220.02150 * 21 20 12 24 24 C 1.53781 * 113.61516 * 196.63950 * 12 11 8 25 25 C 1.38235 * 120.00174 * 0.25862 * 7 6 5 26 26 C 1.38232 * 119.99615 * 300.00175 * 4 2 1 27 27 H 0.96691 * 114.00260 * 60.00131 * 1 2 3 28 28 H 1.09000 * 109.47776 * 120.00314 * 2 1 3 29 29 H 1.48503 * 110.00024 * 298.67843 * 3 2 1 30 30 H 1.48499 * 110.00031 * 60.00579 * 3 2 1 31 31 H 1.07997 * 120.00444 * 0.02562 * 5 4 2 32 32 H 1.07997 * 120.00033 * 179.76770 * 6 5 4 33 33 H 0.97003 * 120.00081 * 246.47995 * 11 8 7 34 34 H 1.07999 * 120.00915 * 180.29353 * 16 14 13 35 35 H 1.07997 * 119.98582 * 179.72534 * 17 16 14 36 36 H 1.08001 * 119.96948 * 180.02562 * 18 17 16 37 37 H 1.07995 * 119.98868 * 180.02562 * 19 18 17 38 38 H 1.09000 * 113.61633 * 25.42553 * 20 12 11 39 39 H 1.08999 * 113.61667 * 156.33962 * 20 12 11 40 40 H 1.08994 * 113.61494 * 203.66921 * 24 12 11 41 41 H 1.09005 * 113.61417 * 334.56702 * 24 12 11 42 42 H 1.07994 * 120.00435 * 180.02562 * 25 7 6 43 43 H 1.07997 * 120.00242 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7308 -0.0402 -2.1376 6 6 3.1875 -0.6904 -3.2687 7 6 2.8536 -2.0139 -3.4875 8 16 3.4419 -2.8449 -4.9255 9 8 2.5420 -3.9182 -5.1651 10 8 3.7210 -1.8356 -5.8861 11 7 4.8965 -3.5326 -4.5338 12 6 4.9520 -4.6214 -3.5551 13 6 4.2532 -5.8698 -4.0283 14 6 3.9884 -6.8954 -3.1369 15 9 4.3559 -6.7775 -1.8422 16 6 3.3411 -8.0397 -3.5720 17 6 2.9708 -8.1616 -4.8977 18 6 3.2409 -7.1390 -5.7883 19 6 3.8818 -5.9940 -5.3539 20 6 4.5518 -4.1928 -2.1335 21 6 6.0354 -3.8438 -1.9088 22 1 6.2917 -2.8213 -2.1863 23 9 6.5086 -4.1972 -0.6406 24 6 6.3624 -4.8782 -2.9987 25 6 2.0585 -2.6857 -2.5778 26 6 1.5974 -2.0338 -1.4493 27 1 -0.3933 0.4416 -0.7650 28 1 1.7924 -0.5139 0.8899 29 1 1.5878 2.4585 -1.2243 30 1 1.5615 2.4678 1.2085 31 1 2.9957 0.9923 -1.9642 32 1 3.8090 -0.1658 -3.9793 33 1 5.7117 -3.2146 -4.9523 34 1 3.1298 -8.8384 -2.8765 35 1 2.4700 -9.0557 -5.2382 36 1 2.9507 -7.2350 -6.8241 37 1 4.0919 -5.1958 -6.0503 38 1 3.8897 -3.3273 -2.1084 39 1 4.1982 -5.0159 -1.5125 40 1 6.5028 -5.8883 -2.6140 41 1 7.1609 -4.5658 -3.6717 42 1 1.7980 -3.7197 -2.7484 43 1 0.9768 -2.5588 -0.7382 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17636828_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:28 Heat of formation + Delta-G solvation = -82.347322 kcal Electronic energy + Delta-G solvation = -35010.723111 eV Core-core repulsion = 30173.617374 eV Total energy + Delta-G solvation = -4837.105737 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.088 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -50.16556 -48.54356 -41.23474 -40.74269 -38.99003 -38.43814 -37.90492 -37.11350 -33.87289 -33.18072 -32.28297 -31.98503 -31.34087 -27.48273 -27.01521 -25.97720 -24.14480 -23.70772 -23.04782 -22.75274 -21.42232 -20.51984 -19.54202 -18.80709 -18.61726 -18.22770 -17.90532 -17.42417 -17.10408 -17.07990 -16.93545 -16.72542 -16.39639 -16.29827 -15.87070 -15.82745 -15.77679 -15.52748 -15.09265 -14.84759 -14.67497 -14.58167 -14.35091 -14.19125 -13.87385 -13.79416 -13.73441 -13.29577 -13.18088 -13.09426 -12.95673 -12.76619 -12.71205 -12.59480 -12.40147 -12.15749 -12.04663 -11.83655 -11.62439 -11.43119 -10.82895 -10.79951 -10.36647 -10.10859 -9.80970 -9.61871 -4.98741 -0.87099 -0.45305 0.12218 0.13312 0.29358 1.19833 1.54722 1.68167 1.91206 2.23669 2.50430 2.63474 3.06131 3.11392 3.17257 3.22334 3.25947 3.28115 3.39774 3.44795 3.64110 3.75435 3.80660 3.83606 3.88573 4.13225 4.15681 4.26975 4.31691 4.39265 4.41062 4.45446 4.54877 4.57070 4.64962 4.70403 4.78697 4.79519 4.89679 4.90556 4.93060 5.05975 5.13528 5.20290 5.30703 5.35945 5.50261 5.63621 5.89554 5.93224 6.36260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.092 4.092 3 Si 0.769 3.231 4 C -0.057 4.057 5 C -0.139 4.139 6 C -0.017 4.017 7 C -0.684 4.684 8 S 2.702 3.298 9 O -0.962 6.962 10 O -0.976 6.976 11 N -1.081 6.081 12 C 0.204 3.796 13 C -0.136 4.136 14 C 0.093 3.907 15 F -0.136 7.136 16 C -0.164 4.164 17 C -0.087 4.087 18 C -0.138 4.138 19 C -0.052 4.052 20 C -0.218 4.218 21 C 0.072 3.928 22 H 0.138 0.862 23 F -0.218 7.218 24 C -0.141 4.141 25 C -0.021 4.021 26 C -0.123 4.123 27 H 0.388 0.612 28 H 0.134 0.866 29 H -0.279 1.279 30 H -0.302 1.302 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.439 0.561 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.142 0.858 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 0.303 -0.545 3.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.201 4.201 3 Si 0.674 3.326 4 C -0.058 4.058 5 C -0.157 4.157 6 C -0.036 4.036 7 C -0.772 4.772 8 S 2.793 3.207 9 O -0.951 6.951 10 O -0.967 6.967 11 N -0.842 5.842 12 C 0.114 3.886 13 C -0.139 4.139 14 C 0.074 3.926 15 F -0.115 7.115 16 C -0.183 4.183 17 C -0.104 4.104 18 C -0.156 4.156 19 C -0.070 4.070 20 C -0.256 4.256 21 C 0.036 3.964 22 H 0.156 0.844 23 F -0.199 7.199 24 C -0.180 4.180 25 C -0.040 4.040 26 C -0.142 4.142 27 H 0.237 0.763 28 H 0.152 0.848 29 H -0.205 1.205 30 H -0.230 1.230 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.278 0.722 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.136 0.864 42 H 0.160 0.840 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.117 0.730 -0.675 3.272 hybrid contribution -1.011 0.126 0.381 1.088 sum 2.106 0.857 -0.294 2.293 Atomic orbital electron populations 1.86602 1.18028 1.80378 1.50233 1.25425 0.83819 1.12269 0.98579 0.94061 0.90172 0.71601 0.76806 1.20784 0.94593 0.94574 0.95828 1.21403 0.98813 1.01200 0.94272 1.21156 0.94761 0.91493 0.96209 1.30825 1.15929 1.07734 1.22704 1.01549 0.72958 0.72858 0.73297 1.93653 1.63978 1.53717 1.83798 1.93604 1.84742 1.59843 1.58484 1.55018 1.26844 1.46266 1.56081 1.19275 0.98543 0.83956 0.86830 1.19749 1.04149 0.95544 0.94419 1.17504 1.00910 0.96159 0.78054 1.91351 1.89784 1.95523 1.34802 1.21373 1.01226 0.97533 0.98188 1.21367 0.97477 0.99672 0.91924 1.21489 0.99071 0.93563 1.01475 1.20880 0.94921 0.97167 0.94043 1.25191 0.98826 1.05881 0.95656 1.23250 0.93845 1.00867 0.78390 0.84437 1.92798 1.89694 1.93731 1.43652 1.23923 0.95191 1.01358 0.97550 1.21000 0.91284 1.00002 0.91753 1.21291 1.00348 0.94536 0.97977 0.76290 0.84798 1.20490 1.22993 0.82375 0.82103 0.72191 0.83264 0.82740 0.83824 0.85674 0.87774 0.85768 0.87964 0.86372 0.83985 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.24 12.77 -148.98 -1.90 -2.14 16 2 C -0.09 0.30 2.82 71.24 0.20 0.50 16 3 Si 0.77 -3.39 29.79 68.60 2.04 -1.35 16 4 C -0.06 0.15 5.39 -19.86 -0.11 0.04 16 5 C -0.14 0.58 8.67 22.27 0.19 0.77 16 6 C -0.02 0.05 9.52 22.27 0.21 0.26 16 7 C -0.68 0.34 4.50 22.27 0.10 0.44 16 8 S 2.70 2.27 5.31 -56.49 -0.30 1.97 16 9 O -0.96 -5.54 13.04 -128.00 -1.67 -7.21 16 10 O -0.98 -5.58 17.28 -128.00 -2.21 -7.79 16 11 N -1.08 5.39 4.70 -153.09 -0.72 4.67 16 12 C 0.20 -0.51 1.19 3.38 0.00 -0.50 16 13 C -0.14 -0.21 4.73 -19.82 -0.09 -0.30 16 14 C 0.09 0.25 6.75 22.38 0.15 0.40 16 15 F -0.14 -0.48 12.97 44.97 0.58 0.10 16 16 C -0.16 -0.14 10.03 22.31 0.22 0.09 16 17 C -0.09 0.05 10.04 22.26 0.22 0.27 16 18 C -0.14 -0.14 10.04 22.27 0.22 0.09 16 19 C -0.05 -0.12 6.97 22.26 0.16 0.04 16 20 C -0.22 0.36 6.50 31.21 0.20 0.56 16 21 C 0.07 -0.23 5.58 31.21 0.17 -0.05 16 22 H 0.14 -1.16 8.14 -2.38 -0.02 -1.18 16 23 F -0.22 -0.79 17.41 44.97 0.78 -0.01 16 24 C -0.14 0.62 6.99 31.12 0.22 0.83 16 25 C -0.02 0.00 6.73 22.27 0.15 0.15 16 26 C -0.12 0.11 9.61 22.27 0.21 0.32 16 27 H 0.39 -1.89 8.70 -74.06 -0.64 -2.53 16 28 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 29 H -0.28 0.22 7.11 99.48 0.71 0.92 16 30 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 31 H 0.16 -1.40 4.88 -2.91 -0.01 -1.41 16 32 H 0.16 -1.01 7.62 -2.91 -0.02 -1.03 16 33 H 0.44 -4.65 8.79 -96.74 -0.85 -5.50 16 34 H 0.15 -0.37 8.06 -2.91 -0.02 -0.39 16 35 H 0.15 -0.85 8.06 -2.91 -0.02 -0.87 16 36 H 0.14 -0.36 8.06 -2.91 -0.02 -0.39 16 37 H 0.13 0.08 6.10 -2.91 -0.02 0.07 16 38 H 0.10 -0.30 3.11 -2.39 -0.01 -0.31 16 39 H 0.12 0.12 4.99 -2.39 -0.01 0.11 16 40 H 0.10 -0.19 7.18 -2.39 -0.02 -0.20 16 41 H 0.12 -1.10 8.09 -2.38 -0.02 -1.12 16 42 H 0.14 -0.02 7.62 -2.91 -0.02 -0.05 16 43 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: 0.00 -21.92 358.97 -1.29 -23.21 By element: Atomic # 1 Polarization: -15.01 SS G_CDS: -0.34 Total: -15.35 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 2.45 Total: 3.90 kcal Atomic # 7 Polarization: 5.39 SS G_CDS: -0.72 Total: 4.67 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -5.78 Total: -17.14 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 1.37 Total: 0.10 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.04 Total: -1.35 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -0.30 Total: 1.97 kcal Total: -21.92 -1.29 -23.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.134 kcal (2) G-P(sol) polarization free energy of solvation -21.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds